Rh1DG000200

Clp protease-related protein At4g12060

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000086
Physical Location & Seq
Reverse (-)
69294 .. 118885
49592 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG000200.1

Sequence Viewer

Length: 1738 bp
ATGGCCAGACCTAAGCTTGCCTCAAATTGGAAGCTCTATCTCCTACTCTACGACGAAGGTTACTCCGACGGGACCTTGTCATGGTTGAAATGGCCACAGACTGTCGCCACCGTTCTCTTCAGCCTCCCAACAGGGAAACCAGAGAGGATTTCTTCTGGGAAAAGCTCACAATGGTCGGCTAGAGCGATTAAGTCGTTTGCTATGGGTGAATTGGAAGCAAGGAAGCTCAAGTATCCCAATACTGGCACGGAAGCCCTTCTGATGGGAATTTTAGTCGAGGGAACAAGTATAGCTGCGAAGTTTCTCAGAGCTAATGGAATCACGCTTTTCAAGGTTCGAGAAGAAACTGTAAAGTTACTTGGAAAGTCAGACATGTACTTTTTCAGCCCCGAGCATCCTCCATTGACTGAGCCAGCTCAGAGGGCCCTTGACTGGGCTGTAGATCAAAAACTGAAGTCAGGAGACGGTGGGGAAATAACAGTAACTCATCTGCTTCTCGGGATTTGGTCTGAAAAAGAGTCAGCAGGCTGCAGATTCTCAGGTTGTATCCGACTATGTGAGGCATTTTCTTCATCAGCACACTTGTGCATAAAAATAGAAGGGCAAAGGAGGCATGGTGAAAAAGAAAAGGAGAGGAGAGAGGGAAAAGAAAGACGGGACGACAAGGATTTTATCCATGATGGCAGTAGGGACTTCAACATGCAGCGTTTTCCACACAAACGGAAATCCACTCGTAGGAGTGAAGACTTAGCTGCTGACCAATTGCATCAAGGTGGGGAAGACGATGAAAGCCTGGGAGAACATCTCATTTCATCTTCTCATGACGATAAAAAAATTCTGCAAAAAATTTGCCGCCATGTGTCACCGAGCAAAGGAGTAATGGTTTCCACTAGTTTTGTATCACTCCTTTCTATACAGGCACTTCATGTGTTACTGATCATCATCATGATCACTGCCCAAGCACTTGATCTGCCTCCCAATGGTAAGAGCAACTTCTGTTACAACGACAGAGGCAACTGCACTACCAATGGTAGTGTCTACCAGACAAACCTCAACAGCATGCTCAACTACCTCATCTCCAACAGAAACGGCACCGGGTTTTACAGTTCCTCCAGACTCTCAGGCCCAAACCCCGAAGATGAAGAAGTTTACGCCACCGGAGTTTGTAGAGGAGACGCTAAGGTGGATGCTTGCGGCAAATGCCTTAGCGACTCTACATATCAACTCACCAAGTCTTGCCCTAACCAGAAGGAGGCACTTGGATGCTTCGACAACTGCACTTTACGCTACTCGAATCGCTCCTTGTACGGCGTCATGGAATCCAAGCCTGCTTTGATCTCCTATAACCTACAAAACGTGTCATCGTCGTTAGATGCAGTTGAGGACTTCAATCAACGGTTCACTACGCTGTTGGACGGTTTGACGACTGAAGCCGCGGCTCGGGGTGATGAGCTCAAGTTTGCATTTGGAAATGTAAATGCTTCAAAGATTAATAAAACGATATATGCAATGGCGCAGTGCACACCGGATTTGACGGAGAAAGACTGCAAGAGTTGCTTGGATGATGCTGTTGGACAACTGAAAATATTTTATGGGAGTATTGGAGGGAGAGTTTGTACACCCAGTTGTAACTTTAGGTTCGAGGTTTACCCTTTCCTAGAACCGCAGGAAGCCCAGGCGGTCGCGGTTCCTTTACCTCCTTTACCATCCTCCAATACCACAGTTTCATTGGGATTAG

Protein Analysis

579

Amino Acids

64.01

Weight (kDa)

7.46

Isoelectric Point (pI)

37.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Clp_N PF02861 62 - 175 2.5e-12 Clp repeat (R) N-terminal domain
Stress-antifung PF01657 333 - 433 3.1e-17 Salt stress response/antifungal
Stress-antifung PF01657 459 - 549 1.3e-11 Salt stress response/antifungal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000086)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21230 AT4G21400 AT4G21400 AT4G21400 AT4G21400 AT4G21400 AT4G21400 AT4G21400 AT4G21400 AT4G21410 AT4G21410 AT4G21410 AT4G38830
fragaria_vesca FvH4_2g29861 FvH4_2g29861 FvH4_2g29870 FvH4_2g29870 FvH4_2g29870 FvH4_2g29871 FvH4_2g29871 FvH4_2g29875 FvH4_2g29878 FvH4_3g02833 FvH4_3g02833 FvH4_3g02834 FvH4_3g02870 FvH4_3g19870 FvH4_3g19870 FvH4_3g19870 FvH4_3g19870 FvH4_3g20010
malus_domestica MD00G1101400.v1.1 MD00G1101700.v1.1 MD01G1027900.v1.1 MD02G1101400.v1.1 MD05G1336800.v1.1 MD05G1337000.v1.1 MD05G1337300.v1.1 MD05G1337400.v1.1 MD05G1337500.v1.1 MD07G1014000.v1.1 MD08G1139800.v1.1 MD08G1139900.v1.1 MD08G1140000.v1.1 MD08G1140100.v1.1 MD08G1140200.v1.1 MD08G1140400.v1.1 MD10G1312200.v1.1 MD10G1312500.v1.1 MD15G1117400.v1.1
prunus_persica Prupe.1G174500_v2.0.a1 Prupe.1G468600_v2.0.a1 Prupe.1G469000_v2.0.a1 Prupe.1G469100_v2.0.a1 Prupe.1G469200_v2.0.a1 Prupe.1G469300_v2.0.a1 Prupe.4G027900_v2.0.a1 Prupe.4G028000_v2.0.a1 Prupe.4G028100_v2.0.a1 Prupe.4G028100_v2.0.a1 Prupe.4G028200_v2.0.a1 Prupe.4G028600_v2.0.a1 Prupe.4G028700_v2.0.a1 Prupe.4G028700_v2.0.a1 Prupe.4G028700_v2.0.a1 Prupe.4G028700_v2.0.a1 Prupe.4G028800_v2.0.a1 Prupe.4G100700_v2.0.a1 Prupe.6G183400_v2.0.a1 Prupe.6G183500_v2.0.a1 Prupe.6G183600_v2.0.a1 Prupe.6G184100_v2.0.a1 Prupe.6G184400_v2.0.a1 Prupe.6G184500_v2.0.a1
pyrus_communis pycom01g05620 pycom01g05630 pycom05g30820 pycom05g30840 pycom05g30860 pycom05g30880 pycom05g30890 pycom05g30900 pycom08g11780 pycom08g11850 pycom10g26340 pycom10g26350 pycom10g26360 pycom10g26400 pycom10g26410 pycom15g10580
rosa_chinensis RchiOBHm_Chr1g0313011 RchiOBHm_Chr1g0319461 RchiOBHm_Chr1g0319511 RchiOBHm_Chr2g0114611 RchiOBHm_Chr2g0114631 RchiOBHm_Chr2g0114691 RchiOBHm_Chr2g0114741 RchiOBHm_Chr2g0114751 RchiOBHm_Chr2g0114781 RchiOBHm_Chr2g0114791 RchiOBHm_Chr3g0494511 RchiOBHm_Chr3g0494521 RchiOBHm_Chr4g0413731 RchiOBHm_Chr5g0004271 RchiOBHm_Chr5g0004291 RchiOBHm_Chr5g0004301 RchiOBHm_Chr5g0004341 RchiOBHm_Chr5g0004351 RchiOBHm_Chr5g0004371 RchiOBHm_Chr5g0033301 RchiOBHm_Chr5g0033311 RchiOBHm_Chr5g0033341 RchiOBHm_Chr5g0033361 RchiOBHm_Chr5g0033391 RchiOBHm_Chr5g0033401 RchiOBHm_Chr5g0033431 RchiOBHm_Chr5g0033451 RchiOBHm_Chr5g0033461 RchiOBHm_Chr5g0033531 RchiOBHm_Chr5g0033541 RchiOBHm_Chr5g0033711 RchiOBHm_Chr5g0033851 RchiOBHm_Chr5g0033861 RchiOBHm_Chr5g0033871 RchiOBHm_Chr5g0054051 RchiOBHm_Chr5g0069631 RchiOBHm_Chr6g0265231 RchiOBHm_Chr6g0298941 RchiOBHm_Chr6g0298951 RchiOBHm_Chr6g0299001 RchiOBHm_Chr6g0299011 RchiOBHm_Chr6g0299021
rosa_laevigata RLG00000008198 RLG00000010335 RLG00000011468 RLG00000011471 RLG00000014070 RLG00000014071 RLG00000018116 RLG00000018125 RLG00000031219 RLG00000031220 RLG00000031221 RLG00000031222 RLG00000031224 RLG00000033469 RLG00000033471 RLG00000033473 RLG00000033476 RLG00000033477 RLG00000033479 RLG00000033480 RLG00000033483 RLG00000035638
rosa_multiflora Rmu_co8063382.1_g000001 Rmu_co8095246.1_g000001 Rmu_sc0000370.1_g000009 Rmu_sc0000370.1_g000019 Rmu_sc0000371.1_g000023 Rmu_sc0000371.1_g000036 Rmu_sc0000433.1_g000023 Rmu_sc0000433.1_g000024 Rmu_sc0000545.1_g000004 Rmu_sc0000981.1_g000001 Rmu_sc0001150.1_g000032 Rmu_sc0001242.1_g000004 Rmu_sc0001242.1_g000008 Rmu_sc0001522.1_g000035 Rmu_sc0002206.1_g000008 Rmu_sc0002206.1_g000021 Rmu_sc0002453.1_g000008 Rmu_sc0002453.1_g000018 Rmu_sc0003286.1_g000007 Rmu_sc0003286.1_g000013 Rmu_sc0004133.1_g000005 Rmu_sc0005660.1_g000005 Rmu_sc0005660.1_g000019 Rmu_sc0005660.1_g000025 Rmu_sc0005870.1_g000017 Rmu_sc0005870.1_g000022 Rmu_sc0006083.1_g000003 Rmu_sc0008092.1_g000016 Rmu_sc0008210.1_g000007 Rmu_sc0009715.1_g000001 Rmu_sc0011893.1_g000003 Rmu_sc0011893.1_g000004 Rmu_sc0015325.1_g000002 Rmu_sc0029922.1_g000001 Rmu_ssc0000359.1_g000017 Rmu_ssc0000424.1_g000009
rosa_roxburghii Rroxscaffold_175G00432170 Rroxscaffold_1G00022110 Rroxscaffold_1G00046520 Rroxscaffold_1G00046550 Rroxscaffold_1G00046600 Rroxscaffold_1G00046650 Rroxscaffold_1G00046680 Rroxscaffold_1G00071130 Rroxscaffold_1G00071380 Rroxscaffold_1G00071410 Rroxscaffold_2G00130310 Rroxscaffold_2G00130320 Rroxscaffold_2G00130330 Rroxscaffold_4G00328340 Rroxscaffold_4G00328360 Rroxscaffold_4G00328370 Rroxscaffold_5G00357650 Rroxscaffold_7G00156890 Rroxscaffold_7G00169080 Rroxscaffold_7G00169090 Rroxscaffold_7G00169100 Rroxscaffold_7G00169170 Rroxscaffold_7G00169190
rosa_rugosa Rorug01G0027900 Rorug01G0130600 Rorug02G0190700 Rorug04G0411000 Rorug04G0411000 Rorug04G0411200 Rorug04G0411300 Rorug04G0411400 Rorug04G0411500 Rorug05G0139300 Rorug05G0139500 Rorug05G0139800 Rorug05G0139900 Rorug05G0187000 Rorug05G0187000 Rorug05G0187000 Rorug05G0398900 Rorug06G0034600 Rorug06G0283900 Rorug06G0284000 Rorug06G0284100 Rorug06G0394700
rosa_samantha Rh1BG036800 Rh1CG040700 Rh1CG040800 Rh1DG000200 Rh1DG028900 Rh1DG090600 Rh2AG248900 Rh2CG252600 Rh2CG253100 Rh2CG253500 Rh2CG253600 Rh2CG253900 Rh4DG177700 Rh5CG041500 Rh5CG041700 Rh5CG042100 Rh5CG260400 Rh5CG260500 Rh5CG260600 Rh5CG260900 Rh5CG261100 Rh5DG037300 Rh5DG037400 Rh5DG037500 Rh5DG236800 Rh5DG236900 Rh5DG237100 Rh5DG237500 Rh5DG237600 Rh5DG237700 Rh5DG241100 Rh6CG134500 Rh6CG409700 Rh6CG409800 Rh6CG410100 Rh6DG120900 Rh6DG396500 Rh6DG396600 Rh6DG396700 Rh6DG514400
rosa_wichuraiana Rw1G003200 Rw1G003210 Rw1G003230 Rw2G019350 Rw4G015240 Rw5G003500 Rw5G003520 Rw5G003530 Rw5G003690 Rw5G003720 Rw5G003730 Rw5G021090 Rw5G021100 Rw5G021110 Rw5G021120 Rw5G021130 Rw6G011870 Rw6G034630 Rw7G038700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1091
AccI GTMKAC 1 cut(s) 1038
AccII CGCG 2 cut(s) 1436, 1685
AciI CCGC 7 cut(s) 853, 1194, 1434, 1436, 1664, 1679, 1685
AcoI YGGCCR 2 cut(s) 3, 92
AcsI RAATTY 3 cut(s) 267, 834, 846
AcuI CTGAAG 3 cut(s) 103, 473, 1449
AcyI GRCGYC 1 cut(s) 1311
AfaI GTAC 3 cut(s) 377, 1307, 1618
AflIII ACRYGT 2 cut(s) 372, 1356
AgsI TTSAA 5 cut(s) 88, 331, 697, 1390, 1485
AhlI ACTAGT 1 cut(s) 890
AjnI CCWGG 2 cut(s) 792, 1674
AleI CACNNNNGTG 1 cut(s) 583
AluBI AGCT 9 cut(s) 16, 34, 165, 226, 293, 311, 416, 752, 1453
AluI AGCT 9 cut(s) 16, 34, 165, 226, 293, 311, 416, 752, 1453
Alw21I GWGCWC 2 cut(s) 1455, 1523
Alw26I GTCTC 2 cut(s) 456, 1167
Alw44I GTGCAC 1 cut(s) 1519
Ama87I CYCGRG 3 cut(s) 389, 497, 1440
AoxI GGCC 4 cut(s) 3, 92, 423, 1123
ApaI GGGCCC 1 cut(s) 427
ApaLI GTGCAC 1 cut(s) 1519
ApeKI GCWGC 4 cut(s) 293, 528, 703, 752
ApoI RAATTY 3 cut(s) 267, 834, 846
AseI ATTAAT 1 cut(s) 1491
Asp700I GAANNNNTTC 1 cut(s) 255
AspLEI GCGC 1 cut(s) 1516
AspS9I GGNCC 4 cut(s) 72, 423, 424, 1124
AsuC2I CCSGG 1 cut(s) 1096
AsuHPI GGTGA 5 cut(s) 218, 629, 855, 1219, 1457
AvaI CYCGRG 3 cut(s) 389, 497, 1440
AvaII GGWCC 1 cut(s) 72
BaeGI GKGCMC 2 cut(s) 427, 1523
BalI TGGCCA 2 cut(s) 5, 94
BanI GGYRCC 1 cut(s) 1091
BanII GRGCYC 2 cut(s) 427, 1455
BbsI GAAGAC 2 cut(s) 750, 786
Bbv12I GWGCWC 2 cut(s) 1455, 1523
BbvI GCAGC 4 cut(s) 280, 515, 715, 739
BccI CCATC 3 cut(s) 256, 674, 1714
BceAI ACGGC 2 cut(s) 1105, 1324
BciT130I CCWGG 2 cut(s) 794, 1676
BciVI GTATCC 2 cut(s) 243, 557
BclI TGATCA 2 cut(s) 936, 948
BcnI CCSGG 1 cut(s) 1096
BcoDI GTCTC 2 cut(s) 456, 1167
BcuI ACTAGT 1 cut(s) 890
BfaI CTAG 3 cut(s) 180, 891, 1658
BfmI CTRYAG 2 cut(s) 438, 529
BfuI GTATCC 2 cut(s) 243, 557
BisI GCNGC 8 cut(s) 294, 529, 704, 753, 853, 1195, 1434, 1437
BlsI GCNGC 8 cut(s) 295, 530, 705, 754, 854, 1196, 1435, 1438
Bme1390I CCNGG 3 cut(s) 794, 1096, 1676
Bme18I GGWCC 1 cut(s) 72
BmeT110I CYCGRG 3 cut(s) 389, 497, 1440
BmgT120I GGNCC 4 cut(s) 72, 423, 424, 1124
BmiI GGNNCC 4 cut(s) 73, 425, 1093, 1689
BmrFI CCNGG 3 cut(s) 794, 1096, 1676
BmrI ACTGGG 2 cut(s) 442, 1617
BmsI GCATC 6 cut(s) 403, 775, 1177, 1253, 1363, 1555
BmuI ACTGGG 2 cut(s) 442, 1617
BpiI GAAGAC 2 cut(s) 750, 786
BplI GAGNNNNNCTC 2 cut(s) 789, 821
BpmI CTGGAG 1 cut(s) 1096
Bpu10I CCTNAGC 3 cut(s) 12, 1179, 1205
BpuEI CTTGAG 2 cut(s) 212, 1439
BpuMI CCSGG 1 cut(s) 1096
BsaBI GATNNNNATC 1 cut(s) 941
BsaHI GRCGYC 1 cut(s) 1311
BsaJI CCNNGG 3 cut(s) 793, 1434, 1674
BsaWI WCCGGW 2 cut(s) 1157, 1525
Bse1I ACTGG 3 cut(s) 247, 437, 1623
Bse3DI GCAATG 1 cut(s) 1515
Bse8I GATNNNNATC 1 cut(s) 941
BseBI CCWGG 2 cut(s) 794, 1676
BseDI CCNNGG 3 cut(s) 793, 1434, 1674
BseGI GGATG 5 cut(s) 394, 1192, 1268, 1567, 1706
BseJI GATNNNNATC 1 cut(s) 941
BseMI GCAATG 1 cut(s) 1515
BseMII CTCAG 5 cut(s) 319, 399, 431, 552, 1134
BseNI ACTGG 3 cut(s) 247, 437, 1623
BseRI GAGGAG 2 cut(s) 649, 1185
BseSI GKGCMC 2 cut(s) 427, 1523
BseXI GCAGC 4 cut(s) 280, 515, 715, 739
BsgI GTGCAG 2 cut(s) 1003, 1261
Bsh1236I CGCG 2 cut(s) 1436, 1685
Bsh1285I CGRYCG 1 cut(s) 1683
BshFI GGCC 4 cut(s) 5, 94, 425, 1125
BshNI GGYRCC 1 cut(s) 1091
BsiEI CGRYCG 1 cut(s) 1683
BsiHKAI GWGCWC 2 cut(s) 1455, 1523
BsiHKCI CYCGRG 3 cut(s) 389, 497, 1440
BsiSI CCGG 3 cut(s) 1095, 1158, 1526
BslFI GGGAC 3 cut(s) 85, 671, 704
BsmAI GTCTC 2 cut(s) 456, 1167
BsmBI CGTCTC 2 cut(s) 456, 1167
BsmFI GGGAC 3 cut(s) 85, 671, 704
BsnI GGCC 4 cut(s) 5, 94, 425, 1125
BsoBI CYCGRG 3 cut(s) 389, 497, 1440
Bsp120I GGGCCC 1 cut(s) 423
Bsp1286I GDGCHC 3 cut(s) 427, 1455, 1523
Bsp1407I TGTACA 1 cut(s) 1616
Bsp143I GATC 5 cut(s) 442, 936, 948, 967, 1335
BspACI CCGC 7 cut(s) 853, 1194, 1434, 1436, 1664, 1679, 1685
BspANI GGCC 4 cut(s) 5, 94, 425, 1125
BspCNI CTCAG 5 cut(s) 318, 400, 430, 551, 1133
BspFNI CGCG 2 cut(s) 1436, 1685
BspHI TCATGA 2 cut(s) 820, 945
BspLI GGNNCC 4 cut(s) 73, 425, 1093, 1689
BspMAI CTGCAG 1 cut(s) 533
BspT107I GGYRCC 1 cut(s) 1091
BsrDI GCAATG 1 cut(s) 1515
BsrGI TGTACA 1 cut(s) 1616
BsrI ACTGG 3 cut(s) 247, 437, 1623
BssECI CCNNGG 3 cut(s) 793, 1434, 1674
BssMI GATC 5 cut(s) 442, 936, 948, 967, 1335
BssNI GRCGYC 1 cut(s) 1311
Bst2UI CCWGG 2 cut(s) 794, 1676
Bst4CI ACNGT 9 cut(s) 103, 112, 349, 467, 481, 1106, 1398, 1418, 1723
Bst6I CTCTTC 1 cut(s) 122
BstACI GRCGYC 1 cut(s) 1311
BstAPI GCANNNNNTGC 1 cut(s) 1554
BstAUI TGTACA 1 cut(s) 1616
BstC8I GCNNGC 6 cut(s) 18, 414, 526, 1061, 1192, 1329
BstDEI CTNAG 9 cut(s) 12, 305, 408, 417, 538, 748, 1120, 1179, 1205
BstDSI CCRYGG 1 cut(s) 1434
BstF5I GGATG 5 cut(s) 394, 1192, 1268, 1567, 1706
BstFNI CGCG 2 cut(s) 1436, 1685
BstHHI GCGC 1 cut(s) 1516
BstKTI GATC 5 cut(s) 445, 939, 951, 970, 1338
BstMAI GTCTC 2 cut(s) 456, 1167
BstMBI GATC 5 cut(s) 442, 936, 948, 967, 1335
BstMCI CGRYCG 1 cut(s) 1683
BstMWI GCNNNNNNNGC 5 cut(s) 422, 610, 1200, 1284, 1554
BstNI CCWGG 2 cut(s) 794, 1676
BstNSI RCATGY 3 cut(s) 376, 703, 1063
BstSCI CCNGG 3 cut(s) 792, 1094, 1674
BstSFI CTRYAG 2 cut(s) 438, 529
BstSLI GKGCMC 2 cut(s) 427, 1523
BstUI CGCG 2 cut(s) 1436, 1685
BstV1I GCAGC 4 cut(s) 280, 515, 715, 739
BstV2I GAAGAC 2 cut(s) 750, 786
BsuI GTATCC 2 cut(s) 243, 557
BsuRI GGCC 4 cut(s) 5, 94, 425, 1125
BtgI CCRYGG 1 cut(s) 1434
BtsCI GGATG 5 cut(s) 394, 1192, 1268, 1567, 1706
BtsI GCAGTG 2 cut(s) 951, 1523
BtsIMutI CAGTG 2 cut(s) 951, 1523
Cac8I GCNNGC 6 cut(s) 18, 414, 526, 1061, 1192, 1329
CciI TCATGA 2 cut(s) 820, 945
CfoI GCGC 1 cut(s) 1516
Cfr13I GGNCC 4 cut(s) 72, 423, 424, 1124
Cfr42I CCGCGG 1 cut(s) 1437
CseI GACGC 2 cut(s) 1184, 1300
Csp6I GTAC 3 cut(s) 376, 1306, 1617
CspCI CAANNNNNGTGG 2 cut(s) 877, 912
CviQI GTAC 3 cut(s) 376, 1306, 1617
DdeI CTNAG 9 cut(s) 12, 305, 408, 417, 538, 748, 1120, 1179, 1205
DpnI GATC 5 cut(s) 444, 938, 950, 969, 1337
DpnII GATC 5 cut(s) 442, 936, 948, 967, 1335
EaeI YGGCCR 2 cut(s) 3, 92
Eam1104I CTCTTC 1 cut(s) 122
EarI CTCTTC 1 cut(s) 122
Ecl136II GAGCTC 1 cut(s) 1453
Eco24I GRGCYC 2 cut(s) 427, 1455
Eco47I GGWCC 1 cut(s) 72
Eco53kI GAGCTC 1 cut(s) 1453
Eco57I CTGAAG 3 cut(s) 103, 473, 1449
Eco88I CYCGRG 3 cut(s) 389, 497, 1440
EcoICRI GAGCTC 1 cut(s) 1453
EcoO109I RGGNCCY 3 cut(s) 72, 423, 424
EcoRII CCWGG 2 cut(s) 792, 1674
EcoT38I GRGCYC 2 cut(s) 427, 1455
Esp3I CGTCTC 2 cut(s) 456, 1167
FalI AAGNNNNNCTT 4 cut(s) 977, 1009, 1541, 1573
FaqI GGGAC 3 cut(s) 85, 671, 704
FbaI TGATCA 2 cut(s) 936, 948
FblI GTMKAC 1 cut(s) 1038
Fnu4HI GCNGC 8 cut(s) 294, 529, 704, 753, 853, 1195, 1434, 1437
FokI GGATG 5 cut(s) 381, 1199, 1275, 1574, 1693
FriOI GRGCYC 2 cut(s) 427, 1455
Fsp4HI GCNGC 8 cut(s) 294, 529, 704, 753, 853, 1195, 1434, 1437
FspBI CTAG 3 cut(s) 180, 891, 1658
GlaI GCGC 1 cut(s) 1515
GluI GCNGC 8 cut(s) 294, 529, 704, 753, 853, 1195, 1434, 1437
GsuI CTGGAG 1 cut(s) 1096
HaeIII GGCC 4 cut(s) 5, 94, 425, 1125
HapII CCGG 3 cut(s) 1095, 1158, 1526
HgaI GACGC 2 cut(s) 1184, 1300
HhaI GCGC 1 cut(s) 1516
Hin1I GRCGYC 1 cut(s) 1311
Hin6I GCGC 1 cut(s) 1514
HinP1I GCGC 1 cut(s) 1514
HindIII AAGCTT 1 cut(s) 14
HinfI GANTC 7 cut(s) 318, 518, 534, 1116, 1211, 1294, 1319
HpaII CCGG 3 cut(s) 1095, 1158, 1526
HphI GGTGA 5 cut(s) 218, 629, 855, 1219, 1457
Hpy166II GTNNAC 6 cut(s) 1039, 1150, 1401, 1521, 1619, 1648
Hpy188I TCNGA 7 cut(s) 67, 261, 308, 370, 420, 511, 551
Hpy188III TCNNGA 6 cut(s) 338, 459, 499, 821, 946, 1113
Hpy8I GTNNAC 6 cut(s) 1039, 1150, 1401, 1521, 1619, 1648
Hpy99I CGWCG 3 cut(s) 56, 71, 1369
HpyAV CCTTC 4 cut(s) 50, 266, 593, 1243
HpyCH4III ACNGT 9 cut(s) 103, 112, 349, 467, 481, 1106, 1398, 1418, 1723
HpyCH4IV ACGT 1 cut(s) 1356
HpyF10VI GCNNNNNNNGC 5 cut(s) 422, 610, 1200, 1284, 1554
HpyF3I CTNAG 9 cut(s) 12, 305, 408, 417, 538, 748, 1120, 1179, 1205
HpySE526I ACGT 1 cut(s) 1356
Hsp92I GRCGYC 1 cut(s) 1311
HspAI GCGC 1 cut(s) 1514
Ksp22I TGATCA 2 cut(s) 936, 948
KspI CCGCGG 1 cut(s) 1437
Kzo9I GATC 5 cut(s) 442, 936, 948, 967, 1335
LmnI GCTCC 1 cut(s) 1304
Lsp1109I GCAGC 4 cut(s) 280, 515, 715, 739
LweI GCATC 6 cut(s) 403, 775, 1177, 1253, 1363, 1555
MaeI CTAG 3 cut(s) 180, 891, 1658
MaeII ACGT 1 cut(s) 1356
MaeIII GTNAC 7 cut(s) 59, 354, 481, 861, 930, 998, 1628
MalI GATC 5 cut(s) 444, 938, 950, 969, 1337
MboI GATC 5 cut(s) 442, 936, 948, 967, 1335
MboII GAAGA 9 cut(s) 109, 144, 353, 561, 755, 791, 807, 1148, 1154
MfeI CAATTG 1 cut(s) 761
MhlI GDGCHC 3 cut(s) 427, 1455, 1523
MlsI TGGCCA 2 cut(s) 5, 94
MluCI AATT 6 cut(s) 25, 209, 267, 761, 834, 846
MluNI TGGCCA 2 cut(s) 5, 94
MlyI GAGTC 3 cut(s) 527, 1110, 1205
MmeI TCCRAC 5 cut(s) 90, 574, 1104, 1392, 1552
Mox20I TGGCCA 2 cut(s) 5, 94
MroXI GAANNNNTTC 1 cut(s) 255
MscI TGGCCA 2 cut(s) 5, 94
MseI TTAA 2 cut(s) 189, 1491
MslI CAYNNNNRTG 4 cut(s) 583, 771, 944, 1261
Msp20I TGGCCA 2 cut(s) 5, 94
MspA1I CMGCKG 1 cut(s) 1436
MspI CCGG 3 cut(s) 1095, 1158, 1526
MspR9I CCNGG 3 cut(s) 794, 1096, 1676
MunI CAATTG 1 cut(s) 761
MvaI CCWGG 2 cut(s) 794, 1676
MvnI CGCG 2 cut(s) 1436, 1685
MwoI GCNNNNNNNGC 5 cut(s) 422, 610, 1200, 1284, 1554
NciI CCSGG 1 cut(s) 1096
NdeII GATC 5 cut(s) 442, 936, 948, 967, 1335
NlaIV GGNNCC 4 cut(s) 73, 425, 1093, 1689
NmuCI GTSAC 1 cut(s) 861
NspI RCATGY 3 cut(s) 376, 703, 1063
OliI CACNNNNGTG 1 cut(s) 583
PaeI GCATGC 1 cut(s) 1063
PagI TCATGA 2 cut(s) 820, 945
PciI ACATGT 1 cut(s) 372
PcsI WCGNNNNNNNCGW 1 cut(s) 182
PdmI GAANNNNTTC 1 cut(s) 255
PfeI GAWTC 4 cut(s) 318, 534, 1294, 1319
PflFI GACNNNGTC 1 cut(s) 76
PkrI GCNGC 8 cut(s) 295, 530, 705, 754, 854, 1196, 1435, 1438
PleI GAGTC 3 cut(s) 526, 1110, 1205
PpsI GAGTC 3 cut(s) 526, 1110, 1205
PpuMI RGGWCCY 1 cut(s) 72
PscI ACATGT 1 cut(s) 372
PshBI ATTAAT 1 cut(s) 1491
Psp124BI GAGCTC 1 cut(s) 1455
Psp5II RGGWCCY 1 cut(s) 72
Psp6I CCWGG 2 cut(s) 792, 1674
PspGI CCWGG 2 cut(s) 792, 1674
PspN4I GGNNCC 4 cut(s) 73, 425, 1093, 1689
PspOMI GGGCCC 1 cut(s) 423
PspPI GGNCC 4 cut(s) 72, 423, 424, 1124
PspPPI RGGWCCY 1 cut(s) 72
PstI CTGCAG 1 cut(s) 533
PsyI GACNNNGTC 1 cut(s) 76
RsaI GTAC 3 cut(s) 377, 1307, 1618
RsaNI GTAC 3 cut(s) 376, 1306, 1617
RseI CAYNNNNRTG 4 cut(s) 583, 771, 944, 1261
SacI GAGCTC 1 cut(s) 1455
SacII CCGCGG 1 cut(s) 1437
SaqAI TTAA 2 cut(s) 189, 1491
SatI GCNGC 8 cut(s) 294, 529, 704, 753, 853, 1195, 1434, 1437
Sau3AI GATC 5 cut(s) 442, 936, 948, 967, 1335
Sau96I GGNCC 4 cut(s) 72, 423, 424, 1124
SchI GAGTC 3 cut(s) 527, 1110, 1205
ScrFI CCNGG 3 cut(s) 794, 1096, 1676
SduI GDGCHC 3 cut(s) 427, 1455, 1523
SfaNI GCATC 6 cut(s) 403, 775, 1177, 1253, 1363, 1555
SfcI CTRYAG 2 cut(s) 438, 529
Sfr303I CCGCGG 1 cut(s) 1437
SgrBI CCGCGG 1 cut(s) 1437
SinI GGWCC 1 cut(s) 72
SmiMI CAYNNNNRTG 4 cut(s) 583, 771, 944, 1261
SmlI CTYRAG 2 cut(s) 227, 1454
SmoI CTYRAG 2 cut(s) 227, 1454
SpeI ACTAGT 1 cut(s) 890
SphI GCATGC 1 cut(s) 1063
Sse9I AATT 6 cut(s) 25, 209, 267, 761, 834, 846
SsiI CCGC 7 cut(s) 853, 1194, 1434, 1436, 1664, 1679, 1685
SspI AATATT 1 cut(s) 1587
SspMI CTAG 3 cut(s) 180, 891, 1658
SstI GAGCTC 1 cut(s) 1455
StyD4I CCNGG 3 cut(s) 792, 1094, 1674
TaaI ACNGT 9 cut(s) 103, 112, 349, 467, 481, 1106, 1398, 1418, 1723
TaiI ACGT 1 cut(s) 1359
TaqI TCGA 5 cut(s) 276, 337, 1269, 1292, 1641
TasI AATT 6 cut(s) 25, 209, 267, 761, 834, 846
TatI WGTACW 2 cut(s) 375, 1616
TauI GCSGC 4 cut(s) 855, 1197, 1436, 1439
TfiI GAWTC 4 cut(s) 318, 534, 1294, 1319
Tru1I TTAA 2 cut(s) 189, 1491
Tru9I TTAA 2 cut(s) 189, 1491
TscAI CASTG 2 cut(s) 958, 1523
TseFI GTSAC 1 cut(s) 861
TseI GCWGC 4 cut(s) 293, 528, 703, 752
Tsp45I GTSAC 1 cut(s) 861
TspDTI ATGAA 6 cut(s) 561, 801, 801, 914, 1155, 1716
TspGWI ACGGA 3 cut(s) 263, 736, 1550
TspRI CASTG 2 cut(s) 958, 1523
Tth111I GACNNNGTC 1 cut(s) 76
VneI GTGCAC 1 cut(s) 1519
VpaK11BI GGWCC 1 cut(s) 72
VspI ATTAAT 1 cut(s) 1491
XapI RAATTY 3 cut(s) 267, 834, 846
XceI RCATGY 3 cut(s) 376, 703, 1063
XcmI CCANNNNNNNNNTGG 1 cut(s) 1726
XmiI GTMKAC 1 cut(s) 1038
XmnI GAANNNNTTC 1 cut(s) 255
XspI CTAG 3 cut(s) 180, 891, 1658
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.