Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000433.1

Orthogroup ID

OG0000086

Physical Location & Seq

Genomic Coordinates Reverse (-)

88347 .. 94749

Gene Structure 6403 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000433.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2775 bp

atgaattcttcaacatcgctgcttttcatttttgccactattatcgtcgctccggtcatagttgacgctcaatgcactaccacagctgactactgctggagctgtaatactactactaatgccaccaccacctacaaacaaaacctcaacacactcctcgtctctttgtcttccaacaaccaagccaactacgggttcctcaatttgtctctgggaactggcaccgacaaagtgaatgtaattgcactctgtagaggagaccttgcccaagaccagtgtcgtagttgttacggccaagccaacatctatctctcacagaattgctctgatcatcacgaagcaatcatatgggcccagggttgcactgttcgatactcgaacatcaccatgttcggaatcgaagaagacgagcccgcttggttgttgtcgagccctaacagtgcgtcaaaccctgaagatttcaagctggtgcttaatcccttgttggaaactttgagccaaaatgcatcatcaggggattcgatgaagaaatttgcagcaggacatgcgcctgtccctgcaggaagtgaaacaaatcaaaccatttatgcaagtgctcagtgcagtcctgatctggacaagcaaaactgcagtgactgccttgaagattctattaaggaaattccctcatgttgtgaaggaaaggatggagcgagggttcttaaacccagctgtattttgaggtttgagaaagcaattttctatgagccttcagctgattcgctaataaatatttctacagccactccgtcccctgcagccactccgccccctacagccacagaaggtaataatacaagtaacataacgataaaagtgtcaccatcatccaacggtaacggctatggattttacaattcttcctatggcagcggggaaagctctaaagatcaagttcatgtaattgcgctttgcagaggcgatgttccgctggttgaatgccgtagctgcctcaatgattcaacaaaggctctcccagagctctgtcccaaccaaaaggaagctattggttggtccgacagttgtatgcttcgctattcaaaccgctccatttatggaaccttagaaactttgccttttttctctttagtgaacccatttaacgtctcagcgtcaagcctggatggcttcaaccaagagctaaggaagttgctcaaaatcctaaaaagcgaagccgcaaaagatggttcccttattaagtttgcaactggaaacgccagcgctccaggtgtcacaacaatatatgcacttgtacagtgtacgccggatttgtcccagctagagtgcaatgactgcttagacggtgcctttgtagacatcccaacctgttgtgatgggaggaaaggtgggagagtcattagacccagctgtaacttcagatatgaagacttccgtttttttgaccctaacgtggtgctgccatcgccaccactgccatcaacaatatctcagtcatcagcaatatctcctcagccaacaacaaataattccacaactcccgcaggactgaagaatgataaatcgcgatctcgaactgtcatcattattgttgtgccaatcgttatctctctggtgctaattatatccctctacgtttgcttaaaagcaaggaatgagagaaaggaaaaacttgaaatactccctgcaggtgaagacagtcaagataccaatgaaattagaactgcggattccttgcaatttgactttgacaccatcagagttgcaacaaataacttttctgaagcaaataaacttggccaaggcggatttggttctgtttacaagggtacgcttctcaatggagaagatatagcagtaaaaaggctttctataaattctgggcaaggaaatttagaatttaaaaatgaagtgttgttagtagccaagcttcagcaccggaatttagtgaggcttcttggtttttgcttggaaagaaacgaaagacttcttgtgtatgagtttgttcctaacgcaagtcttgatcacatcatatttgaccgtatcaagcgtgaacatttagattgggctatgcgctataaaatcatagtaggcattactcgagggcttctttatcttcatgaagattctcgcctcaggatcatacaccgtgatctcaaagccagtaacatcctaatagatgcaaaaatgaatcctaaaatatcagactttggcatggcaaagttgttccagcttgatcaaactcaaggcaatacgagtcgaattgttgggacttatggatacatggctccagaatatgtattacatggacacttttctgttaagtccgatgtctatagttttggtgtagtagtcttggagatggtaagtggacagaaaaataattgcttccgtcaaggagaggatgtggaacatcttttaagctatgcgtggaaaagttggagggaagggacggcttcaaatctagtagatccgacattacggaatggttcaagaactgaaataatgagatgcatccacattggcttgttatgcgtgcaagaaaatgttgctgctaggccaaccatggcatctattaccctcatgcttaatagctactccctcagtctcccaccaccctcacaaccagcatttttcatgcatagcaatgttggatccaacatgtgttcgggttgggaggataattcaggggtgacagggtcgtccgatcgatccaagagcaactctgccaaagcatcggacaatgaagcttcctttaccgaactatatcctcgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

924

Amino Acids

101.17

Weight (kDa)

5.74

Isoelectric Point (pI)

43.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21230 AT4G21400 AT4G21400 AT4G21400 AT4G21400 AT4G21400 AT4G21400 AT4G21400 AT4G21400 AT4G21410 AT4G21410 AT4G21410 AT4G38830
fragaria_vesca	FvH4_2g29861 FvH4_2g29861 FvH4_2g29870 FvH4_2g29870 FvH4_2g29870 FvH4_2g29871 FvH4_2g29871 FvH4_2g29875 FvH4_2g29878 FvH4_3g02833 FvH4_3g02833 FvH4_3g02834 FvH4_3g02870 FvH4_3g19870 FvH4_3g19870 FvH4_3g19870 FvH4_3g19870 FvH4_3g20010
malus_domestica	MD00G1101400.v1.1 MD00G1101700.v1.1 MD01G1027900.v1.1 MD02G1101400.v1.1 MD05G1336800.v1.1 MD05G1337000.v1.1 MD05G1337300.v1.1 MD05G1337400.v1.1 MD05G1337500.v1.1 MD07G1014000.v1.1 MD08G1139800.v1.1 MD08G1139900.v1.1 MD08G1140000.v1.1 MD08G1140100.v1.1 MD08G1140200.v1.1 MD08G1140400.v1.1 MD10G1312200.v1.1 MD10G1312500.v1.1 MD15G1117400.v1.1
prunus_persica	Prupe.1G174500_v2.0.a1 Prupe.1G468600_v2.0.a1 Prupe.1G469000_v2.0.a1 Prupe.1G469100_v2.0.a1 Prupe.1G469200_v2.0.a1 Prupe.1G469300_v2.0.a1 Prupe.4G027900_v2.0.a1 Prupe.4G028000_v2.0.a1 Prupe.4G028100_v2.0.a1 Prupe.4G028100_v2.0.a1 Prupe.4G028200_v2.0.a1 Prupe.4G028600_v2.0.a1 Prupe.4G028700_v2.0.a1 Prupe.4G028700_v2.0.a1 Prupe.4G028700_v2.0.a1 Prupe.4G028700_v2.0.a1 Prupe.4G028800_v2.0.a1 Prupe.4G100700_v2.0.a1 Prupe.6G183400_v2.0.a1 Prupe.6G183500_v2.0.a1 Prupe.6G183600_v2.0.a1 Prupe.6G184100_v2.0.a1 Prupe.6G184400_v2.0.a1 Prupe.6G184500_v2.0.a1
pyrus_communis	pycom01g05620 pycom01g05630 pycom05g30820 pycom05g30840 pycom05g30860 pycom05g30880 pycom05g30890 pycom05g30900 pycom08g11780 pycom08g11850 pycom10g26340 pycom10g26350 pycom10g26360 pycom10g26400 pycom10g26410 pycom15g10580
rosa_chinensis	RchiOBHm_Chr1g0313011 RchiOBHm_Chr1g0319461 RchiOBHm_Chr1g0319511 RchiOBHm_Chr2g0114611 RchiOBHm_Chr2g0114631 RchiOBHm_Chr2g0114691 RchiOBHm_Chr2g0114741 RchiOBHm_Chr2g0114751 RchiOBHm_Chr2g0114781 RchiOBHm_Chr2g0114791 RchiOBHm_Chr3g0494511 RchiOBHm_Chr3g0494521 RchiOBHm_Chr4g0413731 RchiOBHm_Chr5g0004271 RchiOBHm_Chr5g0004291 RchiOBHm_Chr5g0004301 RchiOBHm_Chr5g0004341 RchiOBHm_Chr5g0004351 RchiOBHm_Chr5g0004371 RchiOBHm_Chr5g0033301 RchiOBHm_Chr5g0033311 RchiOBHm_Chr5g0033341 RchiOBHm_Chr5g0033361 RchiOBHm_Chr5g0033391 RchiOBHm_Chr5g0033401 RchiOBHm_Chr5g0033431 RchiOBHm_Chr5g0033451 RchiOBHm_Chr5g0033461 RchiOBHm_Chr5g0033531 RchiOBHm_Chr5g0033541 RchiOBHm_Chr5g0033711 RchiOBHm_Chr5g0033851 RchiOBHm_Chr5g0033861 RchiOBHm_Chr5g0033871 RchiOBHm_Chr5g0054051 RchiOBHm_Chr5g0069631 RchiOBHm_Chr6g0265231 RchiOBHm_Chr6g0298941 RchiOBHm_Chr6g0298951 RchiOBHm_Chr6g0299001 RchiOBHm_Chr6g0299011 RchiOBHm_Chr6g0299021
rosa_laevigata	RLG00000008198 RLG00000010335 RLG00000011468 RLG00000011471 RLG00000014070 RLG00000014071 RLG00000018116 RLG00000018125 RLG00000031219 RLG00000031220 RLG00000031221 RLG00000031222 RLG00000031224 RLG00000033469 RLG00000033471 RLG00000033473 RLG00000033476 RLG00000033477 RLG00000033479 RLG00000033480 RLG00000033483 RLG00000035638
rosa_multiflora	Rmu_co8063382.1_g000001 Rmu_co8095246.1_g000001 Rmu_sc0000370.1_g000009 Rmu_sc0000370.1_g000019 Rmu_sc0000371.1_g000023 Rmu_sc0000371.1_g000036 Rmu_sc0000433.1_g000023 Rmu_sc0000433.1_g000024 Rmu_sc0000545.1_g000004 Rmu_sc0000981.1_g000001 Rmu_sc0001150.1_g000032 Rmu_sc0001242.1_g000004 Rmu_sc0001242.1_g000008 Rmu_sc0001522.1_g000035 Rmu_sc0002206.1_g000008 Rmu_sc0002206.1_g000021 Rmu_sc0002453.1_g000008 Rmu_sc0002453.1_g000018 Rmu_sc0003286.1_g000007 Rmu_sc0003286.1_g000013 Rmu_sc0004133.1_g000005 Rmu_sc0005660.1_g000005 Rmu_sc0005660.1_g000019 Rmu_sc0005660.1_g000025 Rmu_sc0005870.1_g000017 Rmu_sc0005870.1_g000022 Rmu_sc0006083.1_g000003 Rmu_sc0008092.1_g000016 Rmu_sc0008210.1_g000007 Rmu_sc0009715.1_g000001 Rmu_sc0011893.1_g000003 Rmu_sc0011893.1_g000004 Rmu_sc0015325.1_g000002 Rmu_sc0029922.1_g000001 Rmu_ssc0000359.1_g000017 Rmu_ssc0000424.1_g000009
rosa_roxburghii	Rroxscaffold_175G00432170 Rroxscaffold_1G00022110 Rroxscaffold_1G00046520 Rroxscaffold_1G00046550 Rroxscaffold_1G00046600 Rroxscaffold_1G00046650 Rroxscaffold_1G00046680 Rroxscaffold_1G00071130 Rroxscaffold_1G00071380 Rroxscaffold_1G00071410 Rroxscaffold_2G00130310 Rroxscaffold_2G00130320 Rroxscaffold_2G00130330 Rroxscaffold_4G00328340 Rroxscaffold_4G00328360 Rroxscaffold_4G00328370 Rroxscaffold_5G00357650 Rroxscaffold_7G00156890 Rroxscaffold_7G00169080 Rroxscaffold_7G00169090 Rroxscaffold_7G00169100 Rroxscaffold_7G00169170 Rroxscaffold_7G00169190
rosa_rugosa	Rorug01G0027900 Rorug01G0130600 Rorug02G0190700 Rorug04G0411000 Rorug04G0411000 Rorug04G0411200 Rorug04G0411300 Rorug04G0411400 Rorug04G0411500 Rorug05G0139300 Rorug05G0139500 Rorug05G0139800 Rorug05G0139900 Rorug05G0187000 Rorug05G0187000 Rorug05G0187000 Rorug05G0398900 Rorug06G0034600 Rorug06G0283900 Rorug06G0284000 Rorug06G0284100 Rorug06G0394700
rosa_samantha	Rh1BG036800 Rh1CG040700 Rh1CG040800 Rh1DG000200 Rh1DG028900 Rh1DG090600 Rh2AG248900 Rh2CG252600 Rh2CG253100 Rh2CG253500 Rh2CG253600 Rh2CG253900 Rh4DG177700 Rh5CG041500 Rh5CG041700 Rh5CG042100 Rh5CG260400 Rh5CG260500 Rh5CG260600 Rh5CG260900 Rh5CG261100 Rh5DG037300 Rh5DG037400 Rh5DG037500 Rh5DG236800 Rh5DG236900 Rh5DG237100 Rh5DG237500 Rh5DG237600 Rh5DG237700 Rh5DG241100 Rh6CG134500 Rh6CG409700 Rh6CG409800 Rh6CG410100 Rh6DG120900 Rh6DG396500 Rh6DG396600 Rh6DG396700 Rh6DG514400
rosa_wichuraiana	Rw1G003200 Rw1G003210 Rw1G003230 Rw2G019350 Rw4G015240 Rw5G003500 Rw5G003520 Rw5G003530 Rw5G003690 Rw5G003720 Rw5G003730 Rw5G021090 Rw5G021100 Rw5G021110 Rw5G021120 Rw5G021130 Rw6G011870 Rw6G034630 Rw7G038700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1676
AasI	GACNNNNNNGTC	1 cut(s)	2698
Acc36I	ACCTGC	1 cut(s)	1676
AccB1I	GGYRCC	2 cut(s)	221, 1343
AccBSI	CCGCTC	1 cut(s)	1086
AccI	GTMKAC	1 cut(s)	1353
AccII	CGCG	1 cut(s)	1564
AciI	CCGC	9 cut(s)	414, 806, 912, 968, 1084, 1215, 1539, 1724, 1803
AclWI	GGATC	5 cut(s)	2144, 2462, 2646, 2659, 2703
AcoI	YGGCCR	2 cut(s)	292, 1795
AcsI	RAATTY	7 cut(s)	4, 530, 660, 1873, 1888, 1895, 1939
AcuI	CTGAAG	6 cut(s)	474, 735, 1399, 1568, 1800, 1913
AfaI	GTAC	3 cut(s)	1293, 1300, 1828
AfeI	AGCGCT	1 cut(s)	1261
AfiI	CCNNNNNNNGG	2 cut(s)	192, 1450
AflIII	ACRYGT	1 cut(s)	2658
AjnI	CCWGG	3 cut(s)	354, 1158, 1264
AjuI	GAANNNNNNNTTGG	2 cut(s)	179, 211
AloI	GAACNNNNNNTCC	2 cut(s)	681, 713
Alw21I	GWGCWC	2 cut(s)	598, 1023
Alw26I	GTCTC	5 cut(s)	166, 213, 252, 1150, 2609
AlwI	GGATC	5 cut(s)	2144, 2462, 2646, 2659, 2703
AlwNI	CAGNNNCTG	1 cut(s)	636
Ama87I	CYCGRG	1 cut(s)	2097
Aor51HI	AGCGCT	1 cut(s)	1261
AoxI	GGCC	4 cut(s)	292, 351, 1795, 2555
ApaI	GGGCCC	1 cut(s)	355
ApeKI	GCWGC	7 cut(s)	19, 536, 797, 909, 987, 1456, 2549
ApoI	RAATTY	7 cut(s)	4, 530, 660, 1873, 1888, 1895, 1939
ArsI	GACNNNNNNTTYG	2 cut(s)	1331, 1363
Asp700I	GAANNNNTTC	1 cut(s)	1983
AspLEI	GCGC	4 cut(s)	550, 949, 1262, 2073
AspS9I	GGNCC	3 cut(s)	351, 352, 1053
AsuHPI	GGTGA	4 cut(s)	376, 852, 1700, 2701
AvaI	CYCGRG	1 cut(s)	2097
AvaII	GGWCC	1 cut(s)	1053
AxyI	CCTNAGG	1 cut(s)	2132
BaeGI	GKGCMC	1 cut(s)	355
BalI	TGGCCA	1 cut(s)	1797
BamHI	GGATCC	1 cut(s)	2651
BanI	GGYRCC	2 cut(s)	221, 1343
BanII	GRGCYC	4 cut(s)	355, 414, 434, 1023
BarI	GAAGNNNNNNTAC	2 cut(s)	1911, 1943
BbsI	GAAGAC	4 cut(s)	162, 411, 1431, 1698
Bbv12I	GWGCWC	2 cut(s)	598, 1023
BbvCI	CCTCAGC	1 cut(s)	1509
BbvI	GCAGC	7 cut(s)	6, 548, 809, 921, 974, 1443, 2536
BccI	CCATC	9 cut(s)	680, 871, 1157, 1217, 1367, 1468, 1483, 1760, 2353
BceAI	ACGGC	4 cut(s)	307, 895, 966, 2466
BciT130I	CCWGG	3 cut(s)	356, 1160, 1266
BciVI	GTATCC	1 cut(s)	2270
BclI	TGATCA	3 cut(s)	328, 2020, 2233
BcoDI	GTCTC	5 cut(s)	166, 213, 252, 1150, 2609
BfaI	CTAG	4 cut(s)	1319, 2462, 2553, 2773
BfmI	CTRYAG	8 cut(s)	250, 558, 628, 777, 795, 813, 1683, 2332
BfoI	RGCGCY	1 cut(s)	1263
BfuAI	ACCTGC	1 cut(s)	1676
BfuI	GTATCC	1 cut(s)	2270
BglI	GCCNNNNNGGC	1 cut(s)	1164
BisI	GCNGC	8 cut(s)	20, 537, 798, 910, 988, 1215, 1457, 2550
BlsI	GCNGC	8 cut(s)	21, 538, 799, 911, 989, 1216, 1458, 2551
Bme1390I	CCNGG	3 cut(s)	356, 1160, 1266
Bme18I	GGWCC	1 cut(s)	1053
BmeT110I	CYCGRG	1 cut(s)	2097
BmgT120I	GGNCC	3 cut(s)	351, 352, 1053
BmiI	GGNNCC	8 cut(s)	197, 223, 353, 1099, 1228, 1345, 2286, 2653
BmrFI	CCNGG	3 cut(s)	356, 1160, 1266
BmsI	GCATC	6 cut(s)	515, 2167, 2498, 2520, 2576, 2741
BoxI	GACNNNNGTC	1 cut(s)	276
BpiI	GAAGAC	4 cut(s)	162, 411, 1431, 1698
BpmI	CTGGAG	3 cut(s)	118, 1248, 2271
Bpu10I	CCTNAGC	2 cut(s)	1181, 1509
BpuEI	CTTGAG	1 cut(s)	2226
Bsa29I	ATCGAT	1 cut(s)	2707
BsaI	GGTCTC	1 cut(s)	252
BsaJI	CCNNGG	4 cut(s)	354, 355, 1798, 2562
BsaWI	WCCGGW	2 cut(s)	52, 1935
BsaXI	ACNNNNNCTCC	8 cut(s)	681, 711, 769, 799, 1369, 1399, 2388, 2418
Bsc4I	CCNNNNNNNGG	2 cut(s)	192, 1450
Bse1I	ACTGG	4 cut(s)	223, 274, 1252, 2160
Bse21I	CCTNAGG	1 cut(s)	2132
Bse3DI	GCAATG	2 cut(s)	1333, 2650
BseBI	CCWGG	3 cut(s)	356, 1160, 1266
BseCI	ATCGAT	1 cut(s)	2707
BseDI	CCNNGG	4 cut(s)	354, 355, 1798, 2562
BseGI	GGATG	7 cut(s)	691, 866, 1168, 1356, 2166, 2407, 2511
BseLI	CCNNNNNNNGG	2 cut(s)	192, 1450
BseMI	GCAATG	2 cut(s)	1333, 2650
BseMII	CTCAG	6 cut(s)	611, 1161, 1502, 1523, 2146, 2614
BseNI	ACTGG	4 cut(s)	223, 274, 1252, 2160
BseRI	GAGGAG	3 cut(s)	146, 270, 1497
BseSI	GKGCMC	1 cut(s)	355
BseXI	GCAGC	7 cut(s)	6, 548, 809, 921, 974, 1443, 2536
BseYI	CCCAGC	3 cut(s)	707, 1314, 1403
BsgI	GTGCAG	1 cut(s)	622
Bsh1236I	CGCG	1 cut(s)	1564
Bsh1285I	CGRYCG	1 cut(s)	2707
BshFI	GGCC	4 cut(s)	294, 353, 1797, 2557
BshNI	GGYRCC	2 cut(s)	221, 1343
BshVI	ATCGAT	1 cut(s)	2707
BsiEI	CGRYCG	1 cut(s)	2707
BsiHKAI	GWGCWC	2 cut(s)	598, 1023
BsiHKCI	CYCGRG	1 cut(s)	2097
BsiSI	CCGG	3 cut(s)	53, 1304, 1936
BslFI	GGGAC	6 cut(s)	539, 775, 1011, 1297, 2281, 2461
BslI	CCNNNNNNNGG	2 cut(s)	192, 1450
BsmAI	GTCTC	5 cut(s)	166, 213, 252, 1150, 2609
BsmBI	CGTCTC	2 cut(s)	166, 1150
BsmFI	GGGAC	6 cut(s)	539, 775, 1011, 1297, 2281, 2461
BsmI	GAATGC	1 cut(s)	983
BsnI	GGCC	4 cut(s)	294, 353, 1797, 2557
Bso31I	GGTCTC	1 cut(s)	252
BsoBI	CYCGRG	1 cut(s)	2097
Bsp120I	GGGCCC	1 cut(s)	351
Bsp1286I	GDGCHC	5 cut(s)	355, 414, 434, 598, 1023
Bsp1407I	TGTACA	1 cut(s)	1291
Bsp19I	CCATGG	1 cut(s)	2562
Bsp68I	TCGCGA	1 cut(s)	1564
BspACI	CCGC	9 cut(s)	414, 806, 912, 968, 1084, 1215, 1539, 1724, 1803
BspANI	GGCC	4 cut(s)	294, 353, 1797, 2557
BspCNI	CTCAG	6 cut(s)	610, 1160, 1501, 1522, 2145, 2613
BspDI	ATCGAT	1 cut(s)	2707
BspFNI	CGCG	1 cut(s)	1564
BspHI	TCATGA	1 cut(s)	2116
BspLI	GGNNCC	8 cut(s)	197, 223, 353, 1099, 1228, 1345, 2286, 2653
BspMAI	CTGCAG	4 cut(s)	562, 632, 799, 1687
BspMI	ACCTGC	1 cut(s)	1676
BspPI	GGATC	5 cut(s)	2144, 2462, 2646, 2659, 2703
BspT107I	GGYRCC	2 cut(s)	221, 1343
BspTNI	GGTCTC	1 cut(s)	252
BsrBI	CCGCTC	1 cut(s)	1086
BsrDI	GCAATG	2 cut(s)	1333, 2650
BsrGI	TGTACA	1 cut(s)	1291
BsrI	ACTGG	4 cut(s)	223, 274, 1252, 2160
BssECI	CCNNGG	4 cut(s)	354, 355, 1798, 2562
BssT1I	CCWWGG	2 cut(s)	1798, 2562
Bst2UI	CCWGG	3 cut(s)	356, 1160, 1266
BstAPI	GCANNNNNTGC	3 cut(s)	545, 636, 1332
BstAUI	TGTACA	1 cut(s)	1291
BstC8I	GCNNGC	3 cut(s)	414, 1258, 2534
BstDEI	CTNAG	9 cut(s)	597, 1102, 1147, 1181, 1336, 1488, 1509, 2132, 2600
BstDSI	CCRYGG	1 cut(s)	2562
BstF5I	GGATG	7 cut(s)	691, 866, 1168, 1356, 2166, 2407, 2511
BstFNI	CGCG	1 cut(s)	1564
BstH2I	RGCGCY	1 cut(s)	1263
BstHHI	GCGC	4 cut(s)	550, 949, 1262, 2073
BstMAI	GTCTC	5 cut(s)	166, 213, 252, 1150, 2609
BstMCI	CGRYCG	1 cut(s)	2707
BstMWI	GCNNNNNNNGC	9 cut(s)	545, 636, 918, 987, 1164, 1332, 1462, 1471, 2529
BstNI	CCWGG	3 cut(s)	356, 1160, 1266
BstNSI	RCATGY	2 cut(s)	548, 2662
BstPAI	GACNNNNGTC	1 cut(s)	276
BstSCI	CCNGG	3 cut(s)	354, 1158, 1264
BstSFI	CTRYAG	8 cut(s)	250, 558, 628, 777, 795, 813, 1683, 2332
BstSLI	GKGCMC	1 cut(s)	355
BstUI	CGCG	1 cut(s)	1564
BstV1I	GCAGC	7 cut(s)	6, 548, 809, 921, 974, 1443, 2536
BstV2I	GAAGAC	4 cut(s)	162, 411, 1431, 1698
BstX2I	RGATCY	2 cut(s)	2467, 2651
BstYI	RGATCY	2 cut(s)	2467, 2651
Bsu15I	ATCGAT	1 cut(s)	2707
Bsu36I	CCTNAGG	1 cut(s)	2132
BsuI	GTATCC	1 cut(s)	2270
BsuRI	GGCC	4 cut(s)	294, 353, 1797, 2557
BsuTUI	ATCGAT	1 cut(s)	2707
BtgI	CCRYGG	1 cut(s)	2562
BtgZI	GCGATG	2 cut(s)	975, 1446
BtsCI	GGATG	7 cut(s)	691, 866, 1168, 1356, 2166, 2407, 2511
BtsI	GCAGTG	2 cut(s)	637, 1469
BtsIMutI	CAGTG	7 cut(s)	281, 363, 445, 605, 637, 1301, 1469
BtuMI	TCGCGA	1 cut(s)	1564
BveI	ACCTGC	1 cut(s)	1676
Cac8I	GCNNGC	3 cut(s)	414, 1258, 2534
CaiI	CAGNNNCTG	1 cut(s)	636
CciI	TCATGA	1 cut(s)	2116
CfoI	GCGC	4 cut(s)	550, 949, 1262, 2073
Cfr13I	GGNCC	3 cut(s)	351, 352, 1053
ClaI	ATCGAT	1 cut(s)	2707
CseI	GACGC	3 cut(s)	74, 432, 1140
Csp6I	GTAC	3 cut(s)	1292, 1299, 1827
CviQI	GTAC	3 cut(s)	1292, 1299, 1827
DdeI	CTNAG	9 cut(s)	597, 1102, 1147, 1181, 1336, 1488, 1509, 2132, 2600
DraI	TTTAAA	1 cut(s)	1900
DrdI	GACNNNNNNGTC	1 cut(s)	2698
DseDI	GACNNNNNNGTC	1 cut(s)	2698
EaeI	YGGCCR	2 cut(s)	292, 1795
EciI	GGCGGA	2 cut(s)	795, 1818
Ecl136II	GAGCTC	1 cut(s)	1021
Eco130I	CCWWGG	2 cut(s)	1798, 2562
Eco24I	GRGCYC	4 cut(s)	355, 414, 434, 1023
Eco31I	GGTCTC	1 cut(s)	252
Eco47I	GGWCC	1 cut(s)	1053
Eco47III	AGCGCT	1 cut(s)	1261
Eco53kI	GAGCTC	1 cut(s)	1021
Eco57I	CTGAAG	6 cut(s)	474, 735, 1399, 1568, 1800, 1913
Eco81I	CCTNAGG	1 cut(s)	2132
Eco88I	CYCGRG	1 cut(s)	2097
EcoICRI	GAGCTC	1 cut(s)	1021
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	3 cut(s)	354, 1158, 1264
EcoT14I	CCWWGG	2 cut(s)	1798, 2562
EcoT22I	ATGCAT	3 cut(s)	508, 2513, 2640
EcoT38I	GRGCYC	4 cut(s)	355, 414, 434, 1023
ErhI	CCWWGG	2 cut(s)	1798, 2562
Esp3I	CGTCTC	2 cut(s)	166, 1150
FaqI	GGGAC	6 cut(s)	539, 775, 1011, 1297, 2281, 2461
FauI	CCCGC	3 cut(s)	421, 905, 1546
FauNDI	CATATG	1 cut(s)	347
FbaI	TGATCA	3 cut(s)	328, 2020, 2233
FblI	GTMKAC	1 cut(s)	1353
Fnu4HI	GCNGC	8 cut(s)	20, 537, 798, 910, 988, 1215, 1457, 2550
FokI	GGATG	7 cut(s)	698, 853, 1175, 1343, 2153, 2414, 2498
FriOI	GRGCYC	4 cut(s)	355, 414, 434, 1023
Fsp4HI	GCNGC	8 cut(s)	20, 537, 798, 910, 988, 1215, 1457, 2550
FspBI	CTAG	4 cut(s)	1319, 2462, 2553, 2773
GlaI	GCGC	4 cut(s)	549, 948, 1261, 2072
GluI	GCNGC	8 cut(s)	20, 537, 798, 910, 988, 1215, 1457, 2550
GsaI	CCCAGC	3 cut(s)	711, 1318, 1407
GsuI	CTGGAG	3 cut(s)	118, 1248, 2271
HaeII	RGCGCY	1 cut(s)	1263
HaeIII	GGCC	4 cut(s)	294, 353, 1797, 2557
HapII	CCGG	3 cut(s)	53, 1304, 1936
HgaI	GACGC	3 cut(s)	74, 432, 1140
HhaI	GCGC	4 cut(s)	550, 949, 1262, 2073
Hin6I	GCGC	4 cut(s)	548, 947, 1260, 2071
HinP1I	GCGC	4 cut(s)	548, 947, 1260, 2071
HincII	GTYRAC	1 cut(s)	64
HindII	GTYRAC	1 cut(s)	64
HindIII	AAGCTT	2 cut(s)	1925, 2745
HpaII	CCGG	3 cut(s)	53, 1304, 1936
HphI	GGTGA	4 cut(s)	376, 852, 1700, 2701
Hpy166II	GTNNAC	7 cut(s)	64, 1132, 1299, 1354, 1819, 2051, 2369
Hpy8I	GTNNAC	7 cut(s)	64, 1132, 1299, 1354, 1819, 2051, 2369
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	4 cut(s)	671, 759, 818, 2438
HpyCH4IV	ACGT	3 cut(s)	1143, 1449, 1632
HpyF10VI	GCNNNNNNNGC	9 cut(s)	545, 636, 918, 987, 1164, 1332, 1462, 1471, 2529
HpyF3I	CTNAG	9 cut(s)	597, 1102, 1147, 1181, 1336, 1488, 1509, 2132, 2600
HpySE526I	ACGT	3 cut(s)	1143, 1449, 1632
HspAI	GCGC	4 cut(s)	548, 947, 1260, 2071
Ksp22I	TGATCA	3 cut(s)	328, 2020, 2233
LmnI	GCTCC	6 cut(s)	55, 99, 689, 1091, 1267, 2290
Lsp1109I	GCAGC	7 cut(s)	6, 548, 809, 921, 974, 1443, 2536
LweI	GCATC	6 cut(s)	515, 2167, 2498, 2520, 2576, 2741
MaeI	CTAG	4 cut(s)	1319, 2462, 2553, 2773
MaeII	ACGT	3 cut(s)	1143, 1449, 1632
MaeIII	GTNAC	9 cut(s)	287, 632, 839, 858, 875, 1270, 1409, 2162, 2689
MbiI	CCGCTC	1 cut(s)	1086
MflI	RGATCY	2 cut(s)	2467, 2651
MhlI	GDGCHC	5 cut(s)	355, 414, 434, 598, 1023
MlsI	TGGCCA	1 cut(s)	1797
MluNI	TGGCCA	1 cut(s)	1797
MlyI	GAGTC	2 cut(s)	1401, 2263
MmeI	TCCRAC	8 cut(s)	198, 465, 894, 1080, 2417, 2495, 2629, 2679
Mox20I	TGGCCA	1 cut(s)	1797
Mph1103I	ATGCAT	3 cut(s)	508, 2513, 2640
MroXI	GAANNNNTTC	1 cut(s)	1983
MscI	TGGCCA	1 cut(s)	1797
MslI	CAYNNNNRTG	2 cut(s)	386, 2643
Msp20I	TGGCCA	1 cut(s)	1797
MspA1I	CMGCKG	6 cut(s)	86, 711, 755, 912, 970, 1407
MspI	CCGG	3 cut(s)	53, 1304, 1936
MspR9I	CCNGG	3 cut(s)	356, 1160, 1266
Mva1269I	GAATGC	1 cut(s)	983
MvaI	CCWGG	3 cut(s)	356, 1160, 1266
MvnI	CGCG	1 cut(s)	1564
MwoI	GCNNNNNNNGC	9 cut(s)	545, 636, 918, 987, 1164, 1332, 1462, 1471, 2529
NcoI	CCATGG	1 cut(s)	2562
NdeI	CATATG	1 cut(s)	347
NlaIV	GGNNCC	8 cut(s)	197, 223, 353, 1099, 1228, 1345, 2286, 2653
NmuCI	GTSAC	4 cut(s)	632, 858, 1270, 2689
NruI	TCGCGA	1 cut(s)	1564
NsiI	ATGCAT	3 cut(s)	508, 2513, 2640
NspI	RCATGY	2 cut(s)	548, 2662
PaeR7I	CTCGAG	1 cut(s)	2097
PagI	TCATGA	1 cut(s)	2116
PaqCI	CACCTGC	1 cut(s)	1676
PasI	CCCWGGG	1 cut(s)	355
PciI	ACATGT	1 cut(s)	2658
PcsI	WCGNNNNNNNCGW	1 cut(s)	405
PctI	GAATGC	1 cut(s)	983
PdmI	GAANNNNTTC	1 cut(s)	1983
PfeI	GAWTC	8 cut(s)	396, 518, 647, 758, 998, 1727, 2123, 2188
PflFI	GACNNNGTC	1 cut(s)	2695
PkrI	GCNGC	8 cut(s)	21, 538, 799, 911, 989, 1216, 1458, 2551
Ple19I	CGATCG	1 cut(s)	2707
PleI	GAGTC	2 cut(s)	1400, 2262
PpsI	GAGTC	2 cut(s)	1400, 2262
PscI	ACATGT	1 cut(s)	2658
PshAI	GACNNNNGTC	1 cut(s)	276
Psp124BI	GAGCTC	1 cut(s)	1023
Psp6I	CCWGG	3 cut(s)	354, 1158, 1264
PspFI	CCCAGC	3 cut(s)	707, 1314, 1403
PspGI	CCWGG	3 cut(s)	354, 1158, 1264
PspN4I	GGNNCC	8 cut(s)	197, 223, 353, 1099, 1228, 1345, 2286, 2653
PspOMI	GGGCCC	1 cut(s)	351
PspPI	GGNCC	3 cut(s)	351, 352, 1053
PspXI	VCTCGAGB	1 cut(s)	2097
PstI	CTGCAG	4 cut(s)	562, 632, 799, 1687
PstNI	CAGNNNCTG	1 cut(s)	636
PsuI	RGATCY	2 cut(s)	2467, 2651
PsyI	GACNNNGTC	1 cut(s)	2695
PvuI	CGATCG	1 cut(s)	2707
PvuII	CAGCTG	4 cut(s)	86, 711, 755, 1407
RruI	TCGCGA	1 cut(s)	1564
RsaI	GTAC	3 cut(s)	1293, 1300, 1828
RsaNI	GTAC	3 cut(s)	1292, 1299, 1827
RseI	CAYNNNNRTG	2 cut(s)	386, 2643
SacI	GAGCTC	1 cut(s)	1023
SatI	GCNGC	8 cut(s)	20, 537, 798, 910, 988, 1215, 1457, 2550
Sau96I	GGNCC	3 cut(s)	351, 352, 1053
SbfI	CCTGCAGG	2 cut(s)	562, 1687
SchI	GAGTC	2 cut(s)	1401, 2263
ScrFI	CCNGG	3 cut(s)	356, 1160, 1266
SdaI	CCTGCAGG	2 cut(s)	562, 1687
SduI	GDGCHC	5 cut(s)	355, 414, 434, 598, 1023
SfaNI	GCATC	6 cut(s)	515, 2167, 2498, 2520, 2576, 2741
SfcI	CTRYAG	8 cut(s)	250, 558, 628, 777, 795, 813, 1683, 2332
Sfr274I	CTCGAG	1 cut(s)	2097
SinI	GGWCC	1 cut(s)	1053
SlaI	CTCGAG	1 cut(s)	2097
SmiMI	CAYNNNNRTG	2 cut(s)	386, 2643
SmlI	CTYRAG	2 cut(s)	2097, 2241
SmoI	CTYRAG	2 cut(s)	2097, 2241
Sse8387I	CCTGCAGG	2 cut(s)	562, 1687
SsiI	CCGC	9 cut(s)	414, 806, 912, 968, 1084, 1215, 1539, 1724, 1803
SspI	AATATT	1 cut(s)	772
SspMI	CTAG	4 cut(s)	1319, 2462, 2553, 2773
SstI	GAGCTC	1 cut(s)	1023
StyD4I	CCNGG	3 cut(s)	354, 1158, 1264
StyI	CCWWGG	2 cut(s)	1798, 2562
TaiI	ACGT	3 cut(s)	1146, 1452, 1635
TaqI	TCGA	9 cut(s)	370, 377, 399, 428, 521, 1570, 2098, 2257, 2707
TatI	WGTACW	1 cut(s)	1291
TauI	GCSGC	1 cut(s)	1217
TfiI	GAWTC	8 cut(s)	396, 518, 647, 758, 998, 1727, 2123, 2188
TscAI	CASTG	7 cut(s)	281, 370, 445, 605, 637, 1301, 1476
TseFI	GTSAC	4 cut(s)	632, 858, 1270, 2689
TseI	GCWGC	7 cut(s)	19, 536, 797, 909, 987, 1456, 2549
Tsp45I	GTSAC	4 cut(s)	632, 858, 1270, 2689
TspGWI	ACGGA	4 cut(s)	777, 1421, 2378, 2494
TspRI	CASTG	7 cut(s)	281, 370, 445, 605, 637, 1301, 1476
Tth111I	GACNNNGTC	1 cut(s)	2695
VpaK11BI	GGWCC	1 cut(s)	1053
XapI	RAATTY	7 cut(s)	4, 530, 660, 1873, 1888, 1895, 1939
XceI	RCATGY	2 cut(s)	548, 2662
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1805
XhoI	CTCGAG	1 cut(s)	2097
XmiI	GTMKAC	1 cut(s)	1353
XmnI	GAANNNNTTC	1 cut(s)	1983
XspI	CTAG	4 cut(s)	1319, 2462, 2553, 2773
Zsp2I	ATGCAT	3 cut(s)	508, 2513, 2640

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.