Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0000086

Physical Location & Seq

Genomic Coordinates Forward (+)

5844822 .. 5847210

Gene Structure 2389 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G003210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGCGGAAGCCAACGCCGGCGTAGAGGAACCGTCGGAAAAGCAAAGAAAAACCAAAGTAGCAGAAGAAATCAAATCTGCAGAAGCTTTGCAATTCGACTTTCGCTCCATTAGAGCTGCCACAAATAACTTTTCGGAAGCAAATAAACTTGGACGGGGAGGGTTTGGTATTGTTTACAGGGGTATACTCCCCGATGATAAGGACATAGCGGTTAAAAGGCTTTCGAGGGATTCTGCACAAGGAGATTTAGAATTCAAAACTGAGGTCTCGCTAGTGGCCAGGCTTCAACATAGGAATTTGGTTAGGCTTCTTGGTTTCTGCCTGGGAAAAAATGAAAAGATTCTTGTTTATGAGTTTGTCCCTAACGGAAGTCTTGATCAATTCATATTTGGTGAAGTCAAGCGCGCACATTTGGATTGGGATGTTCGGCTCCTTTACCTTCATGAAGATTCTCGTCTTAAAATCATTCACCGTGATCTCAAAGCTAGCAACATTCTATTAGATGCAGACATGAACCCCAAAGTTGCAGATTTTGGTATGGCGAGATTGTTTGATCTTGATCAATCACAAGGCGAAACCAGACGAGTTGTGGGAACTTACGGATATATGGCTCCAGAGTATGTGATGCGTGGACAATTTTCGGTTAAGTCTGATGTCTTTAGCTTTGGTGTCTTAGTTTTGGAGATAGTAAGTGGACAAAAGAATAGTTCTTTTCGTAATAGAGGAAATGTGGAGGATCTTCTAAGCTATGCATGGAGAAATTGGAGAGCAGATACGGCTTCAAATATAATAGAGCCCATCTTGAGTTCTGGTTCAAGAACTGAGATGATGAGATGCATCAACATTGGATTGTTATGTGTGCAACAAAATATAGCTGATAGGCCAACTATGACTTCAGTTATTCTCATGCTCACCGGCAACTCTCTCTCTCTTCCAGTACCCTCACAGCCAGCATTTTTTATGGGTGCATCCGACTTTTCAAAGGTTGTAGAATTGGATCAAGCTCGAAGCAGTAGTTCTGTCCAAAAATCTGTTAATGAGGCTTCAATTACTGAACTATCTCCTCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0033993 GO:0036211 GO:0042221 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0097305 GO:0098542 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

356

Amino Acids

39.8

Weight (kDa)

6.93

Isoelectric Point (pI)

42.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	45 - 299	1.1e-40	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	47 - 301	3.1e-41	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21230 AT4G21400 AT4G21400 AT4G21400 AT4G21400 AT4G21400 AT4G21400 AT4G21400 AT4G21400 AT4G21410 AT4G21410 AT4G21410 AT4G38830
fragaria_vesca	FvH4_2g29861 FvH4_2g29861 FvH4_2g29870 FvH4_2g29870 FvH4_2g29870 FvH4_2g29871 FvH4_2g29871 FvH4_2g29875 FvH4_2g29878 FvH4_3g02833 FvH4_3g02833 FvH4_3g02834 FvH4_3g02870 FvH4_3g19870 FvH4_3g19870 FvH4_3g19870 FvH4_3g19870 FvH4_3g20010
malus_domestica	MD00G1101400.v1.1 MD00G1101700.v1.1 MD01G1027900.v1.1 MD02G1101400.v1.1 MD05G1336800.v1.1 MD05G1337000.v1.1 MD05G1337300.v1.1 MD05G1337400.v1.1 MD05G1337500.v1.1 MD07G1014000.v1.1 MD08G1139800.v1.1 MD08G1139900.v1.1 MD08G1140000.v1.1 MD08G1140100.v1.1 MD08G1140200.v1.1 MD08G1140400.v1.1 MD10G1312200.v1.1 MD10G1312500.v1.1 MD15G1117400.v1.1
prunus_persica	Prupe.1G174500_v2.0.a1 Prupe.1G468600_v2.0.a1 Prupe.1G469000_v2.0.a1 Prupe.1G469100_v2.0.a1 Prupe.1G469200_v2.0.a1 Prupe.1G469300_v2.0.a1 Prupe.4G027900_v2.0.a1 Prupe.4G028000_v2.0.a1 Prupe.4G028100_v2.0.a1 Prupe.4G028100_v2.0.a1 Prupe.4G028200_v2.0.a1 Prupe.4G028600_v2.0.a1 Prupe.4G028700_v2.0.a1 Prupe.4G028700_v2.0.a1 Prupe.4G028700_v2.0.a1 Prupe.4G028700_v2.0.a1 Prupe.4G028800_v2.0.a1 Prupe.4G100700_v2.0.a1 Prupe.6G183400_v2.0.a1 Prupe.6G183500_v2.0.a1 Prupe.6G183600_v2.0.a1 Prupe.6G184100_v2.0.a1 Prupe.6G184400_v2.0.a1 Prupe.6G184500_v2.0.a1
pyrus_communis	pycom01g05620 pycom01g05630 pycom05g30820 pycom05g30840 pycom05g30860 pycom05g30880 pycom05g30890 pycom05g30900 pycom08g11780 pycom08g11850 pycom10g26340 pycom10g26350 pycom10g26360 pycom10g26400 pycom10g26410 pycom15g10580
rosa_chinensis	RchiOBHm_Chr1g0313011 RchiOBHm_Chr1g0319461 RchiOBHm_Chr1g0319511 RchiOBHm_Chr2g0114611 RchiOBHm_Chr2g0114631 RchiOBHm_Chr2g0114691 RchiOBHm_Chr2g0114741 RchiOBHm_Chr2g0114751 RchiOBHm_Chr2g0114781 RchiOBHm_Chr2g0114791 RchiOBHm_Chr3g0494511 RchiOBHm_Chr3g0494521 RchiOBHm_Chr4g0413731 RchiOBHm_Chr5g0004271 RchiOBHm_Chr5g0004291 RchiOBHm_Chr5g0004301 RchiOBHm_Chr5g0004341 RchiOBHm_Chr5g0004351 RchiOBHm_Chr5g0004371 RchiOBHm_Chr5g0033301 RchiOBHm_Chr5g0033311 RchiOBHm_Chr5g0033341 RchiOBHm_Chr5g0033361 RchiOBHm_Chr5g0033391 RchiOBHm_Chr5g0033401 RchiOBHm_Chr5g0033431 RchiOBHm_Chr5g0033451 RchiOBHm_Chr5g0033461 RchiOBHm_Chr5g0033531 RchiOBHm_Chr5g0033541 RchiOBHm_Chr5g0033711 RchiOBHm_Chr5g0033851 RchiOBHm_Chr5g0033861 RchiOBHm_Chr5g0033871 RchiOBHm_Chr5g0054051 RchiOBHm_Chr5g0069631 RchiOBHm_Chr6g0265231 RchiOBHm_Chr6g0298941 RchiOBHm_Chr6g0298951 RchiOBHm_Chr6g0299001 RchiOBHm_Chr6g0299011 RchiOBHm_Chr6g0299021
rosa_laevigata	RLG00000008198 RLG00000010335 RLG00000011468 RLG00000011471 RLG00000014070 RLG00000014071 RLG00000018116 RLG00000018125 RLG00000031219 RLG00000031220 RLG00000031221 RLG00000031222 RLG00000031224 RLG00000033469 RLG00000033471 RLG00000033473 RLG00000033476 RLG00000033477 RLG00000033479 RLG00000033480 RLG00000033483 RLG00000035638
rosa_multiflora	Rmu_co8063382.1_g000001 Rmu_co8095246.1_g000001 Rmu_sc0000370.1_g000009 Rmu_sc0000370.1_g000019 Rmu_sc0000371.1_g000023 Rmu_sc0000371.1_g000036 Rmu_sc0000433.1_g000023 Rmu_sc0000433.1_g000024 Rmu_sc0000545.1_g000004 Rmu_sc0000981.1_g000001 Rmu_sc0001150.1_g000032 Rmu_sc0001242.1_g000004 Rmu_sc0001242.1_g000008 Rmu_sc0001522.1_g000035 Rmu_sc0002206.1_g000008 Rmu_sc0002206.1_g000021 Rmu_sc0002453.1_g000008 Rmu_sc0002453.1_g000018 Rmu_sc0003286.1_g000007 Rmu_sc0003286.1_g000013 Rmu_sc0004133.1_g000005 Rmu_sc0005660.1_g000005 Rmu_sc0005660.1_g000019 Rmu_sc0005660.1_g000025 Rmu_sc0005870.1_g000017 Rmu_sc0005870.1_g000022 Rmu_sc0006083.1_g000003 Rmu_sc0008092.1_g000016 Rmu_sc0008210.1_g000007 Rmu_sc0009715.1_g000001 Rmu_sc0011893.1_g000003 Rmu_sc0011893.1_g000004 Rmu_sc0015325.1_g000002 Rmu_sc0029922.1_g000001 Rmu_ssc0000359.1_g000017 Rmu_ssc0000424.1_g000009
rosa_roxburghii	Rroxscaffold_175G00432170 Rroxscaffold_1G00022110 Rroxscaffold_1G00046520 Rroxscaffold_1G00046550 Rroxscaffold_1G00046600 Rroxscaffold_1G00046650 Rroxscaffold_1G00046680 Rroxscaffold_1G00071130 Rroxscaffold_1G00071380 Rroxscaffold_1G00071410 Rroxscaffold_2G00130310 Rroxscaffold_2G00130320 Rroxscaffold_2G00130330 Rroxscaffold_4G00328340 Rroxscaffold_4G00328360 Rroxscaffold_4G00328370 Rroxscaffold_5G00357650 Rroxscaffold_7G00156890 Rroxscaffold_7G00169080 Rroxscaffold_7G00169090 Rroxscaffold_7G00169100 Rroxscaffold_7G00169170 Rroxscaffold_7G00169190
rosa_rugosa	Rorug01G0027900 Rorug01G0130600 Rorug02G0190700 Rorug04G0411000 Rorug04G0411000 Rorug04G0411200 Rorug04G0411300 Rorug04G0411400 Rorug04G0411500 Rorug05G0139300 Rorug05G0139500 Rorug05G0139800 Rorug05G0139900 Rorug05G0187000 Rorug05G0187000 Rorug05G0187000 Rorug05G0398900 Rorug06G0034600 Rorug06G0283900 Rorug06G0284000 Rorug06G0284100 Rorug06G0394700
rosa_samantha	Rh1BG036800 Rh1CG040700 Rh1CG040800 Rh1DG000200 Rh1DG028900 Rh1DG090600 Rh2AG248900 Rh2CG252600 Rh2CG253100 Rh2CG253500 Rh2CG253600 Rh2CG253900 Rh4DG177700 Rh5CG041500 Rh5CG041700 Rh5CG042100 Rh5CG260400 Rh5CG260500 Rh5CG260600 Rh5CG260900 Rh5CG261100 Rh5DG037300 Rh5DG037400 Rh5DG037500 Rh5DG236800 Rh5DG236900 Rh5DG237100 Rh5DG237500 Rh5DG237600 Rh5DG237700 Rh5DG241100 Rh6CG134500 Rh6CG409700 Rh6CG409800 Rh6CG410100 Rh6DG120900 Rh6DG396500 Rh6DG396600 Rh6DG396700 Rh6DG514400
rosa_wichuraiana	Rw1G003200 Rw1G003210 Rw1G003230 Rw2G019350 Rw4G015240 Rw5G003500 Rw5G003520 Rw5G003530 Rw5G003690 Rw5G003720 Rw5G003730 Rw5G021090 Rw5G021100 Rw5G021110 Rw5G021120 Rw5G021130 Rw6G011870 Rw6G034630 Rw7G038700

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	184
AccII	CGCG	1 cut(s)	405
AciI	CCGC	2 cut(s)	5, 209
AclWI	GGATC	2 cut(s)	744, 1005
AcoI	YGGCCR	1 cut(s)	276
AcsI	RAATTY	2 cut(s)	251, 295
AcuI	CTGAAG	1 cut(s)	879
AfaI	GTAC	1 cut(s)	939
AgsI	TTSAA	6 cut(s)	256, 287, 783, 816, 981, 1047
AjnI	CCWGG	2 cut(s)	278, 321
AjuI	GAANNNNNNNTTGG	2 cut(s)	877, 909
AluBI	AGCT	7 cut(s)	86, 116, 485, 663, 747, 875, 1004
AluI	AGCT	7 cut(s)	86, 116, 485, 663, 747, 875, 1004
Alw26I	GTCTC	1 cut(s)	271
AlwI	GGATC	2 cut(s)	744, 1005
AoxI	GGCC	2 cut(s)	276, 881
ApeKI	GCWGC	1 cut(s)	116
ApoI	RAATTY	2 cut(s)	251, 295
ArsI	GACNNNNNNTTYG	2 cut(s)	249, 281
Asp700I	GAANNNNTTC	1 cut(s)	339
AspLEI	GCGC	2 cut(s)	405, 407
AsuHPI	GGTGA	3 cut(s)	404, 461, 904
AsuNHI	GCTAGC	1 cut(s)	485
BalI	TGGCCA	1 cut(s)	278
BanII	GRGCYC	1 cut(s)	798
BbvI	GCAGC	1 cut(s)	103
BccI	CCATC	1 cut(s)	806
BceAI	ACGGC	1 cut(s)	792
BciT130I	CCWGG	2 cut(s)	280, 323
BclI	TGATCA	2 cut(s)	376, 559
BcoDI	GTCTC	1 cut(s)	271
BfaI	CTAG	2 cut(s)	272, 486
BfmI	CTRYAG	1 cut(s)	78
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
Bme1390I	CCNGG	2 cut(s)	280, 323
BmiI	GGNNCC	3 cut(s)	30, 431, 612
BmrFI	CCNGG	2 cut(s)	280, 323
BmsI	GCATC	5 cut(s)	493, 615, 824, 846, 977
BmtI	GCTAGC	1 cut(s)	489
BpmI	CTGGAG	1 cut(s)	597
BpuEI	CTTGAG	1 cut(s)	823
BsaBI	GATNNNNATC	1 cut(s)	558
BsaI	GGTCTC	1 cut(s)	271
BsaJI	CCNNGG	1 cut(s)	322
BsaXI	ACNNNNNCTCC	2 cut(s)	89, 119
Bse118I	RCCGGY	2 cut(s)	17, 914
Bse1I	ACTGG	1 cut(s)	935
Bse8I	GATNNNNATC	1 cut(s)	558
BseBI	CCWGG	2 cut(s)	280, 323
BseDI	CCNNGG	1 cut(s)	322
BseGI	GGATG	2 cut(s)	427, 968
BseJI	GATNNNNATC	1 cut(s)	558
BseMII	CTCAG	2 cut(s)	252, 813
BseNI	ACTGG	1 cut(s)	935
BsePI	GCGCGC	1 cut(s)	403
BseRI	GAGGAG	1 cut(s)	1053
BseXI	GCAGC	1 cut(s)	103
BsgI	GTGCAG	1 cut(s)	219
Bsh1236I	CGCG	1 cut(s)	405
BshFI	GGCC	2 cut(s)	278, 883
BsiSI	CCGG	2 cut(s)	18, 915
BslFI	GGGAC	1 cut(s)	344
BsmAI	GTCTC	1 cut(s)	271
BsmFI	GGGAC	1 cut(s)	344
BsnI	GGCC	2 cut(s)	278, 883
Bso31I	GGTCTC	1 cut(s)	271
Bsp1286I	GDGCHC	1 cut(s)	798
Bsp143I	GATC	6 cut(s)	376, 475, 553, 559, 736, 997
BspACI	CCGC	2 cut(s)	5, 209
BspANI	GGCC	2 cut(s)	278, 883
BspCNI	CTCAG	2 cut(s)	253, 814
BspFNI	CGCG	1 cut(s)	405
BspHI	TCATGA	1 cut(s)	442
BspLI	GGNNCC	3 cut(s)	30, 431, 612
BspMAI	CTGCAG	1 cut(s)	82
BspOI	GCTAGC	1 cut(s)	489
BspPI	GGATC	2 cut(s)	744, 1005
BspTNI	GGTCTC	1 cut(s)	271
BsrFI	RCCGGY	2 cut(s)	17, 914
BsrI	ACTGG	1 cut(s)	935
BssAI	RCCGGY	2 cut(s)	17, 914
BssECI	CCNNGG	1 cut(s)	322
BssHII	GCGCGC	1 cut(s)	403
BssMI	GATC	6 cut(s)	376, 475, 553, 559, 736, 997
BssNAI	GTATAC	1 cut(s)	185
Bst1107I	GTATAC	1 cut(s)	185
Bst2UI	CCWGG	2 cut(s)	280, 323
Bst4CI	ACNGT	2 cut(s)	33, 473
Bst6I	CTCTTC	1 cut(s)	936
BstC8I	GCNNGC	4 cut(s)	19, 405, 487, 951
BstDEI	CTNAG	4 cut(s)	261, 673, 743, 822
BstF5I	GGATG	2 cut(s)	427, 968
BstFNI	CGCG	1 cut(s)	405
BstHHI	GCGC	2 cut(s)	405, 407
BstKTI	GATC	6 cut(s)	379, 478, 556, 562, 739, 1000
BstMAI	GTCTC	1 cut(s)	271
BstMBI	GATC	6 cut(s)	376, 475, 553, 559, 736, 997
BstMWI	GCNNNNNNNGC	1 cut(s)	776
BstNI	CCWGG	2 cut(s)	280, 323
BstSCI	CCNGG	2 cut(s)	278, 321
BstSFI	CTRYAG	1 cut(s)	78
BstUI	CGCG	1 cut(s)	405
BstV1I	GCAGC	1 cut(s)	103
BstX2I	RGATCY	1 cut(s)	736
BstYI	RGATCY	1 cut(s)	736
BstZ17I	GTATAC	1 cut(s)	185
BsuRI	GGCC	2 cut(s)	278, 883
BtsCI	GGATG	2 cut(s)	427, 968
Cac8I	GCNNGC	4 cut(s)	19, 405, 487, 951
CciI	TCATGA	1 cut(s)	442
CfoI	GCGC	2 cut(s)	405, 407
Cfr10I	RCCGGY	2 cut(s)	17, 914
Csp6I	GTAC	1 cut(s)	938
CviAII	CATG	4 cut(s)	443, 511, 753, 907
CviQI	GTAC	1 cut(s)	938
DdeI	CTNAG	4 cut(s)	261, 673, 743, 822
DpnI	GATC	6 cut(s)	378, 477, 555, 561, 738, 999
DpnII	GATC	6 cut(s)	376, 475, 553, 559, 736, 997
EaeI	YGGCCR	1 cut(s)	276
Eam1104I	CTCTTC	1 cut(s)	936
EarI	CTCTTC	1 cut(s)	936
EciI	GGCGGA	1 cut(s)	20
Eco24I	GRGCYC	1 cut(s)	798
Eco31I	GGTCTC	1 cut(s)	271
Eco57I	CTGAAG	1 cut(s)	879
EcoRI	GAATTC	1 cut(s)	251
EcoRII	CCWGG	2 cut(s)	278, 321
EcoT22I	ATGCAT	2 cut(s)	754, 839
EcoT38I	GRGCYC	1 cut(s)	798
FaeI	CATG	4 cut(s)	446, 514, 756, 910
FaqI	GGGAC	1 cut(s)	344
FatI	CATG	4 cut(s)	442, 510, 752, 906
FbaI	TGATCA	2 cut(s)	376, 559
FblI	GTMKAC	1 cut(s)	184
Fnu4HI	GCNGC	1 cut(s)	117
FokI	GGATG	2 cut(s)	434, 955
FriOI	GRGCYC	1 cut(s)	798
Fsp4HI	GCNGC	1 cut(s)	117
FspBI	CTAG	2 cut(s)	272, 486
GlaI	GCGC	2 cut(s)	404, 406
GluI	GCNGC	1 cut(s)	117
GsuI	CTGGAG	1 cut(s)	597
HaeIII	GGCC	2 cut(s)	278, 883
HapII	CCGG	2 cut(s)	18, 915
HhaI	GCGC	2 cut(s)	405, 407
Hin1II	CATG	4 cut(s)	446, 514, 756, 910
Hin6I	GCGC	2 cut(s)	403, 405
HinP1I	GCGC	2 cut(s)	403, 405
HindIII	AAGCTT	1 cut(s)	84
HinfI	GANTC	3 cut(s)	230, 340, 449
HpaII	CCGG	2 cut(s)	18, 915
HphI	GGTGA	3 cut(s)	404, 461, 904
Hpy166II	GTNNAC	4 cut(s)	175, 185, 632, 695
Hpy188I	TCNGA	4 cut(s)	37, 136, 652, 973
Hpy188III	TCNNGA	6 cut(s)	374, 443, 557, 614, 802, 816
Hpy8I	GTNNAC	4 cut(s)	175, 185, 632, 695
Hpy99I	CGWCG	1 cut(s)	37
HpyAV	CCTTC	1 cut(s)	449
HpyCH4III	ACNGT	2 cut(s)	33, 473
HpyCH4V	TGCA	9 cut(s)	80, 91, 236, 506, 527, 752, 837, 862, 968
HpyF10VI	GCNNNNNNNGC	1 cut(s)	776
HpyF3I	CTNAG	4 cut(s)	261, 673, 743, 822
Hsp92II	CATG	4 cut(s)	446, 514, 756, 910
HspAI	GCGC	2 cut(s)	403, 405
KroI	GCCGGC	1 cut(s)	17
KroNI	GCCGGC	1 cut(s)	19
Ksp22I	TGATCA	2 cut(s)	376, 559
Kzo9I	GATC	6 cut(s)	376, 475, 553, 559, 736, 997
LmnI	GCTCC	3 cut(s)	110, 435, 616
Lsp1109I	GCAGC	1 cut(s)	103
LweI	GCATC	5 cut(s)	493, 615, 824, 846, 977
MaeI	CTAG	2 cut(s)	272, 486
MalI	GATC	6 cut(s)	378, 477, 555, 561, 738, 999
MboI	GATC	6 cut(s)	376, 475, 553, 559, 736, 997
MboII	GAAGA	4 cut(s)	77, 458, 731, 923
MflI	RGATCY	1 cut(s)	736
MhlI	GDGCHC	1 cut(s)	798
MlsI	TGGCCA	1 cut(s)	278
MluCI	AATT	8 cut(s)	92, 251, 295, 380, 635, 760, 992, 1047
MluNI	TGGCCA	1 cut(s)	278
MmeI	TCCRAC	2 cut(s)	15, 996
MnlI	CCTC	8 cut(s)	19, 152, 219, 256, 716, 727, 952, 1033
Mox20I	TGGCCA	1 cut(s)	278
Mph1103I	ATGCAT	2 cut(s)	754, 839
MreI	CGCCGGCG	1 cut(s)	17
MroNI	GCCGGC	1 cut(s)	17
MroXI	GAANNNNTTC	1 cut(s)	339
MscI	TGGCCA	1 cut(s)	278
MseI	TTAA	4 cut(s)	213, 459, 645, 1035
Msp20I	TGGCCA	1 cut(s)	278
MspI	CCGG	2 cut(s)	18, 915
MspR9I	CCNGG	2 cut(s)	280, 323
MvaI	CCWGG	2 cut(s)	280, 323
MvnI	CGCG	1 cut(s)	405
MwoI	GCNNNNNNNGC	1 cut(s)	776
NaeI	GCCGGC	1 cut(s)	19
NdeII	GATC	6 cut(s)	376, 475, 553, 559, 736, 997
NgoMIV	GCCGGC	1 cut(s)	17
NheI	GCTAGC	1 cut(s)	485
NlaIII	CATG	4 cut(s)	446, 514, 756, 910
NlaIV	GGNNCC	3 cut(s)	30, 431, 612
NsiI	ATGCAT	2 cut(s)	754, 839
PagI	TCATGA	1 cut(s)	442
PauI	GCGCGC	1 cut(s)	403
PdiI	GCCGGC	1 cut(s)	19
PdmI	GAANNNNTTC	1 cut(s)	339
PfeI	GAWTC	3 cut(s)	230, 340, 449
PkrI	GCNGC	1 cut(s)	118
Psp6I	CCWGG	2 cut(s)	278, 321
PspGI	CCWGG	2 cut(s)	278, 321
PspN4I	GGNNCC	3 cut(s)	30, 431, 612
PstI	CTGCAG	1 cut(s)	82
PsuI	RGATCY	1 cut(s)	736
PteI	GCGCGC	1 cut(s)	403
RsaI	GTAC	1 cut(s)	939
RsaNI	GTAC	1 cut(s)	938
SaqAI	TTAA	4 cut(s)	213, 459, 645, 1035
SatI	GCNGC	1 cut(s)	117
Sau3AI	GATC	6 cut(s)	376, 475, 553, 559, 736, 997
ScrFI	CCNGG	2 cut(s)	280, 323
SduI	GDGCHC	1 cut(s)	798
SfaNI	GCATC	5 cut(s)	493, 615, 824, 846, 977
SfcI	CTRYAG	1 cut(s)	78
SgrAI	CRCCGGYG	1 cut(s)	17
SmlI	CTYRAG	1 cut(s)	802
SmoI	CTYRAG	1 cut(s)	802
Sse9I	AATT	8 cut(s)	92, 251, 295, 380, 635, 760, 992, 1047
SsiI	CCGC	2 cut(s)	5, 209
SspMI	CTAG	2 cut(s)	272, 486
StyD4I	CCNGG	2 cut(s)	278, 321
TaaI	ACNGT	2 cut(s)	33, 473
TaqI	TCGA	3 cut(s)	96, 224, 1006
TasI	AATT	8 cut(s)	92, 251, 295, 380, 635, 760, 992, 1047
TfiI	GAWTC	3 cut(s)	230, 340, 449
Tru1I	TTAA	4 cut(s)	213, 459, 645, 1035
Tru9I	TTAA	4 cut(s)	213, 459, 645, 1035
TseI	GCWGC	1 cut(s)	116
TspDTI	ATGAA	5 cut(s)	348, 373, 431, 459, 527
TspGWI	ACGGA	2 cut(s)	381, 615
XapI	RAATTY	2 cut(s)	251, 295
XcmI	CCANNNNNNNNNTGG	1 cut(s)	586
XmiI	GTMKAC	1 cut(s)	184
XmnI	GAANNNNTTC	1 cut(s)	339
XspI	CTAG	2 cut(s)	272, 486
Zsp2I	ATGCAT	2 cut(s)	754, 839

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.