Cysteine-rich receptor-like protein kinase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Stress-antifung | PF01657 | 34 - 131 | 1.4e-27 | Salt stress response/antifungal |
| Stress-antifung | PF01657 | 156 - 244 | 7.8e-11 | Salt stress response/antifungal |
| Pkinase | PF00069 | 349 - 548 | 1.4e-44 | Protein kinase domain |
| PK_Tyr_Ser-Thr | PF07714 | 352 - 614 | 1.7e-45 | Protein tyrosine and serine/threonine kinase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 763 |
| AccB1I | GGYRCC | 1 cut(s) | 763 |
| AccBSI | CCGCTC | 1 cut(s) | 393 |
| AciI | CCGC | 2 cut(s) | 391, 567 |
| AclWI | GGATC | 4 cut(s) | 832, 1686, 1730, 1913 |
| AcoI | YGGCCR | 2 cut(s) | 528, 1188 |
| AcsI | RAATTY | 5 cut(s) | 95, 1155, 1163, 1207, 1265 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1746 |
| AgsI | TTSAA | 9 cut(s) | 220, 430, 439, 482, 491, 511, 986, 1199, 2016 |
| AjnI | CCWGG | 3 cut(s) | 933, 961, 1660 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1819, 1851 |
| Alw21I | GWGCWC | 1 cut(s) | 608 |
| Alw26I | GTCTC | 2 cut(s) | 323, 1289 |
| Alw44I | GTGCAC | 1 cut(s) | 604 |
| AlwI | GGATC | 4 cut(s) | 832, 1686, 1730, 1913 |
| Ama87I | CYCGRG | 2 cut(s) | 1365, 1756 |
| AoxI | GGCC | 4 cut(s) | 177, 528, 1188, 1823 |
| ApaLI | GTGCAC | 1 cut(s) | 604 |
| ApeKI | GCWGC | 3 cut(s) | 1721, 1977, 1980 |
| ApoI | RAATTY | 5 cut(s) | 95, 1155, 1163, 1207, 1265 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1251 |
| Asp718I | GGTACC | 1 cut(s) | 763 |
| AspLEI | GCGC | 1 cut(s) | 673 |
| AspS9I | GGNCC | 2 cut(s) | 533, 1536 |
| AsuC2I | CCSGG | 1 cut(s) | 819 |
| AsuHPI | GGTGA | 5 cut(s) | 157, 977, 1088, 1881, 1963 |
| AsuII | TTCGAA | 1 cut(s) | 1402 |
| AvaI | CYCGRG | 2 cut(s) | 1365, 1756 |
| AvaII | GGWCC | 2 cut(s) | 533, 1536 |
| BaeGI | GKGCMC | 1 cut(s) | 608 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 352, 385 |
| BalI | TGGCCA | 1 cut(s) | 1190 |
| BanI | GGYRCC | 1 cut(s) | 763 |
| BanII | GRGCYC | 1 cut(s) | 1374 |
| BbsI | GAAGAC | 1 cut(s) | 935 |
| Bbv12I | GWGCWC | 1 cut(s) | 608 |
| BbvI | GCAGC | 3 cut(s) | 1708, 1989, 1992 |
| BccI | CCATC | 3 cut(s) | 404, 781, 805 |
| BceAI | ACGGC | 3 cut(s) | 217, 238, 684 |
| BciT130I | CCWGG | 3 cut(s) | 935, 963, 1662 |
| BclI | TGATCA | 2 cut(s) | 1501, 1989 |
| BcnI | CCSGG | 1 cut(s) | 819 |
| BcoDI | GTCTC | 2 cut(s) | 323, 1289 |
| BfaI | CTAG | 5 cut(s) | 71, 309, 423, 944, 2035 |
| BfmI | CTRYAG | 2 cut(s) | 259, 1600 |
| BfoI | RGCGCY | 1 cut(s) | 674 |
| BglII | AGATCT | 1 cut(s) | 1760 |
| BisI | GCNGC | 3 cut(s) | 1722, 1978, 1981 |
| BlpI | GCTNAGC | 1 cut(s) | 75 |
| BlsI | GCNGC | 3 cut(s) | 1723, 1979, 1982 |
| Bme1390I | CCNGG | 4 cut(s) | 819, 935, 963, 1662 |
| Bme18I | GGWCC | 2 cut(s) | 533, 1536 |
| BmeT110I | CYCGRG | 2 cut(s) | 1365, 1756 |
| BmgT120I | GGNCC | 2 cut(s) | 533, 1536 |
| BmiI | GGNNCC | 4 cut(s) | 765, 1373, 1537, 1554 |
| BmrFI | CCNGG | 4 cut(s) | 819, 935, 963, 1662 |
| BmrI | ACTGGG | 1 cut(s) | 1871 |
| BmsI | GCATC | 7 cut(s) | 464, 1018, 1039, 1435, 1766, 1788, 2006 |
| BmuI | ACTGGG | 1 cut(s) | 1871 |
| BpiI | GAAGAC | 1 cut(s) | 935 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 303, 335 |
| BpmI | CTGGAG | 2 cut(s) | 1539, 1683 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 75 |
| Bpu14I | TTCGAA | 1 cut(s) | 1402 |
| BpuEI | CTTGAG | 2 cut(s) | 48, 1494 |
| BpuMI | CCSGG | 1 cut(s) | 819 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1844 |
| BsaI | GGTCTC | 1 cut(s) | 323 |
| BsaJI | CCNNGG | 1 cut(s) | 933 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 772, 802 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1746 |
| Bse118I | RCCGGY | 2 cut(s) | 194, 530 |
| Bse1I | ACTGG | 4 cut(s) | 504, 1639, 1877, 1932 |
| Bse3DI | GCAATG | 1 cut(s) | 1572 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1844 |
| BseBI | CCWGG | 3 cut(s) | 935, 963, 1662 |
| BseDI | CCNNGG | 1 cut(s) | 933 |
| BseGI | GGATG | 1 cut(s) | 1779 |
| BseJI | GATNNNNATC | 1 cut(s) | 1844 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1746 |
| BseMI | GCAATG | 1 cut(s) | 1572 |
| BseMII | CTCAG | 3 cut(s) | 89, 408, 671 |
| BseNI | ACTGG | 4 cut(s) | 504, 1639, 1877, 1932 |
| BseRI | GAGGAG | 1 cut(s) | 777 |
| BseSI | GKGCMC | 1 cut(s) | 608 |
| BseX3I | CGGCCG | 1 cut(s) | 528 |
| BseXI | GCAGC | 3 cut(s) | 1708, 1989, 1992 |
| BseYI | CCCAGC | 2 cut(s) | 710, 751 |
| BsgI | GTGCAG | 1 cut(s) | 798 |
| Bsh1285I | CGRYCG | 2 cut(s) | 531, 567 |
| BshFI | GGCC | 4 cut(s) | 179, 530, 1190, 1825 |
| BshNI | GGYRCC | 1 cut(s) | 763 |
| BsiEI | CGRYCG | 2 cut(s) | 531, 567 |
| BsiHKAI | GWGCWC | 1 cut(s) | 608 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1365, 1756 |
| BsiSI | CCGG | 5 cut(s) | 176, 195, 531, 570, 819 |
| BslFI | GGGAC | 5 cut(s) | 318, 1256, 1346, 1549, 1729 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1746 |
| BsmAI | GTCTC | 2 cut(s) | 323, 1289 |
| BsmFI | GGGAC | 5 cut(s) | 318, 1256, 1346, 1549, 1729 |
| BsmI | GAATGC | 2 cut(s) | 635, 1675 |
| BsnI | GGCC | 4 cut(s) | 179, 530, 1190, 1825 |
| Bso31I | GGTCTC | 1 cut(s) | 323 |
| BsoBI | CYCGRG | 2 cut(s) | 1365, 1756 |
| Bsp119I | TTCGAA | 1 cut(s) | 1402 |
| Bsp1286I | GDGCHC | 2 cut(s) | 608, 1374 |
| Bsp1407I | TGTACA | 1 cut(s) | 1801 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 75 |
| BspACI | CCGC | 2 cut(s) | 391, 567 |
| BspANI | GGCC | 4 cut(s) | 179, 530, 1190, 1825 |
| BspCNI | CTCAG | 3 cut(s) | 88, 409, 672 |
| BspHI | TCATGA | 2 cut(s) | 51, 1384 |
| BspLI | GGNNCC | 4 cut(s) | 765, 1373, 1537, 1554 |
| BspMAI | CTGCAG | 1 cut(s) | 263 |
| BspPI | GGATC | 4 cut(s) | 832, 1686, 1730, 1913 |
| BspT104I | TTCGAA | 1 cut(s) | 1402 |
| BspT107I | GGYRCC | 1 cut(s) | 763 |
| BspTNI | GGTCTC | 1 cut(s) | 323 |
| BsrBI | CCGCTC | 1 cut(s) | 393 |
| BsrDI | GCAATG | 1 cut(s) | 1572 |
| BsrFI | RCCGGY | 2 cut(s) | 194, 530 |
| BsrGI | TGTACA | 1 cut(s) | 1801 |
| BsrI | ACTGG | 4 cut(s) | 504, 1639, 1877, 1932 |
| BssAI | RCCGGY | 2 cut(s) | 194, 530 |
| BssECI | CCNNGG | 1 cut(s) | 933 |
| Bst2UI | CCWGG | 3 cut(s) | 935, 963, 1662 |
| Bst4CI | ACNGT | 4 cut(s) | 134, 368, 381, 1951 |
| Bst6I | CTCTTC | 3 cut(s) | 506, 543, 1948 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 639 |
| BstAUI | TGTACA | 1 cut(s) | 1801 |
| BstBI | TTCGAA | 1 cut(s) | 1402 |
| BstC8I | GCNNGC | 2 cut(s) | 81, 608 |
| BstDEI | CTNAG | 4 cut(s) | 75, 417, 680, 1685 |
| BstEII | GGTNACC | 1 cut(s) | 1094 |
| BstF5I | GGATG | 1 cut(s) | 1779 |
| BstH2I | RGCGCY | 1 cut(s) | 674 |
| BstHHI | GCGC | 1 cut(s) | 673 |
| BstMAI | GTCTC | 2 cut(s) | 323, 1289 |
| BstMCI | CGRYCG | 2 cut(s) | 531, 567 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 80, 527, 607, 639 |
| BstNI | CCWGG | 3 cut(s) | 935, 963, 1662 |
| BstNSI | RCATGY | 1 cut(s) | 376 |
| BstPI | GGTNACC | 1 cut(s) | 1094 |
| BstSCI | CCNGG | 4 cut(s) | 817, 933, 961, 1660 |
| BstSFI | CTRYAG | 2 cut(s) | 259, 1600 |
| BstSLI | GKGCMC | 1 cut(s) | 608 |
| BstV1I | GCAGC | 3 cut(s) | 1708, 1989, 1992 |
| BstV2I | GAAGAC | 1 cut(s) | 935 |
| BstX2I | RGATCY | 3 cut(s) | 1678, 1735, 1760 |
| BstYI | RGATCY | 3 cut(s) | 1678, 1735, 1760 |
| BstZI | CGGCCG | 1 cut(s) | 528 |
| BsuRI | GGCC | 4 cut(s) | 179, 530, 1190, 1825 |
| BtgZI | GCGATG | 1 cut(s) | 256 |
| BtsCI | GGATG | 1 cut(s) | 1779 |
| BtsI | GCAGTG | 5 cut(s) | 256, 608, 640, 767, 1128 |
| BtsIMutI | CAGTG | 6 cut(s) | 256, 608, 640, 767, 1128, 1632 |
| Cac8I | GCNNGC | 2 cut(s) | 81, 608 |
| CciI | TCATGA | 2 cut(s) | 51, 1384 |
| CfoI | GCGC | 1 cut(s) | 673 |
| Cfr10I | RCCGGY | 2 cut(s) | 194, 530 |
| Cfr13I | GGNCC | 2 cut(s) | 533, 1536 |
| CseI | GACGC | 2 cut(s) | 855, 1347 |
| CviAII | CATG | 7 cut(s) | 52, 373, 1385, 1571, 1695, 1849, 2006 |
| DdeI | CTNAG | 4 cut(s) | 75, 417, 680, 1685 |
| DraI | TTTAAA | 2 cut(s) | 105, 1168 |
| EaeI | YGGCCR | 2 cut(s) | 528, 1188 |
| EagI | CGGCCG | 1 cut(s) | 528 |
| Eam1104I | CTCTTC | 3 cut(s) | 506, 543, 1948 |
| EarI | CTCTTC | 3 cut(s) | 506, 543, 1948 |
| EclXI | CGGCCG | 1 cut(s) | 528 |
| Eco24I | GRGCYC | 1 cut(s) | 1374 |
| Eco31I | GGTCTC | 1 cut(s) | 323 |
| Eco47I | GGWCC | 2 cut(s) | 533, 1536 |
| Eco52I | CGGCCG | 1 cut(s) | 528 |
| Eco88I | CYCGRG | 2 cut(s) | 1365, 1756 |
| Eco91I | GGTNACC | 1 cut(s) | 1094 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1536 |
| EcoO65I | GGTNACC | 1 cut(s) | 1094 |
| EcoRII | CCWGG | 3 cut(s) | 933, 961, 1660 |
| EcoT22I | ATGCAT | 4 cut(s) | 1572, 1696, 1781, 1999 |
| EcoT38I | GRGCYC | 1 cut(s) | 1374 |
| FaeI | CATG | 7 cut(s) | 55, 376, 1388, 1574, 1698, 1852, 2009 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 536, 568 |
| FaqI | GGGAC | 5 cut(s) | 318, 1256, 1346, 1549, 1729 |
| FatI | CATG | 7 cut(s) | 51, 372, 1384, 1570, 1694, 1848, 2005 |
| FbaI | TGATCA | 2 cut(s) | 1501, 1989 |
| Fnu4HI | GCNGC | 3 cut(s) | 1722, 1978, 1981 |
| FokI | GGATG | 1 cut(s) | 1766 |
| FriOI | GRGCYC | 1 cut(s) | 1374 |
| Fsp4HI | GCNGC | 3 cut(s) | 1722, 1978, 1981 |
| FspBI | CTAG | 5 cut(s) | 71, 309, 423, 944, 2035 |
| GlaI | GCGC | 1 cut(s) | 672 |
| GluI | GCNGC | 3 cut(s) | 1722, 1978, 1981 |
| GsaI | CCCAGC | 2 cut(s) | 714, 755 |
| GsuI | CTGGAG | 2 cut(s) | 1539, 1683 |
| HaeII | RGCGCY | 1 cut(s) | 674 |
| HaeIII | GGCC | 4 cut(s) | 179, 530, 1190, 1825 |
| HapII | CCGG | 5 cut(s) | 176, 195, 531, 570, 819 |
| HgaI | GACGC | 2 cut(s) | 855, 1347 |
| HhaI | GCGC | 1 cut(s) | 673 |
| Hin1II | CATG | 7 cut(s) | 55, 376, 1388, 1574, 1698, 1852, 2009 |
| Hin6I | GCGC | 1 cut(s) | 671 |
| HinP1I | GCGC | 1 cut(s) | 671 |
| HindIII | AAGCTT | 5 cut(s) | 326, 505, 519, 1193, 1250 |
| HinfI | GANTC | 9 cut(s) | 305, 514, 1074, 1142, 1391, 1507, 1522, 1958, 2012 |
| HpaII | CCGG | 5 cut(s) | 176, 195, 531, 570, 819 |
| HphI | GGTGA | 5 cut(s) | 157, 977, 1088, 1881, 1963 |
| Hpy166II | GTNNAC | 5 cut(s) | 60, 606, 1087, 1319, 1802 |
| Hpy8I | GTNNAC | 5 cut(s) | 60, 606, 1087, 1319, 1802 |
| Hpy99I | CGWCG | 1 cut(s) | 368 |
| HpyAV | CCTTC | 8 cut(s) | 182, 562, 1061, 1109, 1232, 1391, 1702, 1706 |
| HpyCH4III | ACNGT | 4 cut(s) | 134, 368, 381, 1951 |
| HpyCH4IV | ACGT | 1 cut(s) | 450 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 80, 527, 607, 639 |
| HpyF3I | CTNAG | 4 cut(s) | 75, 417, 680, 1685 |
| HpySE526I | ACGT | 1 cut(s) | 450 |
| Hsp92II | CATG | 7 cut(s) | 55, 376, 1388, 1574, 1698, 1852, 2009 |
| HspAI | GCGC | 1 cut(s) | 671 |
| KpnI | GGTACC | 1 cut(s) | 767 |
| Ksp22I | TGATCA | 2 cut(s) | 1501, 1989 |
| LmnI | GCTCC | 5 cut(s) | 398, 572, 1377, 1558, 1988 |
| Lsp1109I | GCAGC | 3 cut(s) | 1708, 1989, 1992 |
| LweI | GCATC | 7 cut(s) | 464, 1018, 1039, 1435, 1766, 1788, 2006 |
| MaeI | CTAG | 5 cut(s) | 71, 309, 423, 944, 2035 |
| MaeII | ACGT | 1 cut(s) | 450 |
| MaeIII | GTNAC | 6 cut(s) | 375, 495, 833, 1094, 1415, 1430 |
| MbiI | CCGCTC | 1 cut(s) | 393 |
| MboII | GAAGA | 9 cut(s) | 16, 24, 516, 523, 530, 940, 980, 1400, 1935 |
| MfeI | CAATTG | 1 cut(s) | 1322 |
| MflI | RGATCY | 3 cut(s) | 1678, 1735, 1760 |
| MhlI | GDGCHC | 2 cut(s) | 608, 1374 |
| MlsI | TGGCCA | 1 cut(s) | 1190 |
| MluNI | TGGCCA | 1 cut(s) | 1190 |
| MlyI | GAGTC | 5 cut(s) | 299, 523, 1501, 1531, 1967 |
| MmeI | TCCRAC | 1 cut(s) | 1685 |
| Mox20I | TGGCCA | 1 cut(s) | 1190 |
| Mph1103I | ATGCAT | 4 cut(s) | 1572, 1696, 1781, 1999 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1251 |
| MscI | TGGCCA | 1 cut(s) | 1190 |
| MseI | TTAA | 4 cut(s) | 104, 917, 1167, 1311 |
| Msp20I | TGGCCA | 1 cut(s) | 1190 |
| MspA1I | CMGCKG | 2 cut(s) | 714, 1721 |
| MspI | CCGG | 5 cut(s) | 176, 195, 531, 570, 819 |
| MspR9I | CCNGG | 4 cut(s) | 819, 935, 963, 1662 |
| MunI | CAATTG | 1 cut(s) | 1322 |
| Mva1269I | GAATGC | 2 cut(s) | 635, 1675 |
| MvaI | CCWGG | 3 cut(s) | 935, 963, 1662 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 80, 527, 607, 639 |
| NciI | CCSGG | 1 cut(s) | 819 |
| NlaIII | CATG | 7 cut(s) | 55, 376, 1388, 1574, 1698, 1852, 2009 |
| NlaIV | GGNNCC | 4 cut(s) | 765, 1373, 1537, 1554 |
| NmuCI | GTSAC | 2 cut(s) | 1094, 1415 |
| NsiI | ATGCAT | 4 cut(s) | 1572, 1696, 1781, 1999 |
| NspI | RCATGY | 1 cut(s) | 376 |
| NspV | TTCGAA | 1 cut(s) | 1402 |
| PaeR7I | CTCGAG | 2 cut(s) | 1365, 1756 |
| PagI | TCATGA | 2 cut(s) | 51, 1384 |
| PctI | GAATGC | 2 cut(s) | 635, 1675 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1251 |
| PfeI | GAWTC | 4 cut(s) | 1074, 1142, 1391, 2012 |
| PkrI | GCNGC | 3 cut(s) | 1723, 1979, 1982 |
| PleI | GAGTC | 5 cut(s) | 299, 522, 1501, 1530, 1966 |
| PpsI | GAGTC | 5 cut(s) | 299, 522, 1501, 1530, 1966 |
| PpuMI | RGGWCCY | 1 cut(s) | 1536 |
| Psp5II | RGGWCCY | 1 cut(s) | 1536 |
| Psp6I | CCWGG | 3 cut(s) | 933, 961, 1660 |
| PspEI | GGTNACC | 1 cut(s) | 1094 |
| PspFI | CCCAGC | 2 cut(s) | 710, 751 |
| PspGI | CCWGG | 3 cut(s) | 933, 961, 1660 |
| PspN4I | GGNNCC | 4 cut(s) | 765, 1373, 1537, 1554 |
| PspPI | GGNCC | 2 cut(s) | 533, 1536 |
| PspPPI | RGGWCCY | 1 cut(s) | 1536 |
| PspXI | VCTCGAGB | 1 cut(s) | 1365 |
| PstI | CTGCAG | 1 cut(s) | 263 |
| PsuI | RGATCY | 3 cut(s) | 1678, 1735, 1760 |
| PvuII | CAGCTG | 2 cut(s) | 714, 1721 |
| SaqAI | TTAA | 4 cut(s) | 104, 917, 1167, 1311 |
| SatI | GCNGC | 3 cut(s) | 1722, 1978, 1981 |
| Sau96I | GGNCC | 2 cut(s) | 533, 1536 |
| SchI | GAGTC | 5 cut(s) | 299, 523, 1501, 1531, 1967 |
| ScrFI | CCNGG | 4 cut(s) | 819, 935, 963, 1662 |
| SduI | GDGCHC | 2 cut(s) | 608, 1374 |
| SfaNI | GCATC | 7 cut(s) | 464, 1018, 1039, 1435, 1766, 1788, 2006 |
| SfcI | CTRYAG | 2 cut(s) | 259, 1600 |
| Sfr274I | CTCGAG | 2 cut(s) | 1365, 1756 |
| SfuI | TTCGAA | 1 cut(s) | 1402 |
| SinI | GGWCC | 2 cut(s) | 533, 1536 |
| SlaI | CTCGAG | 2 cut(s) | 1365, 1756 |
| SmlI | CTYRAG | 5 cut(s) | 10, 63, 1365, 1509, 1756 |
| SmoI | CTYRAG | 5 cut(s) | 10, 63, 1365, 1509, 1756 |
| SsiI | CCGC | 2 cut(s) | 391, 567 |
| SspI | AATATT | 1 cut(s) | 2025 |
| SspMI | CTAG | 5 cut(s) | 71, 309, 423, 944, 2035 |
| StyD4I | CCNGG | 4 cut(s) | 817, 933, 961, 1660 |
| TaaI | ACNGT | 4 cut(s) | 134, 368, 381, 1951 |
| TaiI | ACGT | 1 cut(s) | 453 |
| TaqII | GACCGA | 1 cut(s) | 1573 |
| TatI | WGTACW | 2 cut(s) | 46, 1801 |
| TfiI | GAWTC | 4 cut(s) | 1074, 1142, 1391, 2012 |
| Tru1I | TTAA | 4 cut(s) | 104, 917, 1167, 1311 |
| Tru9I | TTAA | 4 cut(s) | 104, 917, 1167, 1311 |
| TscAI | CASTG | 6 cut(s) | 263, 608, 640, 774, 1128, 1639 |
| TseFI | GTSAC | 2 cut(s) | 1094, 1415 |
| TseI | GCWGC | 3 cut(s) | 1721, 1977, 1980 |
| Tsp45I | GTSAC | 2 cut(s) | 1094, 1415 |
| TspDTI | ATGAA | 7 cut(s) | 204, 733, 1260, 1278, 1373, 1400, 1401 |
| TspRI | CASTG | 6 cut(s) | 263, 608, 640, 774, 1128, 1639 |
| VneI | GTGCAC | 1 cut(s) | 604 |
| VpaK11BI | GGWCC | 2 cut(s) | 533, 1536 |
| XapI | RAATTY | 5 cut(s) | 95, 1155, 1163, 1207, 1265 |
| XbaI | TCTAGA | 1 cut(s) | 308 |
| XceI | RCATGY | 1 cut(s) | 376 |
| XhoI | CTCGAG | 2 cut(s) | 1365, 1756 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1251 |
| XspI | CTAG | 5 cut(s) | 71, 309, 423, 944, 2035 |
| Zsp2I | ATGCAT | 4 cut(s) | 1572, 1696, 1781, 1999 |