Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000545.1

Orthogroup ID

OG0000086

Physical Location & Seq

Genomic Coordinates Forward (+)

19101 .. 19484

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000545.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

atggtcttatgcacttcggaagctgaattttgctggagatgtgccgatttcggcaattacattaatgacagcatcttccaacaaaacctcatcagcctcctctcctccttttccaacacttcccaaaaccaagccaactatggctttcacaactcttctctcggacaaggatccaacaaagttaatgccattgcattgtgcagaggagacctcggactcgaagattgtcgtagctgtctcaactactccactcagagtctcatgcgaaactgttcatataaaacggaagcaatcttatgggcagagccttgcatggtacggtactctcaagacttaatatttggtattgaggacgaggatcctgttgggtctcattcaggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

127

Amino Acids

14.12

Weight (kDa)

4.52

Isoelectric Point (pI)

50.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21230 AT4G21400 AT4G21400 AT4G21400 AT4G21400 AT4G21400 AT4G21400 AT4G21400 AT4G21400 AT4G21410 AT4G21410 AT4G21410 AT4G38830
fragaria_vesca	FvH4_2g29861 FvH4_2g29861 FvH4_2g29870 FvH4_2g29870 FvH4_2g29870 FvH4_2g29871 FvH4_2g29871 FvH4_2g29875 FvH4_2g29878 FvH4_3g02833 FvH4_3g02833 FvH4_3g02834 FvH4_3g02870 FvH4_3g19870 FvH4_3g19870 FvH4_3g19870 FvH4_3g19870 FvH4_3g20010
malus_domestica	MD00G1101400.v1.1 MD00G1101700.v1.1 MD01G1027900.v1.1 MD02G1101400.v1.1 MD05G1336800.v1.1 MD05G1337000.v1.1 MD05G1337300.v1.1 MD05G1337400.v1.1 MD05G1337500.v1.1 MD07G1014000.v1.1 MD08G1139800.v1.1 MD08G1139900.v1.1 MD08G1140000.v1.1 MD08G1140100.v1.1 MD08G1140200.v1.1 MD08G1140400.v1.1 MD10G1312200.v1.1 MD10G1312500.v1.1 MD15G1117400.v1.1
prunus_persica	Prupe.1G174500_v2.0.a1 Prupe.1G468600_v2.0.a1 Prupe.1G469000_v2.0.a1 Prupe.1G469100_v2.0.a1 Prupe.1G469200_v2.0.a1 Prupe.1G469300_v2.0.a1 Prupe.4G027900_v2.0.a1 Prupe.4G028000_v2.0.a1 Prupe.4G028100_v2.0.a1 Prupe.4G028100_v2.0.a1 Prupe.4G028200_v2.0.a1 Prupe.4G028600_v2.0.a1 Prupe.4G028700_v2.0.a1 Prupe.4G028700_v2.0.a1 Prupe.4G028700_v2.0.a1 Prupe.4G028700_v2.0.a1 Prupe.4G028800_v2.0.a1 Prupe.4G100700_v2.0.a1 Prupe.6G183400_v2.0.a1 Prupe.6G183500_v2.0.a1 Prupe.6G183600_v2.0.a1 Prupe.6G184100_v2.0.a1 Prupe.6G184400_v2.0.a1 Prupe.6G184500_v2.0.a1
pyrus_communis	pycom01g05620 pycom01g05630 pycom05g30820 pycom05g30840 pycom05g30860 pycom05g30880 pycom05g30890 pycom05g30900 pycom08g11780 pycom08g11850 pycom10g26340 pycom10g26350 pycom10g26360 pycom10g26400 pycom10g26410 pycom15g10580
rosa_chinensis	RchiOBHm_Chr1g0313011 RchiOBHm_Chr1g0319461 RchiOBHm_Chr1g0319511 RchiOBHm_Chr2g0114611 RchiOBHm_Chr2g0114631 RchiOBHm_Chr2g0114691 RchiOBHm_Chr2g0114741 RchiOBHm_Chr2g0114751 RchiOBHm_Chr2g0114781 RchiOBHm_Chr2g0114791 RchiOBHm_Chr3g0494511 RchiOBHm_Chr3g0494521 RchiOBHm_Chr4g0413731 RchiOBHm_Chr5g0004271 RchiOBHm_Chr5g0004291 RchiOBHm_Chr5g0004301 RchiOBHm_Chr5g0004341 RchiOBHm_Chr5g0004351 RchiOBHm_Chr5g0004371 RchiOBHm_Chr5g0033301 RchiOBHm_Chr5g0033311 RchiOBHm_Chr5g0033341 RchiOBHm_Chr5g0033361 RchiOBHm_Chr5g0033391 RchiOBHm_Chr5g0033401 RchiOBHm_Chr5g0033431 RchiOBHm_Chr5g0033451 RchiOBHm_Chr5g0033461 RchiOBHm_Chr5g0033531 RchiOBHm_Chr5g0033541 RchiOBHm_Chr5g0033711 RchiOBHm_Chr5g0033851 RchiOBHm_Chr5g0033861 RchiOBHm_Chr5g0033871 RchiOBHm_Chr5g0054051 RchiOBHm_Chr5g0069631 RchiOBHm_Chr6g0265231 RchiOBHm_Chr6g0298941 RchiOBHm_Chr6g0298951 RchiOBHm_Chr6g0299001 RchiOBHm_Chr6g0299011 RchiOBHm_Chr6g0299021
rosa_laevigata	RLG00000008198 RLG00000010335 RLG00000011468 RLG00000011471 RLG00000014070 RLG00000014071 RLG00000018116 RLG00000018125 RLG00000031219 RLG00000031220 RLG00000031221 RLG00000031222 RLG00000031224 RLG00000033469 RLG00000033471 RLG00000033473 RLG00000033476 RLG00000033477 RLG00000033479 RLG00000033480 RLG00000033483 RLG00000035638
rosa_multiflora	Rmu_co8063382.1_g000001 Rmu_co8095246.1_g000001 Rmu_sc0000370.1_g000009 Rmu_sc0000370.1_g000019 Rmu_sc0000371.1_g000023 Rmu_sc0000371.1_g000036 Rmu_sc0000433.1_g000023 Rmu_sc0000433.1_g000024 Rmu_sc0000545.1_g000004 Rmu_sc0000981.1_g000001 Rmu_sc0001150.1_g000032 Rmu_sc0001242.1_g000004 Rmu_sc0001242.1_g000008 Rmu_sc0001522.1_g000035 Rmu_sc0002206.1_g000008 Rmu_sc0002206.1_g000021 Rmu_sc0002453.1_g000008 Rmu_sc0002453.1_g000018 Rmu_sc0003286.1_g000007 Rmu_sc0003286.1_g000013 Rmu_sc0004133.1_g000005 Rmu_sc0005660.1_g000005 Rmu_sc0005660.1_g000019 Rmu_sc0005660.1_g000025 Rmu_sc0005870.1_g000017 Rmu_sc0005870.1_g000022 Rmu_sc0006083.1_g000003 Rmu_sc0008092.1_g000016 Rmu_sc0008210.1_g000007 Rmu_sc0009715.1_g000001 Rmu_sc0011893.1_g000003 Rmu_sc0011893.1_g000004 Rmu_sc0015325.1_g000002 Rmu_sc0029922.1_g000001 Rmu_ssc0000359.1_g000017 Rmu_ssc0000424.1_g000009
rosa_roxburghii	Rroxscaffold_175G00432170 Rroxscaffold_1G00022110 Rroxscaffold_1G00046520 Rroxscaffold_1G00046550 Rroxscaffold_1G00046600 Rroxscaffold_1G00046650 Rroxscaffold_1G00046680 Rroxscaffold_1G00071130 Rroxscaffold_1G00071380 Rroxscaffold_1G00071410 Rroxscaffold_2G00130310 Rroxscaffold_2G00130320 Rroxscaffold_2G00130330 Rroxscaffold_4G00328340 Rroxscaffold_4G00328360 Rroxscaffold_4G00328370 Rroxscaffold_5G00357650 Rroxscaffold_7G00156890 Rroxscaffold_7G00169080 Rroxscaffold_7G00169090 Rroxscaffold_7G00169100 Rroxscaffold_7G00169170 Rroxscaffold_7G00169190
rosa_rugosa	Rorug01G0027900 Rorug01G0130600 Rorug02G0190700 Rorug04G0411000 Rorug04G0411000 Rorug04G0411200 Rorug04G0411300 Rorug04G0411400 Rorug04G0411500 Rorug05G0139300 Rorug05G0139500 Rorug05G0139800 Rorug05G0139900 Rorug05G0187000 Rorug05G0187000 Rorug05G0187000 Rorug05G0398900 Rorug06G0034600 Rorug06G0283900 Rorug06G0284000 Rorug06G0284100 Rorug06G0394700
rosa_samantha	Rh1BG036800 Rh1CG040700 Rh1CG040800 Rh1DG000200 Rh1DG028900 Rh1DG090600 Rh2AG248900 Rh2CG252600 Rh2CG253100 Rh2CG253500 Rh2CG253600 Rh2CG253900 Rh4DG177700 Rh5CG041500 Rh5CG041700 Rh5CG042100 Rh5CG260400 Rh5CG260500 Rh5CG260600 Rh5CG260900 Rh5CG261100 Rh5DG037300 Rh5DG037400 Rh5DG037500 Rh5DG236800 Rh5DG236900 Rh5DG237100 Rh5DG237500 Rh5DG237600 Rh5DG237700 Rh5DG241100 Rh6CG134500 Rh6CG409700 Rh6CG409800 Rh6CG410100 Rh6DG120900 Rh6DG396500 Rh6DG396600 Rh6DG396700 Rh6DG514400
rosa_wichuraiana	Rw1G003200 Rw1G003210 Rw1G003230 Rw2G019350 Rw4G015240 Rw5G003500 Rw5G003520 Rw5G003530 Rw5G003690 Rw5G003720 Rw5G003730 Rw5G021090 Rw5G021100 Rw5G021110 Rw5G021120 Rw5G021130 Rw6G011870 Rw6G034630 Rw7G038700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	165, 178, 353, 366
AcsI	RAATTY	1 cut(s)	26
AfaI	GTAC	2 cut(s)	318, 323
AluBI	AGCT	2 cut(s)	23, 234
AluI	AGCT	2 cut(s)	23, 234
Alw26I	GTCTC	4 cut(s)	201, 242, 263, 375
AlwI	GGATC	4 cut(s)	165, 178, 353, 366
ApoI	RAATTY	1 cut(s)	26
ArsI	GACNNNNNNTTYG	2 cut(s)	323, 355
AseI	ATTAAT	1 cut(s)	63
Asp700I	GAANNNNTTC	1 cut(s)	271
BamHI	GGATCC	2 cut(s)	170, 358
BcoDI	GTCTC	4 cut(s)	201, 242, 263, 375
BmiI	GGNNCC	2 cut(s)	172, 360
BmsI	GCATC	1 cut(s)	81
BplI	GAGNNNNNCTC	2 cut(s)	195, 227
BpmI	CTGGAG	1 cut(s)	55
BpuEI	CTTGAG	1 cut(s)	312
BsaI	GGTCTC	2 cut(s)	201, 375
BsaJI	CCNNGG	1 cut(s)	211
Bse3DI	GCAATG	1 cut(s)	189
BseDI	CCNNGG	1 cut(s)	211
BseMI	GCAATG	1 cut(s)	189
BseMII	CTCAG	1 cut(s)	266
BseRI	GAGGAG	3 cut(s)	89, 94, 219
BsgI	GTGCAG	1 cut(s)	220
BsmAI	GTCTC	4 cut(s)	201, 242, 263, 375
Bso31I	GGTCTC	2 cut(s)	201, 375
Bsp143I	GATC	2 cut(s)	170, 358
BspCNI	CTCAG	1 cut(s)	265
BspLI	GGNNCC	2 cut(s)	172, 360
BspPI	GGATC	4 cut(s)	165, 178, 353, 366
BspTNI	GGTCTC	2 cut(s)	201, 375
BsrDI	GCAATG	1 cut(s)	189
BssECI	CCNNGG	1 cut(s)	211
BssMI	GATC	2 cut(s)	170, 358
Bst4CI	ACNGT	2 cut(s)	272, 321
Bst6I	CTCTTC	1 cut(s)	160
BstDEI	CTNAG	1 cut(s)	252
BstKTI	GATC	2 cut(s)	173, 361
BstMAI	GTCTC	4 cut(s)	201, 242, 263, 375
BstMBI	GATC	2 cut(s)	170, 358
BstX2I	RGATCY	2 cut(s)	170, 358
BstYI	RGATCY	2 cut(s)	170, 358
Csp6I	GTAC	2 cut(s)	317, 322
CviAII	CATG	2 cut(s)	262, 313
CviJI	RGCY	7 cut(s)	23, 96, 134, 144, 234, 307, 381
CviKI_1	RGCY	7 cut(s)	23, 96, 134, 144, 234, 307, 381
CviQI	GTAC	2 cut(s)	317, 322
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	2 cut(s)	172, 360
DpnII	GATC	2 cut(s)	170, 358
Eam1104I	CTCTTC	1 cut(s)	160
EarI	CTCTTC	1 cut(s)	160
Eco31I	GGTCTC	2 cut(s)	201, 375
FaeI	CATG	2 cut(s)	265, 316
FaiI	YATR	7 cut(s)	10, 141, 263, 277, 279, 298, 314
FatI	CATG	2 cut(s)	261, 312
GsuI	CTGGAG	1 cut(s)	55
Hin1II	CATG	2 cut(s)	265, 316
HinfI	GANTC	2 cut(s)	216, 256
Hpy188I	TCNGA	4 cut(s)	19, 164, 215, 255
Hpy188III	TCNNGA	1 cut(s)	329
HpyCH4III	ACNGT	2 cut(s)	272, 321
HpyCH4V	TGCA	4 cut(s)	12, 194, 201, 312
HpyF3I	CTNAG	1 cut(s)	252
Hsp92II	CATG	2 cut(s)	265, 316
Kzo9I	GATC	2 cut(s)	170, 358
LpnPI	CCDG	3 cut(s)	19, 363, 375
LweI	GCATC	1 cut(s)	81
MalI	GATC	2 cut(s)	172, 360
MboI	GATC	2 cut(s)	170, 358
MboII	GAAGA	3 cut(s)	67, 147, 233
MflI	RGATCY	2 cut(s)	170, 358
MluCI	AATT	2 cut(s)	26, 55
MlyI	GAGTC	2 cut(s)	210, 265
MmeI	TCCRAC	3 cut(s)	103, 138, 198
MnlI	CCTC	8 cut(s)	98, 107, 110, 115, 197, 221, 343, 349
MroXI	GAANNNNTTC	1 cut(s)	271
MseI	TTAA	3 cut(s)	63, 183, 335
NdeII	GATC	2 cut(s)	170, 358
NlaIII	CATG	2 cut(s)	265, 316
NlaIV	GGNNCC	2 cut(s)	172, 360
PdmI	GAANNNNTTC	1 cut(s)	271
PleI	GAGTC	2 cut(s)	210, 264
PpsI	GAGTC	2 cut(s)	210, 264
PshBI	ATTAAT	1 cut(s)	63
PspN4I	GGNNCC	2 cut(s)	172, 360
PsuI	RGATCY	2 cut(s)	170, 358
RsaI	GTAC	2 cut(s)	318, 323
RsaNI	GTAC	2 cut(s)	317, 322
SaqAI	TTAA	3 cut(s)	63, 183, 335
Sau3AI	GATC	2 cut(s)	170, 358
SchI	GAGTC	2 cut(s)	210, 265
SetI	ASST	4 cut(s)	25, 90, 213, 236
SfaNI	GCATC	1 cut(s)	81
SmlI	CTYRAG	1 cut(s)	327
SmoI	CTYRAG	1 cut(s)	327
Sse9I	AATT	2 cut(s)	26, 55
SspI	AATATT	1 cut(s)	339
TaaI	ACNGT	2 cut(s)	272, 321
TaqI	TCGA	1 cut(s)	219
TasI	AATT	2 cut(s)	26, 55
Tru1I	TTAA	3 cut(s)	63, 183, 335
Tru9I	TTAA	3 cut(s)	63, 183, 335
TspDTI	ATGAA	1 cut(s)	264
TspGWI	ACGGA	1 cut(s)	299
VspI	ATTAAT	1 cut(s)	63
XapI	RAATTY	1 cut(s)	26
XcmI	CCANNNNNNNNNTGG	1 cut(s)	137
XmnI	GAANNNNTTC	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.