Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000086

Physical Location & Seq

Genomic Coordinates Forward (+)

793406 .. 799305

Gene Structure 5900 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00156890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2256 bp

ATGATGCTCAGCAGCACAGTAACTCAAACTGAAGGTCATGATCATCCCCCTTTTCTGTACACCGTATGTTATGGCGACGGGGGTAATGACAGTGCTAATAGCATCTACCACACCAACCTCAATCAGTGTCTCGCAGATCTGCCCTCCACTGGCAATGGTTATGGGTTCTACAGCACCTCATCAGGCCAAAACCCTAACAAAGCCTACGCAATTGGGCTTTGTAGAGGCGATGTTAAGCCCTATGCCTGCAGGAAATGCCTCGATGATGTTAGAGATCTTCTCATAGAGGCGTGTCCTTCTCAGATAGAAGCGATTGGGTGGTACCAGAACTGCATGCTTCGGTTCTCGAACCGCTCCCTCCACGGCTCCATGGAAGTCGTTCCTGCCTTCTCTCTGTGGAACGGAGAGAGCCTATTGTCCGGCGATGACGTGGCTGCCCGGTTCAACCGGAAGCTGAGGAACTTACTCAAAACCCTAAGTATTGAGGCCGCAGGCGGCGGCGATCTTAGCAAGTTTGCAGCAGGAAGTGCTAGCTTTAGGGTTGCTCGGAATTCCAATCAATTGAGGATATATGCGCTTGTCCAATGCACACCCGATTTGTCGGAGACAGACTGCAAAGGGTGCTTGCTTCATTCCTCTGGTCACATCCCAAAATGCTGTCATGGGAAGGACACCGGGAGGCTTGTTACACCTAGCTGTAATTTGAGGTTTGAGCTGTCTTCCTTCTTTGACAAAGCTGCTACTGCAGTCTCTAATGGCTCTCCTCCTCCAATCTCTGCCAATACCAGAAGTATTTCACAAGGGTGTGAGGTGTGGAGAGGGGAGATCGAAGCTGCTGTCGGGGTTCTGGTGTGTCCCTCGATGGTCTGGTCGGCGACGCGGGTTGGTGGAGAGGTTTTGGAGGCTGTGGGGTGGTGCCTTGAATCTGTTCAGATCAGTCCGATCTGGGTTAGGTCCTCTCGATCTGATCCATGGCGGACTGTTGCGGTCTGGGGCCGACCGGGCCGCGCGGACTTGAGGAGAAATATGTATGGTACTGGGGAAGAAGATGAAGAGTTGGAGAGTGTTGACTTTTCATTGAGGATTCGTTTTGATGCTGTCAAATCTGCCACGGGTAACTTTGATGAAAGAAGAAAACTGGGACAAGGCGGATTTGGTCCTGTTTACAAGGGTCATCTGGAAGGGCGAGATATAGCCGTGAAAAGACTCTCAACAGAACAACGACAAGGAGATGTACAGTTTTCAAATGAAGTCGCTGTTTTGGGCAACCTTCAACATGACAATTTAGTCAAGCTCCTACATTTCTGTGTGGAAGGAATTGAAAGGGTTCTTGTATATGAGTTTGTCCCAAATGGAAGTCTTGATCGCCTCATATTTGATAAAAACGAGGGCGAAGGTTTGGATTGGAAAAGACGCTACAACATCATAGTTGGCACTGCACGAGGAATCTGTTACCTTCATCACAATGCTTCTCCTACATTTATTCATCGTGATGTAAAAACCAGCAACATATTAGTAGATGCAGTATGGAATCCCAAAATTTCTGATCTGGGCCTGGCAAAGTTGTTTTCTGAAGATCGAATGGAACAATATACTGAGTACCCTGCTGGTACCTGCGGTTATATGGCACCGGAGTATTTTAGAGTTGGTCGTTACTCTGTTAAGTCCGATGTCTACGCCTTTGGTGTAGTGATATTGGAGATTGTGTGTGGAAAAAAAAATTGTTCTTTCCGTTATGGAGAAAATGGAGCGGGTCTTGTAGACTATGCTTGGGAAAATTGGGGGAATGAAGAGAGGGTGTCAAATTTAATAGATCCGATGTTGAGGACTACTGTTTCAGACAGTGAAATAAGGAGATGCCTTAAAATTGCGTTACTTTGCCTGCAAGACAATGAAGATAAGAGGCCAACCATGGTTAAAGTTGTTGACATGCTTATAAGTAACCGTGATACTGATACTGTGCCAGATCCGGTACGCCGAGAACAAGAACCAGTCCTTCCAGTTCTAGAACCCCAACAACAAGCACCAGTGGAAAATAATGCTTATCAAATCTTGGGAATGCTAGTCAGTGCTTCTTCCTCAATCGCTTCCAAGGTGTCTGAATTCTATCGGACTTGTGCTTACAGTCCTCCTAAGAATCGCCCTAGTAGACCAGGAGAAGCGGATATTTATGAGCAGGCAGTTGATTCCCTCCCCCAAACAGCAATGGGTGAACAAAAAATAATTGGGGGTGAGGACCAAATCCCCCCGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

751

Amino Acids

83.07

Weight (kDa)

5.7

Isoelectric Point (pI)

47.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	23 - 118	8e-22	Salt stress response/antifungal
Stress-antifung	PF01657	146 - 238	2e-11	Salt stress response/antifungal
Pkinase	PF00069	375 - 643	6.6e-43	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	377 - 645	3.3e-44	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21230 AT4G21400 AT4G21400 AT4G21400 AT4G21400 AT4G21400 AT4G21400 AT4G21400 AT4G21400 AT4G21410 AT4G21410 AT4G21410 AT4G38830
fragaria_vesca	FvH4_2g29861 FvH4_2g29861 FvH4_2g29870 FvH4_2g29870 FvH4_2g29870 FvH4_2g29871 FvH4_2g29871 FvH4_2g29875 FvH4_2g29878 FvH4_3g02833 FvH4_3g02833 FvH4_3g02834 FvH4_3g02870 FvH4_3g19870 FvH4_3g19870 FvH4_3g19870 FvH4_3g19870 FvH4_3g20010
malus_domestica	MD00G1101400.v1.1 MD00G1101700.v1.1 MD01G1027900.v1.1 MD02G1101400.v1.1 MD05G1336800.v1.1 MD05G1337000.v1.1 MD05G1337300.v1.1 MD05G1337400.v1.1 MD05G1337500.v1.1 MD07G1014000.v1.1 MD08G1139800.v1.1 MD08G1139900.v1.1 MD08G1140000.v1.1 MD08G1140100.v1.1 MD08G1140200.v1.1 MD08G1140400.v1.1 MD10G1312200.v1.1 MD10G1312500.v1.1 MD15G1117400.v1.1
prunus_persica	Prupe.1G174500_v2.0.a1 Prupe.1G468600_v2.0.a1 Prupe.1G469000_v2.0.a1 Prupe.1G469100_v2.0.a1 Prupe.1G469200_v2.0.a1 Prupe.1G469300_v2.0.a1 Prupe.4G027900_v2.0.a1 Prupe.4G028000_v2.0.a1 Prupe.4G028100_v2.0.a1 Prupe.4G028100_v2.0.a1 Prupe.4G028200_v2.0.a1 Prupe.4G028600_v2.0.a1 Prupe.4G028700_v2.0.a1 Prupe.4G028700_v2.0.a1 Prupe.4G028700_v2.0.a1 Prupe.4G028700_v2.0.a1 Prupe.4G028800_v2.0.a1 Prupe.4G100700_v2.0.a1 Prupe.6G183400_v2.0.a1 Prupe.6G183500_v2.0.a1 Prupe.6G183600_v2.0.a1 Prupe.6G184100_v2.0.a1 Prupe.6G184400_v2.0.a1 Prupe.6G184500_v2.0.a1
pyrus_communis	pycom01g05620 pycom01g05630 pycom05g30820 pycom05g30840 pycom05g30860 pycom05g30880 pycom05g30890 pycom05g30900 pycom08g11780 pycom08g11850 pycom10g26340 pycom10g26350 pycom10g26360 pycom10g26400 pycom10g26410 pycom15g10580
rosa_chinensis	RchiOBHm_Chr1g0313011 RchiOBHm_Chr1g0319461 RchiOBHm_Chr1g0319511 RchiOBHm_Chr2g0114611 RchiOBHm_Chr2g0114631 RchiOBHm_Chr2g0114691 RchiOBHm_Chr2g0114741 RchiOBHm_Chr2g0114751 RchiOBHm_Chr2g0114781 RchiOBHm_Chr2g0114791 RchiOBHm_Chr3g0494511 RchiOBHm_Chr3g0494521 RchiOBHm_Chr4g0413731 RchiOBHm_Chr5g0004271 RchiOBHm_Chr5g0004291 RchiOBHm_Chr5g0004301 RchiOBHm_Chr5g0004341 RchiOBHm_Chr5g0004351 RchiOBHm_Chr5g0004371 RchiOBHm_Chr5g0033301 RchiOBHm_Chr5g0033311 RchiOBHm_Chr5g0033341 RchiOBHm_Chr5g0033361 RchiOBHm_Chr5g0033391 RchiOBHm_Chr5g0033401 RchiOBHm_Chr5g0033431 RchiOBHm_Chr5g0033451 RchiOBHm_Chr5g0033461 RchiOBHm_Chr5g0033531 RchiOBHm_Chr5g0033541 RchiOBHm_Chr5g0033711 RchiOBHm_Chr5g0033851 RchiOBHm_Chr5g0033861 RchiOBHm_Chr5g0033871 RchiOBHm_Chr5g0054051 RchiOBHm_Chr5g0069631 RchiOBHm_Chr6g0265231 RchiOBHm_Chr6g0298941 RchiOBHm_Chr6g0298951 RchiOBHm_Chr6g0299001 RchiOBHm_Chr6g0299011 RchiOBHm_Chr6g0299021
rosa_laevigata	RLG00000008198 RLG00000010335 RLG00000011468 RLG00000011471 RLG00000014070 RLG00000014071 RLG00000018116 RLG00000018125 RLG00000031219 RLG00000031220 RLG00000031221 RLG00000031222 RLG00000031224 RLG00000033469 RLG00000033471 RLG00000033473 RLG00000033476 RLG00000033477 RLG00000033479 RLG00000033480 RLG00000033483 RLG00000035638
rosa_multiflora	Rmu_co8063382.1_g000001 Rmu_co8095246.1_g000001 Rmu_sc0000370.1_g000009 Rmu_sc0000370.1_g000019 Rmu_sc0000371.1_g000023 Rmu_sc0000371.1_g000036 Rmu_sc0000433.1_g000023 Rmu_sc0000433.1_g000024 Rmu_sc0000545.1_g000004 Rmu_sc0000981.1_g000001 Rmu_sc0001150.1_g000032 Rmu_sc0001242.1_g000004 Rmu_sc0001242.1_g000008 Rmu_sc0001522.1_g000035 Rmu_sc0002206.1_g000008 Rmu_sc0002206.1_g000021 Rmu_sc0002453.1_g000008 Rmu_sc0002453.1_g000018 Rmu_sc0003286.1_g000007 Rmu_sc0003286.1_g000013 Rmu_sc0004133.1_g000005 Rmu_sc0005660.1_g000005 Rmu_sc0005660.1_g000019 Rmu_sc0005660.1_g000025 Rmu_sc0005870.1_g000017 Rmu_sc0005870.1_g000022 Rmu_sc0006083.1_g000003 Rmu_sc0008092.1_g000016 Rmu_sc0008210.1_g000007 Rmu_sc0009715.1_g000001 Rmu_sc0011893.1_g000003 Rmu_sc0011893.1_g000004 Rmu_sc0015325.1_g000002 Rmu_sc0029922.1_g000001 Rmu_ssc0000359.1_g000017 Rmu_ssc0000424.1_g000009
rosa_roxburghii	Rroxscaffold_175G00432170 Rroxscaffold_1G00022110 Rroxscaffold_1G00046520 Rroxscaffold_1G00046550 Rroxscaffold_1G00046600 Rroxscaffold_1G00046650 Rroxscaffold_1G00046680 Rroxscaffold_1G00071130 Rroxscaffold_1G00071380 Rroxscaffold_1G00071410 Rroxscaffold_2G00130310 Rroxscaffold_2G00130320 Rroxscaffold_2G00130330 Rroxscaffold_4G00328340 Rroxscaffold_4G00328360 Rroxscaffold_4G00328370 Rroxscaffold_5G00357650 Rroxscaffold_7G00156890 Rroxscaffold_7G00169080 Rroxscaffold_7G00169090 Rroxscaffold_7G00169100 Rroxscaffold_7G00169170 Rroxscaffold_7G00169190
rosa_rugosa	Rorug01G0027900 Rorug01G0130600 Rorug02G0190700 Rorug04G0411000 Rorug04G0411000 Rorug04G0411200 Rorug04G0411300 Rorug04G0411400 Rorug04G0411500 Rorug05G0139300 Rorug05G0139500 Rorug05G0139800 Rorug05G0139900 Rorug05G0187000 Rorug05G0187000 Rorug05G0187000 Rorug05G0398900 Rorug06G0034600 Rorug06G0283900 Rorug06G0284000 Rorug06G0284100 Rorug06G0394700
rosa_samantha	Rh1BG036800 Rh1CG040700 Rh1CG040800 Rh1DG000200 Rh1DG028900 Rh1DG090600 Rh2AG248900 Rh2CG252600 Rh2CG253100 Rh2CG253500 Rh2CG253600 Rh2CG253900 Rh4DG177700 Rh5CG041500 Rh5CG041700 Rh5CG042100 Rh5CG260400 Rh5CG260500 Rh5CG260600 Rh5CG260900 Rh5CG261100 Rh5DG037300 Rh5DG037400 Rh5DG037500 Rh5DG236800 Rh5DG236900 Rh5DG237100 Rh5DG237500 Rh5DG237600 Rh5DG237700 Rh5DG241100 Rh6CG134500 Rh6CG409700 Rh6CG409800 Rh6CG410100 Rh6DG120900 Rh6DG396500 Rh6DG396600 Rh6DG396700 Rh6DG514400
rosa_wichuraiana	Rw1G003200 Rw1G003210 Rw1G003230 Rw2G019350 Rw4G015240 Rw5G003500 Rw5G003520 Rw5G003530 Rw5G003690 Rw5G003720 Rw5G003730 Rw5G021090 Rw5G021100 Rw5G021110 Rw5G021120 Rw5G021130 Rw6G011870 Rw6G034630 Rw7G038700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1937
AasI	GACNNNNNNGTC	1 cut(s)	1286
Acc36I	ACCTGC	1 cut(s)	1622
Acc65I	GGTACC	2 cut(s)	321, 1610
AccB1I	GGYRCC	4 cut(s)	321, 915, 1610, 1627
AccBSI	CCGCTC	2 cut(s)	354, 1751
AccI	GTMKAC	3 cut(s)	1674, 1761, 2149
AccII	CGCG	3 cut(s)	880, 1008, 1010
AclWI	GGATC	3 cut(s)	962, 1808, 1961
AcsI	RAATTY	4 cut(s)	550, 1539, 1804, 2102
AcuI	CTGAAG	2 cut(s)	51, 1593
AfaI	GTAC	7 cut(s)	59, 323, 1036, 1236, 1601, 1612, 1974
AfiI	CCNNNNNNNGG	1 cut(s)	149
AgsI	TTSAA	5 cut(s)	445, 923, 1245, 1274, 1322
AjiI	CACGTC	1 cut(s)	430
AjnI	CCWGG	2 cut(s)	1554, 2152
AleI	CACNNNNGTG	1 cut(s)	802
AluBI	AGCT	7 cut(s)	454, 534, 696, 715, 737, 833, 1294
AluI	AGCT	7 cut(s)	454, 534, 696, 715, 737, 833, 1294
Alw26I	GTCTC	3 cut(s)	134, 599, 754
AlwI	GGATC	3 cut(s)	962, 1808, 1961
AoxI	GGCC	6 cut(s)	184, 486, 994, 1003, 1552, 1904
ApeKI	GCWGC	5 cut(s)	12, 434, 518, 737, 833
ApoI	RAATTY	4 cut(s)	550, 1539, 1804, 2102
ArsI	GACNNNNNNTTYG	4 cut(s)	19, 51, 822, 854
Asp700I	GAANNNNTTC	4 cut(s)	378, 793, 927, 1326
Asp718I	GGTACC	2 cut(s)	321, 1610
AspLEI	GCGC	2 cut(s)	577, 1010
AspS9I	GGNCC	6 cut(s)	954, 994, 1003, 1157, 1552, 2236
AsuC2I	CCSGG	4 cut(s)	439, 676, 1002, 2249
AsuHPI	GGTGA	2 cut(s)	2222, 2243
AsuNHI	GCTAGC	1 cut(s)	530
AvaII	GGWCC	3 cut(s)	954, 1157, 2236
BanI	GGYRCC	4 cut(s)	321, 915, 1610, 1627
BauI	CACGAG	1 cut(s)	1440
BbsI	GAAGAC	1 cut(s)	711
BbvCI	CCTCAGC	1 cut(s)	455
BbvI	GCAGC	5 cut(s)	24, 421, 530, 724, 820
BccI	CCATC	1 cut(s)	856
BceAI	ACGGC	2 cut(s)	379, 1181
BciT130I	CCWGG	2 cut(s)	1556, 2154
BclI	TGATCA	1 cut(s)	40
BcnI	CCSGG	4 cut(s)	439, 676, 1002, 2249
BcoDI	GTCTC	3 cut(s)	134, 599, 754
BfaI	CTAG	5 cut(s)	531, 693, 2006, 2063, 2145
BfmI	CTRYAG	3 cut(s)	169, 247, 744
BfuAI	ACCTGC	1 cut(s)	1622
BglI	GCCNNNNNGGC	1 cut(s)	1002
BglII	AGATCT	2 cut(s)	136, 274
BisI	GCNGC	9 cut(s)	13, 435, 489, 496, 499, 519, 738, 834, 1006
BlpI	GCTNAGC	1 cut(s)	8
BlsI	GCNGC	9 cut(s)	14, 436, 490, 497, 500, 520, 739, 835, 1007
Bme1390I	CCNGG	6 cut(s)	439, 676, 1002, 1556, 2154, 2249
Bme18I	GGWCC	3 cut(s)	954, 1157, 2236
BmgBI	CACGTC	1 cut(s)	430
BmgT120I	GGNCC	6 cut(s)	954, 994, 1003, 1157, 1552, 2236
BmiI	GGNNCC	6 cut(s)	323, 367, 917, 995, 1612, 1629
BmrFI	CCNGG	6 cut(s)	439, 676, 1002, 1556, 2154, 2249
BmrI	ACTGGG	2 cut(s)	1047, 1148
BmsI	GCATC	4 cut(s)	111, 1084, 1510, 1847
BmtI	GCTAGC	1 cut(s)	534
BmuI	ACTGGG	2 cut(s)	1047, 1148
BpiI	GAAGAC	1 cut(s)	711
BplI	GAGNNNNNCTC	2 cut(s)	264, 296
Bpu10I	CCTNAGC	1 cut(s)	455
Bpu1102I	GCTNAGC	1 cut(s)	8
BpuEI	CTTGAG	1 cut(s)	1036
BpuMI	CCSGG	4 cut(s)	439, 676, 1002, 2249
BsaJI	CCNNGG	7 cut(s)	361, 369, 971, 1110, 1911, 2091, 2247
BsaWI	WCCGGW	3 cut(s)	447, 1630, 1969
BsaXI	ACNNNNNCTCC	2 cut(s)	1691, 1721
Bsc4I	CCNNNNNNNGG	1 cut(s)	149
Bse1I	ACTGG	6 cut(s)	154, 1042, 1143, 1991, 2000, 2027
Bse3DI	GCAATG	2 cut(s)	160, 2211
BseBI	CCWGG	2 cut(s)	1556, 2154
BseDI	CCNNGG	7 cut(s)	361, 369, 971, 1110, 1911, 2091, 2247
BseGI	GGATG	2 cut(s)	43, 645
BseLI	CCNNNNNNNGG	1 cut(s)	149
BseMI	GCAATG	2 cut(s)	160, 2211
BseMII	CTCAG	4 cut(s)	22, 314, 446, 1587
BseNI	ACTGG	6 cut(s)	154, 1042, 1143, 1991, 2000, 2027
BseRI	GAGGAG	3 cut(s)	753, 756, 1033
BseXI	GCAGC	5 cut(s)	24, 421, 530, 724, 820
BsgI	GTGCAG	1 cut(s)	1422
Bsh1236I	CGCG	3 cut(s)	880, 1008, 1010
Bsh1285I	CGRYCG	1 cut(s)	1001
BshFI	GGCC	6 cut(s)	186, 488, 996, 1005, 1554, 1906
BshNI	GGYRCC	4 cut(s)	321, 915, 1610, 1627
BsiEI	CGRYCG	1 cut(s)	1001
BsiSI	CCGG	8 cut(s)	420, 439, 448, 675, 1001, 1631, 1970, 2249
BslFI	GGGAC	3 cut(s)	840, 1155, 1331
BslI	CCNNNNNNNGG	1 cut(s)	149
BsmAI	GTCTC	3 cut(s)	134, 599, 754
BsmFI	GGGAC	3 cut(s)	840, 1155, 1331
BsmI	GAATGC	1 cut(s)	2064
BsnI	GGCC	6 cut(s)	186, 488, 996, 1005, 1554, 1906
Bsp1407I	TGTACA	2 cut(s)	57, 1234
Bsp1720I	GCTNAGC	1 cut(s)	8
Bsp19I	CCATGG	3 cut(s)	369, 971, 1911
BspANI	GGCC	6 cut(s)	186, 488, 996, 1005, 1554, 1906
BspCNI	CTCAG	4 cut(s)	21, 313, 447, 1588
BspFNI	CGCG	3 cut(s)	880, 1008, 1010
BspHI	TCATGA	1 cut(s)	37
BspLI	GGNNCC	6 cut(s)	323, 367, 917, 995, 1612, 1629
BspMAI	CTGCAG	2 cut(s)	251, 748
BspMI	ACCTGC	1 cut(s)	1622
BspOI	GCTAGC	1 cut(s)	534
BspPI	GGATC	3 cut(s)	962, 1808, 1961
BspT107I	GGYRCC	4 cut(s)	321, 915, 1610, 1627
BsrBI	CCGCTC	2 cut(s)	354, 1751
BsrDI	GCAATG	2 cut(s)	160, 2211
BsrGI	TGTACA	2 cut(s)	57, 1234
BsrI	ACTGG	6 cut(s)	154, 1042, 1143, 1991, 2000, 2027
BssECI	CCNNGG	7 cut(s)	361, 369, 971, 1110, 1911, 2091, 2247
BssSI	CACGAG	1 cut(s)	1440
BssT1I	CCWWGG	4 cut(s)	369, 971, 1911, 2091
Bst2BI	CACGAG	1 cut(s)	1440
Bst2UI	CCWGG	2 cut(s)	1556, 2154
Bst6I	CTCTTC	2 cut(s)	1047, 1785
BstAPI	GCANNNNNTGC	3 cut(s)	255, 527, 621
BstAUI	TGTACA	2 cut(s)	57, 1234
BstC8I	GCNNGC	7 cut(s)	247, 335, 493, 532, 626, 1883, 2178
BstDEI	CTNAG	7 cut(s)	8, 300, 455, 476, 506, 1596, 2133
BstDSI	CCRYGG	5 cut(s)	361, 369, 971, 1110, 1911
BstF5I	GGATG	2 cut(s)	43, 645
BstFNI	CGCG	3 cut(s)	880, 1008, 1010
BstHHI	GCGC	2 cut(s)	577, 1010
BstMAI	GTCTC	3 cut(s)	134, 599, 754
BstMCI	CGRYCG	1 cut(s)	1001
BstMWI	GCNNNNNNNGC	6 cut(s)	255, 507, 527, 621, 743, 1002
BstNI	CCWGG	2 cut(s)	1556, 2154
BstNSI	RCATGY	2 cut(s)	337, 1933
BstSCI	CCNGG	6 cut(s)	437, 674, 1000, 1554, 2152, 2247
BstSFI	CTRYAG	3 cut(s)	169, 247, 744
BstUI	CGCG	3 cut(s)	880, 1008, 1010
BstV1I	GCAGC	5 cut(s)	24, 421, 530, 724, 820
BstV2I	GAAGAC	1 cut(s)	711
BstX2I	RGATCY	4 cut(s)	136, 274, 1813, 1966
BstYI	RGATCY	4 cut(s)	136, 274, 1813, 1966
BsuRI	GGCC	6 cut(s)	186, 488, 996, 1005, 1554, 1906
BtgI	CCRYGG	5 cut(s)	361, 369, 971, 1110, 1911
BtgZI	GCGATG	2 cut(s)	243, 438
BtrI	CACGTC	1 cut(s)	430
BtsCI	GGATG	2 cut(s)	43, 645
BtsI	GCAGTG	1 cut(s)	1434
BtsIMutI	CAGTG	7 cut(s)	97, 131, 147, 1434, 1849, 2034, 2074
BveI	ACCTGC	1 cut(s)	1622
Cac8I	GCNNGC	7 cut(s)	247, 335, 493, 532, 626, 1883, 2178
CciI	TCATGA	1 cut(s)	37
CfoI	GCGC	2 cut(s)	577, 1010
Cfr13I	GGNCC	6 cut(s)	954, 994, 1003, 1157, 1552, 2236
CseI	GACGC	2 cut(s)	886, 1422
Csp6I	GTAC	7 cut(s)	58, 322, 1035, 1235, 1600, 1611, 1973
CviAII	CATG	9 cut(s)	38, 334, 370, 662, 972, 1277, 1912, 1930, 2253
CviQI	GTAC	7 cut(s)	58, 322, 1035, 1235, 1600, 1611, 1973
DdeI	CTNAG	7 cut(s)	8, 300, 455, 476, 506, 1596, 2133
DrdI	GACNNNNNNGTC	1 cut(s)	1286
DseDI	GACNNNNNNGTC	1 cut(s)	1286
Eam1104I	CTCTTC	2 cut(s)	1047, 1785
EarI	CTCTTC	2 cut(s)	1047, 1785
EciI	GGCGGA	2 cut(s)	991, 1164
Eco130I	CCWWGG	4 cut(s)	369, 971, 1911, 2091
Eco47I	GGWCC	3 cut(s)	954, 1157, 2236
Eco57I	CTGAAG	2 cut(s)	51, 1593
EcoO109I	RGGNCCY	1 cut(s)	954
EcoRI	GAATTC	2 cut(s)	550, 2102
EcoRII	CCWGG	2 cut(s)	1554, 2152
EcoT14I	CCWWGG	4 cut(s)	369, 971, 1911, 2091
ErhI	CCWWGG	4 cut(s)	369, 971, 1911, 2091
FaeI	CATG	9 cut(s)	41, 337, 373, 665, 975, 1280, 1915, 1933, 2256
FaqI	GGGAC	3 cut(s)	840, 1155, 1331
FatI	CATG	9 cut(s)	37, 333, 369, 661, 971, 1276, 1911, 1929, 2252
FauI	CCCGC	2 cut(s)	873, 1744
FbaI	TGATCA	1 cut(s)	40
FblI	GTMKAC	3 cut(s)	1674, 1761, 2149
Fnu4HI	GCNGC	9 cut(s)	13, 435, 489, 496, 499, 519, 738, 834, 1006
FokI	GGATG	2 cut(s)	30, 632
Fsp4HI	GCNGC	9 cut(s)	13, 435, 489, 496, 499, 519, 738, 834, 1006
FspBI	CTAG	5 cut(s)	531, 693, 2006, 2063, 2145
GlaI	GCGC	2 cut(s)	576, 1009
GluI	GCNGC	9 cut(s)	13, 435, 489, 496, 499, 519, 738, 834, 1006
HaeIII	GGCC	6 cut(s)	186, 488, 996, 1005, 1554, 1906
HapII	CCGG	8 cut(s)	420, 439, 448, 675, 1001, 1631, 1970, 2249
HgaI	GACGC	2 cut(s)	886, 1422
HhaI	GCGC	2 cut(s)	577, 1010
Hin1II	CATG	9 cut(s)	41, 337, 373, 665, 975, 1280, 1915, 1933, 2256
Hin6I	GCGC	2 cut(s)	575, 1008
HinP1I	GCGC	2 cut(s)	575, 1008
HincII	GTYRAC	2 cut(s)	1069, 1927
HindII	GTYRAC	2 cut(s)	1069, 1927
HinfI	GANTC	7 cut(s)	923, 1084, 1206, 1446, 1531, 2137, 2186
HpaII	CCGG	8 cut(s)	420, 439, 448, 675, 1001, 1631, 1970, 2249
HphI	GGTGA	2 cut(s)	2222, 2243
Hpy166II	GTNNAC	8 cut(s)	60, 1069, 1165, 1675, 1762, 1927, 2150, 2213
Hpy188III	TCNNGA	7 cut(s)	38, 346, 960, 1178, 1361, 1490, 2006
Hpy8I	GTNNAC	8 cut(s)	60, 1069, 1165, 1675, 1762, 1927, 2150, 2213
Hpy99I	CGWCG	2 cut(s)	80, 880
HpyCH4IV	ACGT	1 cut(s)	429
HpyCH4V	TGCA	9 cut(s)	249, 333, 518, 588, 615, 746, 1439, 1523, 1885
HpyF10VI	GCNNNNNNNGC	6 cut(s)	255, 507, 527, 621, 743, 1002
HpyF3I	CTNAG	7 cut(s)	8, 300, 455, 476, 506, 1596, 2133
HpySE526I	ACGT	1 cut(s)	429
Hsp92II	CATG	9 cut(s)	41, 337, 373, 665, 975, 1280, 1915, 1933, 2256
HspAI	GCGC	2 cut(s)	575, 1008
KpnI	GGTACC	2 cut(s)	325, 1614
Ksp22I	TGATCA	1 cut(s)	40
LmnI	GCTCC	4 cut(s)	359, 371, 1299, 1748
Lsp1109I	GCAGC	5 cut(s)	24, 421, 530, 724, 820
LweI	GCATC	4 cut(s)	111, 1084, 1510, 1847
MaeI	CTAG	5 cut(s)	531, 693, 2006, 2063, 2145
MaeII	ACGT	1 cut(s)	429
MaeIII	GTNAC	8 cut(s)	19, 641, 685, 1115, 1451, 1652, 1872, 1940
MbiI	CCGCTC	2 cut(s)	354, 1751
MfeI	CAATTG	2 cut(s)	210, 560
MflI	RGATCY	4 cut(s)	136, 274, 1813, 1966
MlyI	GAGTC	1 cut(s)	1200
MmeI	TCCRAC	2 cut(s)	582, 1038
MroXI	GAANNNNTTC	4 cut(s)	378, 793, 927, 1326
MseI	TTAA	5 cut(s)	234, 1662, 1808, 1863, 1917
MslI	CAYNNNNRTG	4 cut(s)	802, 1305, 1464, 1491
MspI	CCGG	8 cut(s)	420, 439, 448, 675, 1001, 1631, 1970, 2249
MspR9I	CCNGG	6 cut(s)	439, 676, 1002, 1556, 2154, 2249
MunI	CAATTG	2 cut(s)	210, 560
Mva1269I	GAATGC	1 cut(s)	2064
MvaI	CCWGG	2 cut(s)	1556, 2154
MvnI	CGCG	3 cut(s)	880, 1008, 1010
MwoI	GCNNNNNNNGC	6 cut(s)	255, 507, 527, 621, 743, 1002
NciI	CCSGG	4 cut(s)	439, 676, 1002, 2249
NcoI	CCATGG	3 cut(s)	369, 971, 1911
NheI	GCTAGC	1 cut(s)	530
NlaIII	CATG	9 cut(s)	41, 337, 373, 665, 975, 1280, 1915, 1933, 2256
NlaIV	GGNNCC	6 cut(s)	323, 367, 917, 995, 1612, 1629
NmeAIII	GCCGAG	1 cut(s)	2003
NmuCI	GTSAC	1 cut(s)	641
NspI	RCATGY	2 cut(s)	337, 1933
OliI	CACNNNNGTG	1 cut(s)	802
PaeI	GCATGC	1 cut(s)	337
PagI	TCATGA	1 cut(s)	37
PctI	GAATGC	1 cut(s)	2064
PdmI	GAANNNNTTC	4 cut(s)	378, 793, 927, 1326
PfeI	GAWTC	6 cut(s)	923, 1084, 1446, 1531, 2137, 2186
PkrI	GCNGC	9 cut(s)	14, 436, 490, 497, 500, 520, 739, 835, 1007
PleI	GAGTC	1 cut(s)	1200
PpsI	GAGTC	1 cut(s)	1200
PpuMI	RGGWCCY	1 cut(s)	954
PsiI	TTATAA	1 cut(s)	1937
Psp5II	RGGWCCY	1 cut(s)	954
Psp6I	CCWGG	2 cut(s)	1554, 2152
PspGI	CCWGG	2 cut(s)	1554, 2152
PspN4I	GGNNCC	6 cut(s)	323, 367, 917, 995, 1612, 1629
PspPI	GGNCC	6 cut(s)	954, 994, 1003, 1157, 1552, 2236
PspPPI	RGGWCCY	1 cut(s)	954
PstI	CTGCAG	2 cut(s)	251, 748
PsuI	RGATCY	4 cut(s)	136, 274, 1813, 1966
RsaI	GTAC	7 cut(s)	59, 323, 1036, 1236, 1601, 1612, 1974
RsaNI	GTAC	7 cut(s)	58, 322, 1035, 1235, 1600, 1611, 1973
RseI	CAYNNNNRTG	4 cut(s)	802, 1305, 1464, 1491
SaqAI	TTAA	5 cut(s)	234, 1662, 1808, 1863, 1917
SatI	GCNGC	9 cut(s)	13, 435, 489, 496, 499, 519, 738, 834, 1006
Sau96I	GGNCC	6 cut(s)	954, 994, 1003, 1157, 1552, 2236
SbfI	CCTGCAGG	1 cut(s)	251
SchI	GAGTC	1 cut(s)	1200
ScrFI	CCNGG	6 cut(s)	439, 676, 1002, 1556, 2154, 2249
SdaI	CCTGCAGG	1 cut(s)	251
SfaNI	GCATC	4 cut(s)	111, 1084, 1510, 1847
SfcI	CTRYAG	3 cut(s)	169, 247, 744
SfiI	GGCCNNNNNGGCC	1 cut(s)	1002
SinI	GGWCC	3 cut(s)	954, 1157, 2236
SmiMI	CAYNNNNRTG	4 cut(s)	802, 1305, 1464, 1491
SmlI	CTYRAG	1 cut(s)	1015
SmoI	CTYRAG	1 cut(s)	1015
SphI	GCATGC	1 cut(s)	337
Sse8387I	CCTGCAGG	1 cut(s)	251
SspMI	CTAG	5 cut(s)	531, 693, 2006, 2063, 2145
StyD4I	CCNGG	6 cut(s)	437, 674, 1000, 1554, 2152, 2247
StyI	CCWWGG	4 cut(s)	369, 971, 1911, 2091
TaiI	ACGT	1 cut(s)	432
TaqI	TCGA	6 cut(s)	261, 347, 828, 860, 961, 1579
TatI	WGTACW	2 cut(s)	57, 1234
TauI	GCSGC	4 cut(s)	491, 498, 501, 1008
TfiI	GAWTC	6 cut(s)	923, 1084, 1446, 1531, 2137, 2186
Tru1I	TTAA	5 cut(s)	234, 1662, 1808, 1863, 1917
Tru9I	TTAA	5 cut(s)	234, 1662, 1808, 1863, 1917
TscAI	CASTG	7 cut(s)	97, 131, 154, 1441, 1849, 2034, 2074
TseFI	GTSAC	1 cut(s)	641
TseI	GCWGC	5 cut(s)	12, 434, 518, 737, 833
Tsp45I	GTSAC	1 cut(s)	641
TspDTI	ATGAA	9 cut(s)	620, 1065, 1065, 1140, 1263, 1448, 1475, 1803, 1908
TspGWI	ACGGA	2 cut(s)	417, 1721
TspRI	CASTG	7 cut(s)	97, 131, 154, 1441, 1849, 2034, 2074
VpaK11BI	GGWCC	3 cut(s)	954, 1157, 2236
XapI	RAATTY	4 cut(s)	550, 1539, 1804, 2102
XbaI	TCTAGA	1 cut(s)	2005
XceI	RCATGY	2 cut(s)	337, 1933
XmiI	GTMKAC	3 cut(s)	1674, 1761, 2149
XmnI	GAANNNNTTC	4 cut(s)	378, 793, 927, 1326
XspI	CTAG	5 cut(s)	531, 693, 2006, 2063, 2145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.