MD05G1336800.v1.1

Cysteine-rich receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Reverse (-)
45864134 .. 45867292
3159 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1336800.v1.1.491

Sequence Viewer

Length: 1971 bp
ATGCCAGCAATGGATTCCTCAAGATTTCTATCCTGCCTCTTTCCCATTCTGTTTCTCATGATTAATCAAGCCCTTGGTCAAAATTGCATAGACGGAAAAGGAAACTATACCACCAATAGTACCTATCAGACAAACCTCAACCGCCTCCTCTCCTCCCTGCCCTCCGACGAAAACGGCAACGGGTATGGCTTTTACAATGCATCCTATCGCCTAAACTCGTCGAACGAGCACATTTATGCAATCGGACTTTGTAGAGGAGATGTCAAGGCGGAAGATTGCCGTAGCTGCCTAAATAATTCCCGATATGCTCTCCCTCAGAGTTGCCCTAATCGGAAGGAAGCAATTGGTTGGTATGATGACAATTGCATGTTACGCTACTCAAACCGCTCCATCTATGGCGTCATGGAAACTGAGCCTTCTCCCGCTTATTATAACATTAATAACGTATCGTCGTCCGACCTGGATGGATTCAACCAACAGCTGAGGAAGCTACTGGAAAGCATAAGAAGTGAAGCTGCAGCTGGCGGTTCTCTTCGGAAATTTGCATTCGGAAACACAAGTGCCCCATCCTTCCAAACAATATTTGCACTAGCGCAATGCACGCCAGACATATCAGAGCAACTTTGCAGTGATTGCTTAGTTGGGGCTTTTGCAGATATCTCCTCTATTTACGGGAAAGTAGGTGGGGGAGTTAATAAACCTAGCTGTAAGTTTAGATTCGATCTTTACCCCTTCTATGACCCTACAACTGTCAAACAACTGCCATCTCCGCCACCAATAACACCACCAATACATTCTCCACCACCATCAACCAATACCACAAACACTTCACAAGGATCGAAGAGCAGCAAATCTCGGACTGTCATCATTATTGTTGTGTCAATTATTGCTTCTTTGGTATTAGCAATGTTCATGGGCATTTGTCTAAGAACGAAGACATGGATGAAATTGGAAGTGCAGAATCCTTGCAATTCAATTTTGACACCATTAGAATTGGCCACAGATGACTTTTCTGAAGCCAATAAACTAGGACAAGGGGGATTTGGTTCTGTTTACAAGGGTAGGTTATTCAATGGAGAAGAAATAGCAGTGAAAAGGCTCTCCGTAAATTCTGGACAAGGAGATTTGGAGTTTAAAAATGAGGTCTTGTTAGTGGCAAAGCTTCAACACCGAAACTTAGTTAGGCTCTTGGGTTTCTGCTTGGAAGGAGTTGAAAGGCTTCTTATTTATGAGTTTGTCCCTAATGCAAGTCTGGACCACATCATATTTGACCCAATCAAGCGTGCACAACTAGATTGGGATAGGCGCTACAAAATCATAGTAGGCATTACTCGAGGGCTCATTTACCTTCATGAGGATTCACGGCTTAGAATTATCCATCGTGATCTCAAAGCTAGTAATATCTTGATAGATGAAGAAATGACTCCCAAGATATCAGATTTTGGCATGGCAAAATTGTTTGGGGTTGATCAAACACAAGGCAATACCAGTCGAATTGTGGGGACCTATGGATATATGGCTCCAGAATATGCGATGCATGGGCACTTTTCTGTTAATGGACAGAAAAATAATTCCTTTCGTCATGGCGAGAACATGGAGGATCTTCTAAGCTACGCATGGAAATGTTGGAAGGAAGGGACAGCTTCAAATCTAATAGATCCCGCGTTGACGAACGGTTCAAGAAATGAAATAATGAGATGCATCCATATTGGGTTGCTATGTGTGCAAGAAAATATACCCGATAGGCCAACCATGAATGCTATTGTTCTAATGCTTAACAGTTATTCAGTCACTCTTCCAGTACCCTCACAACCAGCATTTTTCAGAGATAGTAACGTTGGATCTGACATGACTTTGGGATGGAAGAATAGTTCGGAGGTGATTACAACCGGGTCGGATCGATCCAATGGCAACTCTGTCAAAGCACCAGAAAATGAGGTTTCATTGATCACTGAAGTATATCCTAGATAG

Protein Analysis

657

Amino Acids

72.81

Weight (kDa)

6.8

Isoelectric Point (pI)

46.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stress-antifung PF01657 29 - 129 4.6e-25 Salt stress response/antifungal
Stress-antifung PF01657 153 - 241 1.3e-08 Salt stress response/antifungal
Pkinase PF00069 338 - 511 6.1e-36 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 340 - 590 4.7e-35 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000086)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21230 AT4G21400 AT4G21400 AT4G21400 AT4G21400 AT4G21400 AT4G21400 AT4G21400 AT4G21400 AT4G21410 AT4G21410 AT4G21410 AT4G38830
fragaria_vesca FvH4_2g29861 FvH4_2g29861 FvH4_2g29870 FvH4_2g29870 FvH4_2g29870 FvH4_2g29871 FvH4_2g29871 FvH4_2g29875 FvH4_2g29878 FvH4_3g02833 FvH4_3g02833 FvH4_3g02834 FvH4_3g02870 FvH4_3g19870 FvH4_3g19870 FvH4_3g19870 FvH4_3g19870 FvH4_3g20010
malus_domestica MD00G1101400.v1.1 MD00G1101700.v1.1 MD01G1027900.v1.1 MD02G1101400.v1.1 MD05G1336800.v1.1 MD05G1337000.v1.1 MD05G1337300.v1.1 MD05G1337400.v1.1 MD05G1337500.v1.1 MD07G1014000.v1.1 MD08G1139800.v1.1 MD08G1139900.v1.1 MD08G1140000.v1.1 MD08G1140100.v1.1 MD08G1140200.v1.1 MD08G1140400.v1.1 MD10G1312200.v1.1 MD10G1312500.v1.1 MD15G1117400.v1.1
prunus_persica Prupe.1G174500_v2.0.a1 Prupe.1G468600_v2.0.a1 Prupe.1G469000_v2.0.a1 Prupe.1G469100_v2.0.a1 Prupe.1G469200_v2.0.a1 Prupe.1G469300_v2.0.a1 Prupe.4G027900_v2.0.a1 Prupe.4G028000_v2.0.a1 Prupe.4G028100_v2.0.a1 Prupe.4G028100_v2.0.a1 Prupe.4G028200_v2.0.a1 Prupe.4G028600_v2.0.a1 Prupe.4G028700_v2.0.a1 Prupe.4G028700_v2.0.a1 Prupe.4G028700_v2.0.a1 Prupe.4G028700_v2.0.a1 Prupe.4G028800_v2.0.a1 Prupe.4G100700_v2.0.a1 Prupe.6G183400_v2.0.a1 Prupe.6G183500_v2.0.a1 Prupe.6G183600_v2.0.a1 Prupe.6G184100_v2.0.a1 Prupe.6G184400_v2.0.a1 Prupe.6G184500_v2.0.a1
pyrus_communis pycom01g05620 pycom01g05630 pycom05g30820 pycom05g30840 pycom05g30860 pycom05g30880 pycom05g30890 pycom05g30900 pycom08g11780 pycom08g11850 pycom10g26340 pycom10g26350 pycom10g26360 pycom10g26400 pycom10g26410 pycom15g10580
rosa_chinensis RchiOBHm_Chr1g0313011 RchiOBHm_Chr1g0319461 RchiOBHm_Chr1g0319511 RchiOBHm_Chr2g0114611 RchiOBHm_Chr2g0114631 RchiOBHm_Chr2g0114691 RchiOBHm_Chr2g0114741 RchiOBHm_Chr2g0114751 RchiOBHm_Chr2g0114781 RchiOBHm_Chr2g0114791 RchiOBHm_Chr3g0494511 RchiOBHm_Chr3g0494521 RchiOBHm_Chr4g0413731 RchiOBHm_Chr5g0004271 RchiOBHm_Chr5g0004291 RchiOBHm_Chr5g0004301 RchiOBHm_Chr5g0004341 RchiOBHm_Chr5g0004351 RchiOBHm_Chr5g0004371 RchiOBHm_Chr5g0033301 RchiOBHm_Chr5g0033311 RchiOBHm_Chr5g0033341 RchiOBHm_Chr5g0033361 RchiOBHm_Chr5g0033391 RchiOBHm_Chr5g0033401 RchiOBHm_Chr5g0033431 RchiOBHm_Chr5g0033451 RchiOBHm_Chr5g0033461 RchiOBHm_Chr5g0033531 RchiOBHm_Chr5g0033541 RchiOBHm_Chr5g0033711 RchiOBHm_Chr5g0033851 RchiOBHm_Chr5g0033861 RchiOBHm_Chr5g0033871 RchiOBHm_Chr5g0054051 RchiOBHm_Chr5g0069631 RchiOBHm_Chr6g0265231 RchiOBHm_Chr6g0298941 RchiOBHm_Chr6g0298951 RchiOBHm_Chr6g0299001 RchiOBHm_Chr6g0299011 RchiOBHm_Chr6g0299021
rosa_laevigata RLG00000008198 RLG00000010335 RLG00000011468 RLG00000011471 RLG00000014070 RLG00000014071 RLG00000018116 RLG00000018125 RLG00000031219 RLG00000031220 RLG00000031221 RLG00000031222 RLG00000031224 RLG00000033469 RLG00000033471 RLG00000033473 RLG00000033476 RLG00000033477 RLG00000033479 RLG00000033480 RLG00000033483 RLG00000035638
rosa_multiflora Rmu_co8063382.1_g000001 Rmu_co8095246.1_g000001 Rmu_sc0000370.1_g000009 Rmu_sc0000370.1_g000019 Rmu_sc0000371.1_g000023 Rmu_sc0000371.1_g000036 Rmu_sc0000433.1_g000023 Rmu_sc0000433.1_g000024 Rmu_sc0000545.1_g000004 Rmu_sc0000981.1_g000001 Rmu_sc0001150.1_g000032 Rmu_sc0001242.1_g000004 Rmu_sc0001242.1_g000008 Rmu_sc0001522.1_g000035 Rmu_sc0002206.1_g000008 Rmu_sc0002206.1_g000021 Rmu_sc0002453.1_g000008 Rmu_sc0002453.1_g000018 Rmu_sc0003286.1_g000007 Rmu_sc0003286.1_g000013 Rmu_sc0004133.1_g000005 Rmu_sc0005660.1_g000005 Rmu_sc0005660.1_g000019 Rmu_sc0005660.1_g000025 Rmu_sc0005870.1_g000017 Rmu_sc0005870.1_g000022 Rmu_sc0006083.1_g000003 Rmu_sc0008092.1_g000016 Rmu_sc0008210.1_g000007 Rmu_sc0009715.1_g000001 Rmu_sc0011893.1_g000003 Rmu_sc0011893.1_g000004 Rmu_sc0015325.1_g000002 Rmu_sc0029922.1_g000001 Rmu_ssc0000359.1_g000017 Rmu_ssc0000424.1_g000009
rosa_roxburghii Rroxscaffold_175G00432170 Rroxscaffold_1G00022110 Rroxscaffold_1G00046520 Rroxscaffold_1G00046550 Rroxscaffold_1G00046600 Rroxscaffold_1G00046650 Rroxscaffold_1G00046680 Rroxscaffold_1G00071130 Rroxscaffold_1G00071380 Rroxscaffold_1G00071410 Rroxscaffold_2G00130310 Rroxscaffold_2G00130320 Rroxscaffold_2G00130330 Rroxscaffold_4G00328340 Rroxscaffold_4G00328360 Rroxscaffold_4G00328370 Rroxscaffold_5G00357650 Rroxscaffold_7G00156890 Rroxscaffold_7G00169080 Rroxscaffold_7G00169090 Rroxscaffold_7G00169100 Rroxscaffold_7G00169170 Rroxscaffold_7G00169190
rosa_rugosa Rorug01G0027900 Rorug01G0130600 Rorug02G0190700 Rorug04G0411000 Rorug04G0411000 Rorug04G0411200 Rorug04G0411300 Rorug04G0411400 Rorug04G0411500 Rorug05G0139300 Rorug05G0139500 Rorug05G0139800 Rorug05G0139900 Rorug05G0187000 Rorug05G0187000 Rorug05G0187000 Rorug05G0398900 Rorug06G0034600 Rorug06G0283900 Rorug06G0284000 Rorug06G0284100 Rorug06G0394700
rosa_samantha Rh1BG036800 Rh1CG040700 Rh1CG040800 Rh1DG000200 Rh1DG028900 Rh1DG090600 Rh2AG248900 Rh2CG252600 Rh2CG253100 Rh2CG253500 Rh2CG253600 Rh2CG253900 Rh4DG177700 Rh5CG041500 Rh5CG041700 Rh5CG042100 Rh5CG260400 Rh5CG260500 Rh5CG260600 Rh5CG260900 Rh5CG261100 Rh5DG037300 Rh5DG037400 Rh5DG037500 Rh5DG236800 Rh5DG236900 Rh5DG237100 Rh5DG237500 Rh5DG237600 Rh5DG237700 Rh5DG241100 Rh6CG134500 Rh6CG409700 Rh6CG409800 Rh6CG410100 Rh6DG120900 Rh6DG396500 Rh6DG396600 Rh6DG396700 Rh6DG514400
rosa_wichuraiana Rw1G003200 Rw1G003210 Rw1G003230 Rw2G019350 Rw4G015240 Rw5G003500 Rw5G003520 Rw5G003530 Rw5G003690 Rw5G003720 Rw5G003730 Rw5G021090 Rw5G021100 Rw5G021110 Rw5G021120 Rw5G021130 Rw6G011870 Rw6G034630 Rw7G038700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 432
AccBSI CCGCTC 1 cut(s) 387
AccII CGCG 1 cut(s) 1664
AciI CCGC 7 cut(s) 142, 269, 385, 423, 525, 770, 1662
AclI AACGTT 1 cut(s) 1836
AclWI GGATC 6 cut(s) 844, 1608, 1652, 1849, 1896, 1905
AcoI YGGCCR 1 cut(s) 996
AcsI RAATTY 2 cut(s) 539, 1108
AcuI CTGAAG 1 cut(s) 1035
AcyI GRCGYC 1 cut(s) 399
AfaI GTAC 2 cut(s) 121, 1803
AfiI CCNNNNNNNGG 1 cut(s) 1354
AgsI TTSAA 7 cut(s) 472, 975, 1072, 1166, 1214, 1647, 1680
AjnI CCWGG 1 cut(s) 459
AloI GAACNNNNNNTCC 2 cut(s) 1855, 1887
Alw21I GWGCWC 2 cut(s) 231, 1288
Alw44I GTGCAC 1 cut(s) 1284
AlwI GGATC 6 cut(s) 844, 1608, 1652, 1849, 1896, 1905
Ama87I CYCGRG 1 cut(s) 1332
AoxI GGCC 2 cut(s) 996, 1745
ApaLI GTGCAC 1 cut(s) 1284
ApeKI GCWGC 4 cut(s) 285, 515, 518, 846
ApoI RAATTY 2 cut(s) 539, 1108
AseI ATTAAT 2 cut(s) 63, 438
Asp700I GAANNNNTTC 1 cut(s) 1218
AspLEI GCGC 2 cut(s) 595, 1308
AspS9I GGNCC 2 cut(s) 1255, 1503
AsuC2I CCSGG 1 cut(s) 1891
AsuHPI GGTGA 1 cut(s) 1891
AvaI CYCGRG 1 cut(s) 1332
AvaII GGWCC 2 cut(s) 1255, 1503
BaeGI GKGCMC 3 cut(s) 565, 1288, 1545
BalI TGGCCA 1 cut(s) 998
BanII GRGCYC 1 cut(s) 1341
BbsI GAAGAC 1 cut(s) 941
Bbv12I GWGCWC 2 cut(s) 231, 1288
BbvCI CCTCAGC 1 cut(s) 482
BbvI GCAGC 4 cut(s) 272, 502, 530, 858
BccI CCATC 7 cut(s) 398, 458, 574, 772, 814, 1386, 1854
BceAI ACGGC 3 cut(s) 190, 264, 1379
BciT130I CCWGG 1 cut(s) 461
BclI TGATCA 2 cut(s) 1468, 1947
BcnI CCSGG 1 cut(s) 1891
BfaI CTAG 6 cut(s) 590, 702, 1028, 1292, 1395, 1965
BfmI CTRYAG 1 cut(s) 516
BfoI RGCGCY 1 cut(s) 1309
BisI GCNGC 4 cut(s) 286, 516, 519, 847
BlsI GCNGC 4 cut(s) 287, 517, 520, 848
Bme1390I CCNGG 2 cut(s) 461, 1891
Bme18I GGWCC 2 cut(s) 1255, 1503
BmeT110I CYCGRG 1 cut(s) 1332
BmgT120I GGNCC 2 cut(s) 1255, 1503
BmiI GGNNCC 2 cut(s) 1504, 1521
BmrFI CCNGG 2 cut(s) 461, 1891
BmsI GCATC 4 cut(s) 209, 1524, 1688, 1710
BpiI GAAGAC 1 cut(s) 941
BpmI CTGGAG 1 cut(s) 1506
Bpu10I CCTNAGC 1 cut(s) 482
BpuEI CTTGAG 1 cut(s) 4
BpuMI CCSGG 1 cut(s) 1891
Bsa29I ATCGAT 1 cut(s) 1900
BsaBI GATNNNNATC 1 cut(s) 28
BsaHI GRCGYC 1 cut(s) 399
BsaJI CCNNGG 1 cut(s) 73
Bsc4I CCNNNNNNNGG 1 cut(s) 1354
Bse1I ACTGG 3 cut(s) 498, 1488, 1799
Bse3DI GCAATG 3 cut(s) 15, 602, 912
Bse8I GATNNNNATC 1 cut(s) 28
BseBI CCWGG 1 cut(s) 461
BseCI ATCGAT 1 cut(s) 1900
BseDI CCNNGG 1 cut(s) 73
BseGI GGATG 6 cut(s) 200, 469, 566, 948, 1701, 1865
BseJI GATNNNNATC 1 cut(s) 28
BseLI CCNNNNNNNGG 1 cut(s) 1354
BseMI GCAATG 3 cut(s) 15, 602, 912
BseMII CTCAG 3 cut(s) 329, 402, 473
BseNI ACTGG 3 cut(s) 498, 1488, 1799
BseRI GAGGAG 4 cut(s) 137, 142, 270, 652
BseSI GKGCMC 3 cut(s) 565, 1288, 1545
BseXI GCAGC 4 cut(s) 272, 502, 530, 858
BsgI GTGCAG 1 cut(s) 977
Bsh1236I CGCG 1 cut(s) 1664
BshFI GGCC 2 cut(s) 998, 1747
BshVI ATCGAT 1 cut(s) 1900
BsiHKAI GWGCWC 2 cut(s) 231, 1288
BsiHKCI CYCGRG 1 cut(s) 1332
BsiSI CCGG 1 cut(s) 1890
BslFI GGGAC 3 cut(s) 1223, 1516, 1651
BslI CCNNNNNNNGG 1 cut(s) 1354
BsmFI GGGAC 3 cut(s) 1223, 1516, 1651
BsmI GAATGC 2 cut(s) 545, 1762
BsnI GGCC 2 cut(s) 998, 1747
BsoBI CYCGRG 1 cut(s) 1332
Bsp1286I GDGCHC 5 cut(s) 231, 565, 1288, 1341, 1545
BspACI CCGC 7 cut(s) 142, 269, 385, 423, 525, 770, 1662
BspANI GGCC 2 cut(s) 998, 1747
BspCNI CTCAG 3 cut(s) 328, 403, 474
BspDI ATCGAT 1 cut(s) 1900
BspFNI CGCG 1 cut(s) 1664
BspHI TCATGA 2 cut(s) 57, 1351
BspLI GGNNCC 2 cut(s) 1504, 1521
BspMAI CTGCAG 1 cut(s) 520
BspPI GGATC 6 cut(s) 844, 1608, 1652, 1849, 1896, 1905
BspQI GCTCTTC 1 cut(s) 836
BsrBI CCGCTC 1 cut(s) 387
BsrDI GCAATG 3 cut(s) 15, 602, 912
BsrI ACTGG 3 cut(s) 498, 1488, 1799
BssECI CCNNGG 1 cut(s) 73
BssNI GRCGYC 1 cut(s) 399
BssT1I CCWWGG 1 cut(s) 73
Bst2UI CCWGG 1 cut(s) 461
Bst4CI ACNGT 4 cut(s) 751, 862, 1676, 1781
Bst6I CTCTTC 3 cut(s) 537, 836, 1800
BstACI GRCGYC 1 cut(s) 399
BstAPI GCANNNNNTGC 1 cut(s) 633
BstC8I GCNNGC 4 cut(s) 6, 523, 602, 1284
BstDEI CTNAG 8 cut(s) 315, 411, 482, 637, 926, 1177, 1367, 1607
BstENI CCTNNNNNAGG 1 cut(s) 1352
BstF5I GGATG 6 cut(s) 200, 469, 566, 948, 1701, 1865
BstFNI CGCG 1 cut(s) 1664
BstH2I RGCGCY 1 cut(s) 1309
BstHHI GCGC 2 cut(s) 595, 1308
BstMWI GCNNNNNNNGC 7 cut(s) 285, 372, 487, 601, 633, 769, 1723
BstNI CCWGG 1 cut(s) 461
BstNSI RCATGY 1 cut(s) 370
BstSCI CCNGG 2 cut(s) 459, 1889
BstSFI CTRYAG 1 cut(s) 516
BstSLI GKGCMC 3 cut(s) 565, 1288, 1545
BstUI CGCG 1 cut(s) 1664
BstV1I GCAGC 4 cut(s) 272, 502, 530, 858
BstV2I GAAGAC 1 cut(s) 941
BstX2I RGATCY 3 cut(s) 1600, 1657, 1841
BstYI RGATCY 3 cut(s) 1600, 1657, 1841
Bsu15I ATCGAT 1 cut(s) 1900
BsuRI GGCC 2 cut(s) 998, 1747
BsuTUI ATCGAT 1 cut(s) 1900
BtgZI GCGATG 1 cut(s) 1547
BtsCI GGATG 6 cut(s) 200, 469, 566, 948, 1701, 1865
BtsI GCAGTG 2 cut(s) 634, 1095
BtsIMutI CAGTG 3 cut(s) 634, 1095, 1950
Cac8I GCNNGC 4 cut(s) 6, 523, 602, 1284
CciI TCATGA 2 cut(s) 57, 1351
CfoI GCGC 2 cut(s) 595, 1308
Cfr13I GGNCC 2 cut(s) 1255, 1503
ClaI ATCGAT 1 cut(s) 1900
CseI GACGC 1 cut(s) 388
Csp6I GTAC 2 cut(s) 120, 1802
CviQI GTAC 2 cut(s) 120, 1802
DdeI CTNAG 8 cut(s) 315, 411, 482, 637, 926, 1177, 1367, 1607
DraI TTTAAA 1 cut(s) 1135
EaeI YGGCCR 1 cut(s) 996
Eam1104I CTCTTC 3 cut(s) 537, 836, 1800
EarI CTCTTC 3 cut(s) 537, 836, 1800
EciI GGCGGA 2 cut(s) 284, 759
Eco130I CCWWGG 1 cut(s) 73
Eco24I GRGCYC 1 cut(s) 1341
Eco32I GATATC 2 cut(s) 658, 1434
Eco47I GGWCC 2 cut(s) 1255, 1503
Eco57I CTGAAG 1 cut(s) 1035
Eco88I CYCGRG 1 cut(s) 1332
EcoNI CCTNNNNNAGG 1 cut(s) 1352
EcoO109I RGGNCCY 1 cut(s) 1503
EcoRII CCWGG 1 cut(s) 459
EcoRV GATATC 2 cut(s) 658, 1434
EcoT14I CCWWGG 1 cut(s) 73
EcoT22I ATGCAT 3 cut(s) 202, 1539, 1703
EcoT38I GRGCYC 1 cut(s) 1341
ErhI CCWWGG 1 cut(s) 73
FaqI GGGAC 3 cut(s) 1223, 1516, 1651
FauI CCCGC 2 cut(s) 430, 1669
FbaI TGATCA 2 cut(s) 1468, 1947
Fnu4HI GCNGC 4 cut(s) 286, 516, 519, 847
FokI GGATG 6 cut(s) 187, 476, 553, 955, 1688, 1872
FriOI GRGCYC 1 cut(s) 1341
Fsp4HI GCNGC 4 cut(s) 286, 516, 519, 847
FspBI CTAG 6 cut(s) 590, 702, 1028, 1292, 1395, 1965
GlaI GCGC 2 cut(s) 594, 1307
GluI GCNGC 4 cut(s) 286, 516, 519, 847
GsuI CTGGAG 1 cut(s) 1506
HaeII RGCGCY 1 cut(s) 1309
HaeIII GGCC 2 cut(s) 998, 1747
HapII CCGG 1 cut(s) 1890
HgaI GACGC 1 cut(s) 388
HhaI GCGC 2 cut(s) 595, 1308
Hin1I GRCGYC 1 cut(s) 399
Hin6I GCGC 2 cut(s) 593, 1306
HinP1I GCGC 2 cut(s) 593, 1306
HincII GTYRAC 1 cut(s) 1668
HindII GTYRAC 1 cut(s) 1668
HindIII AAGCTT 1 cut(s) 1160
HinfI GANTC 6 cut(s) 14, 468, 717, 961, 1358, 1423
HpaII CCGG 1 cut(s) 1890
HphI GGTGA 1 cut(s) 1891
Hpy166II GTNNAC 3 cut(s) 1054, 1286, 1668
Hpy8I GTNNAC 3 cut(s) 1054, 1286, 1668
Hpy99I CGWCG 3 cut(s) 170, 223, 454
HpyAV CCTTC 8 cut(s) 328, 426, 580, 742, 1199, 1358, 1624, 1628
HpyCH4III ACNGT 4 cut(s) 751, 862, 1676, 1781
HpyCH4IV ACGT 2 cut(s) 444, 1836
HpyF10VI GCNNNNNNNGC 7 cut(s) 285, 372, 487, 601, 633, 769, 1723
HpyF3I CTNAG 8 cut(s) 315, 411, 482, 637, 926, 1177, 1367, 1607
HpySE526I ACGT 2 cut(s) 444, 1836
Hsp92I GRCGYC 1 cut(s) 399
HspAI GCGC 2 cut(s) 593, 1306
Ksp22I TGATCA 2 cut(s) 1468, 1947
LguI GCTCTTC 1 cut(s) 836
LmnI GCTCC 2 cut(s) 392, 1525
Lsp1109I GCAGC 4 cut(s) 272, 502, 530, 858
LweI GCATC 4 cut(s) 209, 1524, 1688, 1710
MaeI CTAG 6 cut(s) 590, 702, 1028, 1292, 1395, 1965
MaeII ACGT 2 cut(s) 444, 1836
MaeIII GTNAC 3 cut(s) 369, 1789, 1832
MbiI CCGCTC 1 cut(s) 387
MboII GAAGA 9 cut(s) 284, 524, 853, 946, 1091, 1427, 1595, 1787, 1876
MfeI CAATTG 2 cut(s) 342, 361
MflI RGATCY 3 cut(s) 1600, 1657, 1841
MhlI GDGCHC 5 cut(s) 231, 565, 1288, 1341, 1545
MlsI TGGCCA 1 cut(s) 998
MluNI TGGCCA 1 cut(s) 998
MlyI GAGTC 1 cut(s) 1417
MmeI TCCRAC 5 cut(s) 189, 480, 1607, 1819, 1875
Mox20I TGGCCA 1 cut(s) 998
Mph1103I ATGCAT 3 cut(s) 202, 1539, 1703
MroXI GAANNNNTTC 1 cut(s) 1218
MscI TGGCCA 1 cut(s) 998
MseI TTAA 6 cut(s) 63, 438, 693, 1134, 1554, 1776
MslI CAYNNNNRTG 2 cut(s) 234, 1621
Msp20I TGGCCA 1 cut(s) 998
MspA1I CMGCKG 2 cut(s) 481, 521
MspI CCGG 1 cut(s) 1890
MspR9I CCNGG 2 cut(s) 461, 1891
MunI CAATTG 2 cut(s) 342, 361
Mva1269I GAATGC 2 cut(s) 545, 1762
MvaI CCWGG 1 cut(s) 461
MvnI CGCG 1 cut(s) 1664
MwoI GCNNNNNNNGC 7 cut(s) 285, 372, 487, 601, 633, 769, 1723
NciI CCSGG 1 cut(s) 1891
NlaIV GGNNCC 2 cut(s) 1504, 1521
NmuCI GTSAC 1 cut(s) 1789
NsiI ATGCAT 3 cut(s) 202, 1539, 1703
NspI RCATGY 1 cut(s) 370
PaeR7I CTCGAG 1 cut(s) 1332
PagI TCATGA 2 cut(s) 57, 1351
PciSI GCTCTTC 1 cut(s) 836
PctI GAATGC 2 cut(s) 545, 1762
PdmI GAANNNNTTC 1 cut(s) 1218
PfeI GAWTC 5 cut(s) 14, 468, 717, 961, 1358
PkrI GCNGC 4 cut(s) 287, 517, 520, 848
PleI GAGTC 1 cut(s) 1417
PpsI GAGTC 1 cut(s) 1417
PpuMI RGGWCCY 1 cut(s) 1503
PshBI ATTAAT 2 cut(s) 63, 438
PsiI TTATAA 1 cut(s) 432
Psp1406I AACGTT 1 cut(s) 1836
Psp5II RGGWCCY 1 cut(s) 1503
Psp6I CCWGG 1 cut(s) 459
PspGI CCWGG 1 cut(s) 459
PspN4I GGNNCC 2 cut(s) 1504, 1521
PspPI GGNCC 2 cut(s) 1255, 1503
PspPPI RGGWCCY 1 cut(s) 1503
PspXI VCTCGAGB 1 cut(s) 1332
PstI CTGCAG 1 cut(s) 520
PsuI RGATCY 3 cut(s) 1600, 1657, 1841
PvuII CAGCTG 2 cut(s) 481, 521
RsaI GTAC 2 cut(s) 121, 1803
RsaNI GTAC 2 cut(s) 120, 1802
RseI CAYNNNNRTG 2 cut(s) 234, 1621
SapI GCTCTTC 1 cut(s) 836
SaqAI TTAA 6 cut(s) 63, 438, 693, 1134, 1554, 1776
SatI GCNGC 4 cut(s) 286, 516, 519, 847
Sau96I GGNCC 2 cut(s) 1255, 1503
SchI GAGTC 1 cut(s) 1417
ScrFI CCNGG 2 cut(s) 461, 1891
SduI GDGCHC 5 cut(s) 231, 565, 1288, 1341, 1545
SfaNI GCATC 4 cut(s) 209, 1524, 1688, 1710
SfcI CTRYAG 1 cut(s) 516
Sfr274I CTCGAG 1 cut(s) 1332
SinI GGWCC 2 cut(s) 1255, 1503
SlaI CTCGAG 1 cut(s) 1332
SmiMI CAYNNNNRTG 2 cut(s) 234, 1621
SmlI CTYRAG 2 cut(s) 19, 1332
SmoI CTYRAG 2 cut(s) 19, 1332
SsiI CCGC 7 cut(s) 142, 269, 385, 423, 525, 770, 1662
SspI AATATT 1 cut(s) 582
SspMI CTAG 6 cut(s) 590, 702, 1028, 1292, 1395, 1965
StyD4I CCNGG 2 cut(s) 459, 1889
StyI CCWWGG 1 cut(s) 73
TaaI ACNGT 4 cut(s) 751, 862, 1676, 1781
TaiI ACGT 2 cut(s) 447, 1839
TaqI TCGA 6 cut(s) 221, 720, 839, 1333, 1492, 1900
TfiI GAWTC 5 cut(s) 14, 468, 717, 961, 1358
Tru1I TTAA 6 cut(s) 63, 438, 693, 1134, 1554, 1776
Tru9I TTAA 6 cut(s) 63, 438, 693, 1134, 1554, 1776
TscAI CASTG 3 cut(s) 634, 1095, 1957
TseFI GTSAC 1 cut(s) 1789
TseI GCWGC 4 cut(s) 285, 515, 518, 846
Tsp45I GTSAC 1 cut(s) 1789
TspDTI ATGAA 7 cut(s) 901, 959, 1340, 1428, 1701, 1769, 1932
TspGWI ACGGA 2 cut(s) 108, 1093
TspRI CASTG 3 cut(s) 634, 1095, 1957
VneI GTGCAC 1 cut(s) 1284
VpaK11BI GGWCC 2 cut(s) 1255, 1503
VspI ATTAAT 2 cut(s) 63, 438
XagI CCTNNNNNAGG 1 cut(s) 1352
XapI RAATTY 2 cut(s) 539, 1108
XceI RCATGY 1 cut(s) 370
XcmI CCANNNNNNNNNTGG 1 cut(s) 1495
XhoI CTCGAG 1 cut(s) 1332
XmnI GAANNNNTTC 1 cut(s) 1218
XspI CTAG 6 cut(s) 590, 702, 1028, 1292, 1395, 1965
Zsp2I ATGCAT 3 cut(s) 202, 1539, 1703
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.