Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001242.1

Orthogroup ID

OG0000086

Physical Location & Seq

Genomic Coordinates Forward (+)

26639 .. 29676

Gene Structure 3038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001242.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2001 bp

atggttttctcatcatcaagcagaaaatggtttactcatctcagtttttcattgataaaaattgtgttgctcgcagctcaaaccactgatcaaccccctcttgtgccattctgtaacgtcacaggtaactacaccgctgctagctcttataagagaaacctcgatgctcttctcccctttctcgccactaaaagcaacgtttacggctacggcttttacaagtcctccggtggggaaaactccgacgaagtttttgcagtcgggctctgtagaggagacgttgaggtcgttgattgcggcagttgcatcggcaacatgatacagtctctcacgaaggcctgtcctgttcagaaggaggccgttgggtggtacgacaagtgcatgctacgctactcgtatcaacccatatatgggagcctcacattatttcctacttatagtatgttgagcacagaaaacatgtcgtcaaaactagtggatgagttcaaccaaaagcttcaggtcttgttggaaagactatctagtcaagctgctgcagcaggtaccgatcgtaagtacgccgtaggcgcgcaaaacacaagcgacgtcaatgtaaccatatatggactcgcacagtgtactccagatttgtctgcccaagcctgcactaaatgcttagatttaactttagcagccatgagaggatgttgtttagggatgatgggtgggagagtttttaaacccagctgttacttaagatatgaaactagagcatttatacagattgcagctgaggcacccgcaccttcgacaccattagcaacaccgacctctcctccaggaaagaagaagagtaatacatctcgaagaaaagtcatcaccactgtgacaattgttgttcctctggtggtactgattgtatccatatgggtttatttgagattagttaggaagacaaaggaaaagtttgaagatgaaatcatgagcagagaagccttacaatttgactttgactccattagagttgctacaaataacttttctgaagcaaatacacttgggcgaggcggatttggtgctgtttacaagggtaggctttggaacgaagaagatatagcagtaaaaagactttctaaagattctgcacaaggagacatagaatttaaaaatgaggtgatattagtggccaagcttcaacaccggaacttggttaggctcctcggtttctgtctggaaagaaatgaaagacttcttgtctatgagtttgtcccaaacgcaagtctcgatcatttcatatttgatccagtcaagcgtgcagatttgaattgggaaactcgttacaaaatcatactaggcattgggcgcgggcttctttaccttcatgaagattctcgtcttagaattatccaccgtgatctcaaagccagtaatattctattagatgcagaattgaatcccaaaattgctgattttggcatggcaagattgtttaatatcgatcaaacacaagctgaaactagtcgagttgtgggaacctacggatacatggcaccggagtatgttatgcgtggacacttttctgtgaagtctgatgtgtatagctttggtgtgttggtcttggagataataagcggacagaaaaatacttcctttcatcatgaaggaaaattggaggatcttcttggctatgcatggaatagttggaaggaagggacatcttcaaacttgatagatcacatgttgagaactggttcaaggccggaaataatgagatgcattcacatcggactgttgtgtgtgcagcgaagtatagctgataggccaactatgactgcagttattcaaatgcttaccagcaactctgttgatctcccagtaccctcacaaccagcatttttcatgtacagtcatggcattggatcctcatctgacatgtttttgggatttgagagtaactcaggattaacattgtctgatcattccaaaagcaactctgcccataaacctatacttgaagaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0033993 GO:0036211 GO:0042221 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0097305 GO:0098542 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

666

Amino Acids

74.16

Weight (kDa)

8.46

Isoelectric Point (pI)

38.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21230 AT4G21400 AT4G21400 AT4G21400 AT4G21400 AT4G21400 AT4G21400 AT4G21400 AT4G21400 AT4G21410 AT4G21410 AT4G21410 AT4G38830
fragaria_vesca	FvH4_2g29861 FvH4_2g29861 FvH4_2g29870 FvH4_2g29870 FvH4_2g29870 FvH4_2g29871 FvH4_2g29871 FvH4_2g29875 FvH4_2g29878 FvH4_3g02833 FvH4_3g02833 FvH4_3g02834 FvH4_3g02870 FvH4_3g19870 FvH4_3g19870 FvH4_3g19870 FvH4_3g19870 FvH4_3g20010
malus_domestica	MD00G1101400.v1.1 MD00G1101700.v1.1 MD01G1027900.v1.1 MD02G1101400.v1.1 MD05G1336800.v1.1 MD05G1337000.v1.1 MD05G1337300.v1.1 MD05G1337400.v1.1 MD05G1337500.v1.1 MD07G1014000.v1.1 MD08G1139800.v1.1 MD08G1139900.v1.1 MD08G1140000.v1.1 MD08G1140100.v1.1 MD08G1140200.v1.1 MD08G1140400.v1.1 MD10G1312200.v1.1 MD10G1312500.v1.1 MD15G1117400.v1.1
prunus_persica	Prupe.1G174500_v2.0.a1 Prupe.1G468600_v2.0.a1 Prupe.1G469000_v2.0.a1 Prupe.1G469100_v2.0.a1 Prupe.1G469200_v2.0.a1 Prupe.1G469300_v2.0.a1 Prupe.4G027900_v2.0.a1 Prupe.4G028000_v2.0.a1 Prupe.4G028100_v2.0.a1 Prupe.4G028100_v2.0.a1 Prupe.4G028200_v2.0.a1 Prupe.4G028600_v2.0.a1 Prupe.4G028700_v2.0.a1 Prupe.4G028700_v2.0.a1 Prupe.4G028700_v2.0.a1 Prupe.4G028700_v2.0.a1 Prupe.4G028800_v2.0.a1 Prupe.4G100700_v2.0.a1 Prupe.6G183400_v2.0.a1 Prupe.6G183500_v2.0.a1 Prupe.6G183600_v2.0.a1 Prupe.6G184100_v2.0.a1 Prupe.6G184400_v2.0.a1 Prupe.6G184500_v2.0.a1
pyrus_communis	pycom01g05620 pycom01g05630 pycom05g30820 pycom05g30840 pycom05g30860 pycom05g30880 pycom05g30890 pycom05g30900 pycom08g11780 pycom08g11850 pycom10g26340 pycom10g26350 pycom10g26360 pycom10g26400 pycom10g26410 pycom15g10580
rosa_chinensis	RchiOBHm_Chr1g0313011 RchiOBHm_Chr1g0319461 RchiOBHm_Chr1g0319511 RchiOBHm_Chr2g0114611 RchiOBHm_Chr2g0114631 RchiOBHm_Chr2g0114691 RchiOBHm_Chr2g0114741 RchiOBHm_Chr2g0114751 RchiOBHm_Chr2g0114781 RchiOBHm_Chr2g0114791 RchiOBHm_Chr3g0494511 RchiOBHm_Chr3g0494521 RchiOBHm_Chr4g0413731 RchiOBHm_Chr5g0004271 RchiOBHm_Chr5g0004291 RchiOBHm_Chr5g0004301 RchiOBHm_Chr5g0004341 RchiOBHm_Chr5g0004351 RchiOBHm_Chr5g0004371 RchiOBHm_Chr5g0033301 RchiOBHm_Chr5g0033311 RchiOBHm_Chr5g0033341 RchiOBHm_Chr5g0033361 RchiOBHm_Chr5g0033391 RchiOBHm_Chr5g0033401 RchiOBHm_Chr5g0033431 RchiOBHm_Chr5g0033451 RchiOBHm_Chr5g0033461 RchiOBHm_Chr5g0033531 RchiOBHm_Chr5g0033541 RchiOBHm_Chr5g0033711 RchiOBHm_Chr5g0033851 RchiOBHm_Chr5g0033861 RchiOBHm_Chr5g0033871 RchiOBHm_Chr5g0054051 RchiOBHm_Chr5g0069631 RchiOBHm_Chr6g0265231 RchiOBHm_Chr6g0298941 RchiOBHm_Chr6g0298951 RchiOBHm_Chr6g0299001 RchiOBHm_Chr6g0299011 RchiOBHm_Chr6g0299021
rosa_laevigata	RLG00000008198 RLG00000010335 RLG00000011468 RLG00000011471 RLG00000014070 RLG00000014071 RLG00000018116 RLG00000018125 RLG00000031219 RLG00000031220 RLG00000031221 RLG00000031222 RLG00000031224 RLG00000033469 RLG00000033471 RLG00000033473 RLG00000033476 RLG00000033477 RLG00000033479 RLG00000033480 RLG00000033483 RLG00000035638
rosa_multiflora	Rmu_co8063382.1_g000001 Rmu_co8095246.1_g000001 Rmu_sc0000370.1_g000009 Rmu_sc0000370.1_g000019 Rmu_sc0000371.1_g000023 Rmu_sc0000371.1_g000036 Rmu_sc0000433.1_g000023 Rmu_sc0000433.1_g000024 Rmu_sc0000545.1_g000004 Rmu_sc0000981.1_g000001 Rmu_sc0001150.1_g000032 Rmu_sc0001242.1_g000004 Rmu_sc0001242.1_g000008 Rmu_sc0001522.1_g000035 Rmu_sc0002206.1_g000008 Rmu_sc0002206.1_g000021 Rmu_sc0002453.1_g000008 Rmu_sc0002453.1_g000018 Rmu_sc0003286.1_g000007 Rmu_sc0003286.1_g000013 Rmu_sc0004133.1_g000005 Rmu_sc0005660.1_g000005 Rmu_sc0005660.1_g000019 Rmu_sc0005660.1_g000025 Rmu_sc0005870.1_g000017 Rmu_sc0005870.1_g000022 Rmu_sc0006083.1_g000003 Rmu_sc0008092.1_g000016 Rmu_sc0008210.1_g000007 Rmu_sc0009715.1_g000001 Rmu_sc0011893.1_g000003 Rmu_sc0011893.1_g000004 Rmu_sc0015325.1_g000002 Rmu_sc0029922.1_g000001 Rmu_ssc0000359.1_g000017 Rmu_ssc0000424.1_g000009
rosa_roxburghii	Rroxscaffold_175G00432170 Rroxscaffold_1G00022110 Rroxscaffold_1G00046520 Rroxscaffold_1G00046550 Rroxscaffold_1G00046600 Rroxscaffold_1G00046650 Rroxscaffold_1G00046680 Rroxscaffold_1G00071130 Rroxscaffold_1G00071380 Rroxscaffold_1G00071410 Rroxscaffold_2G00130310 Rroxscaffold_2G00130320 Rroxscaffold_2G00130330 Rroxscaffold_4G00328340 Rroxscaffold_4G00328360 Rroxscaffold_4G00328370 Rroxscaffold_5G00357650 Rroxscaffold_7G00156890 Rroxscaffold_7G00169080 Rroxscaffold_7G00169090 Rroxscaffold_7G00169100 Rroxscaffold_7G00169170 Rroxscaffold_7G00169190
rosa_rugosa	Rorug01G0027900 Rorug01G0130600 Rorug02G0190700 Rorug04G0411000 Rorug04G0411000 Rorug04G0411200 Rorug04G0411300 Rorug04G0411400 Rorug04G0411500 Rorug05G0139300 Rorug05G0139500 Rorug05G0139800 Rorug05G0139900 Rorug05G0187000 Rorug05G0187000 Rorug05G0187000 Rorug05G0398900 Rorug06G0034600 Rorug06G0283900 Rorug06G0284000 Rorug06G0284100 Rorug06G0394700
rosa_samantha	Rh1BG036800 Rh1CG040700 Rh1CG040800 Rh1DG000200 Rh1DG028900 Rh1DG090600 Rh2AG248900 Rh2CG252600 Rh2CG253100 Rh2CG253500 Rh2CG253600 Rh2CG253900 Rh4DG177700 Rh5CG041500 Rh5CG041700 Rh5CG042100 Rh5CG260400 Rh5CG260500 Rh5CG260600 Rh5CG260900 Rh5CG261100 Rh5DG037300 Rh5DG037400 Rh5DG037500 Rh5DG236800 Rh5DG236900 Rh5DG237100 Rh5DG237500 Rh5DG237600 Rh5DG237700 Rh5DG241100 Rh6CG134500 Rh6CG409700 Rh6CG409800 Rh6CG410100 Rh6DG120900 Rh6DG396500 Rh6DG396600 Rh6DG396700 Rh6DG514400
rosa_wichuraiana	Rw1G003200 Rw1G003210 Rw1G003230 Rw2G019350 Rw4G015240 Rw5G003500 Rw5G003520 Rw5G003530 Rw5G003690 Rw5G003720 Rw5G003730 Rw5G021090 Rw5G021100 Rw5G021110 Rw5G021120 Rw5G021130 Rw6G011870 Rw6G034630 Rw7G038700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	150
AasI	GACNNNNNNGTC	2 cut(s)	284, 522
AatII	GACGTC	1 cut(s)	588
Acc36I	ACCTGC	1 cut(s)	530
Acc65I	GGTACC	1 cut(s)	542
AccB1I	GGYRCC	3 cut(s)	542, 775, 1528
AccII	CGCG	2 cut(s)	569, 1344
AciI	CCGC	6 cut(s)	135, 297, 780, 1047, 1344, 1611
AclI	AACGTT	1 cut(s)	198
AclWI	GGATC	4 cut(s)	1274, 1662, 1893, 1906
AcoI	YGGCCR	1 cut(s)	1164
AcsI	RAATTY	1 cut(s)	1139
AcuI	CTGAAG	2 cut(s)	482, 1044
AcyI	GRCGYC	1 cut(s)	585
AfaI	GTAC	7 cut(s)	371, 544, 557, 619, 891, 1857, 1883
AfiI	CCNNNNNNNGG	5 cut(s)	231, 366, 410, 411, 1186
AflII	CTTAAG	1 cut(s)	733
AflIII	ACRYGT	3 cut(s)	459, 1716, 1911
AgsI	TTSAA	9 cut(s)	487, 950, 1175, 1303, 1432, 1701, 1734, 1823, 1994
AhdI	GACNNNNNGTC	1 cut(s)	1232
AhlI	ACTAGT	2 cut(s)	472, 1496
AjnI	CCWGG	1 cut(s)	817
AleI	CACNNNNGTG	1 cut(s)	863
Alw21I	GWGCWC	1 cut(s)	452
Alw26I	GTCTC	4 cut(s)	270, 330, 1125, 1265
AlwI	GGATC	4 cut(s)	1274, 1662, 1893, 1906
AoxI	GGCC	5 cut(s)	336, 357, 1164, 1736, 1799
ApeKI	GCWGC	8 cut(s)	74, 137, 530, 533, 536, 671, 767, 1780
ApoI	RAATTY	1 cut(s)	1139
ArsI	GACNNNNNNTTYG	2 cut(s)	236, 268
Asp700I	GAANNNNTTC	2 cut(s)	1227, 1729
Asp718I	GGTACC	1 cut(s)	542
AspLEI	GCGC	3 cut(s)	569, 571, 1344
AsuHPI	GGTGA	2 cut(s)	850, 1165
AsuNHI	GCTAGC	1 cut(s)	140
BalI	TGGCCA	1 cut(s)	1166
BamHI	GGATCC	1 cut(s)	1898
BanI	GGYRCC	3 cut(s)	542, 775, 1528
BanII	GRGCYC	1 cut(s)	267
BbsI	GAAGAC	1 cut(s)	938
Bbv12I	GWGCWC	1 cut(s)	452
BbvCI	CCTCAGC	1 cut(s)	771
BbvI	GCAGC	8 cut(s)	86, 124, 517, 520, 548, 683, 779, 1792
BccI	CCATC	1 cut(s)	694
BceAI	ACGGC	4 cut(s)	220, 226, 344, 545
BcgI	CGANNNNNNTGC	6 cut(s)	236, 270, 289, 323, 1744, 1778
BciT130I	CCWGG	1 cut(s)	819
BciVI	GTATCC	2 cut(s)	910, 1514
BclI	TGATCA	2 cut(s)	88, 1954
BcoDI	GTCTC	4 cut(s)	270, 330, 1125, 1265
BcuI	ACTAGT	2 cut(s)	472, 1496
BfaI	CTAG	6 cut(s)	141, 473, 522, 747, 1331, 1497
BfmI	CTRYAG	3 cut(s)	268, 534, 1812
BfrI	CTTAAG	1 cut(s)	733
BfuAI	ACCTGC	1 cut(s)	530
BfuI	GTATCC	2 cut(s)	910, 1514
BisI	GCNGC	9 cut(s)	75, 138, 298, 531, 534, 537, 672, 768, 1781
BlsI	GCNGC	9 cut(s)	76, 139, 299, 532, 535, 538, 673, 769, 1782
Bme1390I	CCNGG	1 cut(s)	819
BmeRI	GACNNNNNGTC	1 cut(s)	1232
BmiI	GGNNCC	7 cut(s)	416, 544, 777, 1196, 1513, 1530, 1900
BmrFI	CCNGG	1 cut(s)	819
BmrI	ACTGGG	1 cut(s)	1847
BmsI	GCATC	4 cut(s)	154, 315, 1411, 1742
BmtI	GCTAGC	1 cut(s)	144
BmuI	ACTGGG	1 cut(s)	1847
BpiI	GAAGAC	1 cut(s)	938
BplI	GAGNNNNNCTC	2 cut(s)	1919, 1951
BpmI	CTGGAG	2 cut(s)	606, 801
Bpu10I	CCTNAGC	1 cut(s)	771
Bsa29I	ATCGAT	1 cut(s)	1476
BsaBI	GATNNNNATC	1 cut(s)	1903
BsaHI	GRCGYC	1 cut(s)	585
BsaJI	CCNNGG	1 cut(s)	1198
BsaWI	WCCGGW	3 cut(s)	227, 1179, 1531
BsaXI	ACNNNNNCTCC	6 cut(s)	209, 239, 799, 829, 977, 1007
Bsc4I	CCNNNNNNNGG	5 cut(s)	231, 366, 410, 411, 1186
Bse1I	ACTGG	4 cut(s)	1283, 1404, 1732, 1853
Bse8I	GATNNNNATC	1 cut(s)	1903
BseBI	CCWGG	1 cut(s)	819
BseCI	ATCGAT	1 cut(s)	1476
BseDI	CCNNGG	1 cut(s)	1198
BseGI	GGATG	3 cut(s)	484, 689, 702
BseJI	GATNNNNATC	1 cut(s)	1903
BseLI	CCNNNNNNNGG	5 cut(s)	231, 366, 410, 411, 1186
BseMII	CTCAG	3 cut(s)	55, 762, 1950
BseNI	ACTGG	4 cut(s)	1283, 1404, 1732, 1853
BsePI	GCGCGC	1 cut(s)	567
BseRI	GAGGAG	3 cut(s)	288, 804, 1187
BseXI	GCAGC	8 cut(s)	86, 124, 517, 520, 548, 683, 779, 1792
BseYI	CCCAGC	1 cut(s)	722
BsgI	GTGCAG	4 cut(s)	628, 1107, 1314, 1799
Bsh1236I	CGCG	2 cut(s)	569, 1344
Bsh1285I	CGRYCG	1 cut(s)	550
BshFI	GGCC	5 cut(s)	338, 359, 1166, 1738, 1801
BshNI	GGYRCC	3 cut(s)	542, 775, 1528
BshVI	ATCGAT	1 cut(s)	1476
BsiEI	CGRYCG	1 cut(s)	550
BsiHKAI	GWGCWC	1 cut(s)	452
BsiSI	CCGG	4 cut(s)	228, 1180, 1532, 1739
BslFI	GGGAC	2 cut(s)	1232, 1705
BslI	CCNNNNNNNGG	5 cut(s)	231, 366, 410, 411, 1186
BsmAI	GTCTC	4 cut(s)	270, 330, 1125, 1265
BsmBI	CGTCTC	1 cut(s)	270
BsmFI	GGGAC	2 cut(s)	1232, 1705
BsmI	GAATGC	1 cut(s)	1755
BsnI	GGCC	5 cut(s)	338, 359, 1166, 1738, 1801
Bsp1286I	GDGCHC	2 cut(s)	267, 452
Bsp1407I	TGTACA	1 cut(s)	1881
BspACI	CCGC	6 cut(s)	135, 297, 780, 1047, 1344, 1611
BspANI	GGCC	5 cut(s)	338, 359, 1166, 1738, 1801
BspCNI	CTCAG	3 cut(s)	54, 763, 1949
BspDI	ATCGAT	1 cut(s)	1476
BspFNI	CGCG	2 cut(s)	569, 1344
BspHI	TCATGA	3 cut(s)	960, 1360, 1636
BspLI	GGNNCC	7 cut(s)	416, 544, 777, 1196, 1513, 1530, 1900
BspMAI	CTGCAG	2 cut(s)	538, 1816
BspMI	ACCTGC	1 cut(s)	530
BspOI	GCTAGC	1 cut(s)	144
BspPI	GGATC	4 cut(s)	1274, 1662, 1893, 1906
BspQI	GCTCTTC	1 cut(s)	174
BspT107I	GGYRCC	3 cut(s)	542, 775, 1528
BspTI	CTTAAG	1 cut(s)	733
BsrGI	TGTACA	1 cut(s)	1881
BsrI	ACTGG	4 cut(s)	1283, 1404, 1732, 1853
BssECI	CCNNGG	1 cut(s)	1198
BssHII	GCGCGC	1 cut(s)	567
BssNI	GRCGYC	1 cut(s)	585
Bst2UI	CCWGG	1 cut(s)	819
Bst4CI	ACNGT	6 cut(s)	324, 615, 865, 1391, 1770, 1886
Bst6I	CTCTTC	2 cut(s)	174, 824
BstACI	GRCGYC	1 cut(s)	585
BstAFI	CTTAAG	1 cut(s)	733
BstAPI	GCANNNNNTGC	1 cut(s)	651
BstAUI	TGTACA	1 cut(s)	1881
BstC8I	GCNNGC	7 cut(s)	72, 142, 383, 569, 643, 1293, 1346
BstDEI	CTNAG	5 cut(s)	41, 655, 771, 1376, 1936
BstF5I	GGATG	3 cut(s)	484, 689, 702
BstFNI	CGCG	2 cut(s)	569, 1344
BstHHI	GCGC	3 cut(s)	569, 571, 1344
BstMAI	GTCTC	4 cut(s)	270, 330, 1125, 1265
BstMCI	CGRYCG	1 cut(s)	550
BstMWI	GCNNNNNNNGC	7 cut(s)	303, 387, 536, 566, 651, 773, 1341
BstNI	CCWGG	1 cut(s)	819
BstNSI	RCATGY	4 cut(s)	385, 463, 1720, 1915
BstSCI	CCNGG	1 cut(s)	817
BstSFI	CTRYAG	3 cut(s)	268, 534, 1812
BstUI	CGCG	2 cut(s)	569, 1344
BstV1I	GCAGC	8 cut(s)	86, 124, 517, 520, 548, 683, 779, 1792
BstV2I	GAAGAC	1 cut(s)	938
BstX2I	RGATCY	2 cut(s)	1654, 1898
BstYI	RGATCY	2 cut(s)	1654, 1898
Bsu15I	ATCGAT	1 cut(s)	1476
BsuI	GTATCC	2 cut(s)	910, 1514
BsuRI	GGCC	5 cut(s)	338, 359, 1166, 1738, 1801
BsuTUI	ATCGAT	1 cut(s)	1476
BtsCI	GGATG	3 cut(s)	484, 689, 702
BtsIMutI	CAGTG	3 cut(s)	84, 620, 861
BveI	ACCTGC	1 cut(s)	530
Cac8I	GCNNGC	7 cut(s)	72, 142, 383, 569, 643, 1293, 1346
CciI	TCATGA	3 cut(s)	960, 1360, 1636
CfoI	GCGC	3 cut(s)	569, 571, 1344
ClaI	ATCGAT	1 cut(s)	1476
Csp6I	GTAC	7 cut(s)	370, 543, 556, 618, 890, 1856, 1882
CspCI	CAANNNNNGTGG	2 cut(s)	456, 491
CviQI	GTAC	7 cut(s)	370, 543, 556, 618, 890, 1856, 1882
DdeI	CTNAG	5 cut(s)	41, 655, 771, 1376, 1936
DraI	TTTAAA	2 cut(s)	718, 1144
DrdI	GACNNNNNNGTC	2 cut(s)	284, 522
DriI	GACNNNNNGTC	1 cut(s)	1232
DseDI	GACNNNNNNGTC	2 cut(s)	284, 522
EaeI	YGGCCR	1 cut(s)	1164
Eam1104I	CTCTTC	2 cut(s)	174, 824
Eam1105I	GACNNNNNGTC	1 cut(s)	1232
EarI	CTCTTC	2 cut(s)	174, 824
EciI	GGCGGA	1 cut(s)	1062
Eco147I	AGGCCT	1 cut(s)	338
Eco24I	GRGCYC	1 cut(s)	267
Eco57I	CTGAAG	2 cut(s)	482, 1044
EcoRII	CCWGG	1 cut(s)	817
EcoT22I	ATGCAT	2 cut(s)	1672, 1757
EcoT38I	GRGCYC	1 cut(s)	267
Esp3I	CGTCTC	1 cut(s)	270
FaqI	GGGAC	2 cut(s)	1232, 1705
FauI	CCCGC	2 cut(s)	787, 1337
FauNDI	CATATG	1 cut(s)	905
FbaI	TGATCA	2 cut(s)	88, 1954
Fnu4HI	GCNGC	9 cut(s)	75, 138, 298, 531, 534, 537, 672, 768, 1781
FokI	GGATG	3 cut(s)	491, 696, 709
FriOI	GRGCYC	1 cut(s)	267
Fsp4HI	GCNGC	9 cut(s)	75, 138, 298, 531, 534, 537, 672, 768, 1781
FspBI	CTAG	6 cut(s)	141, 473, 522, 747, 1331, 1497
GlaI	GCGC	3 cut(s)	568, 570, 1343
GluI	GCNGC	9 cut(s)	75, 138, 298, 531, 534, 537, 672, 768, 1781
GsaI	CCCAGC	1 cut(s)	726
GsuI	CTGGAG	2 cut(s)	606, 801
HaeIII	GGCC	5 cut(s)	338, 359, 1166, 1738, 1801
HapII	CCGG	4 cut(s)	228, 1180, 1532, 1739
HhaI	GCGC	3 cut(s)	569, 571, 1344
Hin1I	GRCGYC	1 cut(s)	585
Hin6I	GCGC	3 cut(s)	567, 569, 1342
HinP1I	GCGC	3 cut(s)	567, 569, 1342
HindIII	AAGCTT	2 cut(s)	494, 1169
HinfI	GANTC	5 cut(s)	606, 992, 1118, 1367, 1432
HpaII	CCGG	4 cut(s)	228, 1180, 1532, 1739
HphI	GGTGA	2 cut(s)	850, 1165
Hpy166II	GTNNAC	5 cut(s)	33, 202, 618, 1063, 1550
Hpy188I	TCNGA	7 cut(s)	244, 351, 1024, 1570, 1766, 1909, 1954
Hpy188III	TCNNGA	9 cut(s)	331, 623, 843, 961, 1211, 1262, 1361, 1637, 1938
Hpy8I	GTNNAC	5 cut(s)	33, 202, 618, 1063, 1550
Hpy99I	CGWCG	2 cut(s)	248, 587
HpyAV	CCTTC	7 cut(s)	328, 346, 795, 1367, 1634, 1678, 1682
HpyCH4III	ACNGT	6 cut(s)	324, 615, 865, 1391, 1770, 1886
HpyCH4IV	ACGT	4 cut(s)	117, 198, 279, 585
HpyF10VI	GCNNNNNNNGC	7 cut(s)	303, 387, 536, 566, 651, 773, 1341
HpyF3I	CTNAG	5 cut(s)	41, 655, 771, 1376, 1936
HpySE526I	ACGT	4 cut(s)	117, 198, 279, 585
Hsp92I	GRCGYC	1 cut(s)	585
HspAI	GCGC	3 cut(s)	567, 569, 1342
KpnI	GGTACC	1 cut(s)	546
Ksp22I	TGATCA	2 cut(s)	88, 1954
LguI	GCTCTTC	1 cut(s)	174
LmnI	GCTCC	2 cut(s)	414, 1200
Lsp1109I	GCAGC	8 cut(s)	86, 124, 517, 520, 548, 683, 779, 1792
LweI	GCATC	4 cut(s)	154, 315, 1411, 1742
MaeI	CTAG	6 cut(s)	141, 473, 522, 747, 1331, 1497
MaeII	ACGT	4 cut(s)	117, 198, 279, 585
MaeIII	GTNAC	8 cut(s)	113, 118, 125, 592, 728, 865, 1316, 1931
MfeI	CAATTG	1 cut(s)	870
MflI	RGATCY	2 cut(s)	1654, 1898
MhlI	GDGCHC	2 cut(s)	267, 452
MlsI	TGGCCA	1 cut(s)	1166
MluCI	AATT	9 cut(s)	60, 870, 980, 1139, 1303, 1380, 1427, 1440, 1646
MluNI	TGGCCA	1 cut(s)	1166
MlyI	GAGTC	2 cut(s)	600, 986
MmeI	TCCRAC	3 cut(s)	267, 489, 1661
Mox20I	TGGCCA	1 cut(s)	1166
Mph1103I	ATGCAT	2 cut(s)	1672, 1757
MroXI	GAANNNNTTC	2 cut(s)	1227, 1729
MscI	TGGCCA	1 cut(s)	1166
MseI	TTAA	6 cut(s)	662, 717, 734, 1143, 1470, 1943
MslI	CAYNNNNRTG	1 cut(s)	863
Msp20I	TGGCCA	1 cut(s)	1166
MspA1I	CMGCKG	3 cut(s)	137, 726, 770
MspCI	CTTAAG	1 cut(s)	733
MspI	CCGG	4 cut(s)	228, 1180, 1532, 1739
MspR9I	CCNGG	1 cut(s)	819
MunI	CAATTG	1 cut(s)	870
Mva1269I	GAATGC	1 cut(s)	1755
MvaI	CCWGG	1 cut(s)	819
MvnI	CGCG	2 cut(s)	569, 1344
MwoI	GCNNNNNNNGC	7 cut(s)	303, 387, 536, 566, 651, 773, 1341
NdeI	CATATG	1 cut(s)	905
NheI	GCTAGC	1 cut(s)	140
NlaIV	GGNNCC	7 cut(s)	416, 544, 777, 1196, 1513, 1530, 1900
NmuCI	GTSAC	2 cut(s)	118, 865
NsiI	ATGCAT	2 cut(s)	1672, 1757
NspI	RCATGY	4 cut(s)	385, 463, 1720, 1915
OliI	CACNNNNGTG	1 cut(s)	863
PaeI	GCATGC	1 cut(s)	385
PagI	TCATGA	3 cut(s)	960, 1360, 1636
PauI	GCGCGC	1 cut(s)	567
PceI	AGGCCT	1 cut(s)	338
PciI	ACATGT	3 cut(s)	459, 1716, 1911
PciSI	GCTCTTC	1 cut(s)	174
PcsI	WCGNNNNNNNCGW	2 cut(s)	285, 1260
PctI	GAATGC	1 cut(s)	1755
PdmI	GAANNNNTTC	2 cut(s)	1227, 1729
PfeI	GAWTC	3 cut(s)	1118, 1367, 1432
PfoI	TCCNGGA	1 cut(s)	817
PkrI	GCNGC	9 cut(s)	76, 139, 299, 532, 535, 538, 673, 769, 1782
Ple19I	CGATCG	1 cut(s)	550
PleI	GAGTC	2 cut(s)	600, 986
PpsI	GAGTC	2 cut(s)	600, 986
PscI	ACATGT	3 cut(s)	459, 1716, 1911
PsiI	TTATAA	1 cut(s)	150
Psp1406I	AACGTT	1 cut(s)	198
Psp6I	CCWGG	1 cut(s)	817
PspFI	CCCAGC	1 cut(s)	722
PspGI	CCWGG	1 cut(s)	817
PspN4I	GGNNCC	7 cut(s)	416, 544, 777, 1196, 1513, 1530, 1900
PstI	CTGCAG	2 cut(s)	538, 1816
PsuI	RGATCY	2 cut(s)	1654, 1898
PteI	GCGCGC	1 cut(s)	567
PvuI	CGATCG	1 cut(s)	550
PvuII	CAGCTG	2 cut(s)	726, 770
RsaI	GTAC	7 cut(s)	371, 544, 557, 619, 891, 1857, 1883
RsaNI	GTAC	7 cut(s)	370, 543, 556, 618, 890, 1856, 1882
RseI	CAYNNNNRTG	1 cut(s)	863
SapI	GCTCTTC	1 cut(s)	174
SaqAI	TTAA	6 cut(s)	662, 717, 734, 1143, 1470, 1943
SatI	GCNGC	9 cut(s)	75, 138, 298, 531, 534, 537, 672, 768, 1781
SchI	GAGTC	2 cut(s)	600, 986
ScrFI	CCNGG	1 cut(s)	819
SduI	GDGCHC	2 cut(s)	267, 452
SfaNI	GCATC	4 cut(s)	154, 315, 1411, 1742
SfcI	CTRYAG	3 cut(s)	268, 534, 1812
SmiMI	CAYNNNNRTG	1 cut(s)	863
SmlI	CTYRAG	1 cut(s)	733
SmoI	CTYRAG	1 cut(s)	733
SpeI	ACTAGT	2 cut(s)	472, 1496
SphI	GCATGC	1 cut(s)	385
Sse9I	AATT	9 cut(s)	60, 870, 980, 1139, 1303, 1380, 1427, 1440, 1646
SseBI	AGGCCT	1 cut(s)	338
SsiI	CCGC	6 cut(s)	135, 297, 780, 1047, 1344, 1611
SspI	AATATT	1 cut(s)	1411
SspMI	CTAG	6 cut(s)	141, 473, 522, 747, 1331, 1497
StuI	AGGCCT	1 cut(s)	338
StyD4I	CCNGG	1 cut(s)	817
TaaI	ACNGT	6 cut(s)	324, 615, 865, 1391, 1770, 1886
TaiI	ACGT	4 cut(s)	120, 201, 282, 588
TaqI	TCGA	6 cut(s)	162, 788, 844, 1263, 1476, 1501
TasI	AATT	9 cut(s)	60, 870, 980, 1139, 1303, 1380, 1427, 1440, 1646
TatI	WGTACW	2 cut(s)	617, 1881
TauI	GCSGC	1 cut(s)	300
TfiI	GAWTC	3 cut(s)	1118, 1367, 1432
Tru1I	TTAA	6 cut(s)	662, 717, 734, 1143, 1470, 1943
Tru9I	TTAA	6 cut(s)	662, 717, 734, 1143, 1470, 1943
TscAI	CASTG	3 cut(s)	91, 620, 868
TseFI	GTSAC	2 cut(s)	118, 865
TseI	GCWGC	8 cut(s)	74, 137, 530, 533, 536, 671, 767, 1780
Tsp45I	GTSAC	2 cut(s)	118, 865
TspGWI	ACGGA	1 cut(s)	1533
TspRI	CASTG	3 cut(s)	91, 620, 868
Vha464I	CTTAAG	1 cut(s)	733
XapI	RAATTY	1 cut(s)	1139
XceI	RCATGY	4 cut(s)	385, 463, 1720, 1915
XmnI	GAANNNNTTC	2 cut(s)	1227, 1729
XspI	CTAG	6 cut(s)	141, 473, 522, 747, 1331, 1497
ZraI	GACGTC	1 cut(s)	586
Zsp2I	ATGCAT	2 cut(s)	1672, 1757

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.