FvH4_4g08975

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000437
Physical Location & Seq
Forward (+)
10066699 .. 10070982
4284 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g08975.t1

Sequence Viewer

Length: 621 bp
ATGGCTAGCCAGGAACAACACTCCCAATACTTGTCTAACACAGTGGATACTCTTGCAAGCAAAGTGAATAGCCAAGGAGCTTCTATTTCAAAGCTTGAAACACAAGTGGGGCAACTAGCTGCTAGGTTAAGTGAAAGAGAGCATGGGAAATTTCCGAGTCAAATCGAGATCAATCCAAGTAGCCATAAGCATATAAATTCGATTACCACCTTGAGGAGTGGAAGAGTGATTGATAATAAGGTGGGCAGCAATGAGGAAAACGAGCAAGAAGAAGAACATGAAGCTGACACACCTCAGGATCACAGTGTTGTTTCACTCCCGAAAGGGGCTGTTGAAGAAAAAATTGTGCATCAAAGTTTTCTGGAAAACCATTCTTCCGATCCTATAGAGACATGCCTTGCTTATAGTGGCATGGAATTCACTGAGCCGAGGATTGAAGAGGCTGCTGCAATCCTCGACGCTGTTCCTAAGTATTCTCCACAATTTCAGCAGAGTTTTGAAGCTCTTCCTCCTTCCAATGCCAAGATTGTTACCTCTGTTTTGGAGGTCGCCGGAATTGACCTCCGGCCGCCGCTGCCGGCGGAGCCGCCGGCGGCGCCGCCGCCGGTTGGGAGATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

207

Amino Acids

22.44

Weight (kDa)

4.92

Isoelectric Point (pI)

63.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000437)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G06105
fragaria_vesca FvH4_1g09709 FvH4_4g02101 FvH4_4g08975 FvH4_6g23372 FvH4_6g39851 FvH4_c1g00300
malus_domestica MD01G1176100.v1.1 MD09G1284900.v1.1 MD15G1306600.v1.1
prunus_persica Prupe.1G227700_v2.0.a1
pyrus_communis pycom01g00630 pycom01g01020 pycom01g01690 pycom01g01760 pycom01g04190 pycom01g04400 pycom02g18130 pycom03g10160 pycom05g06370 pycom05g08930 pycom06g05590 pycom10g06320 pycom11g14330 pycom11g15320 pycom11g16240 pycom12416g00050 pycom12420g00010 pycom12420g00120 pycom12426g00180 pycom12426g00710 pycom12531g00010 pycom1256g00020 pycom1256g00050 pycom1341g00030 pycom1353g00030 pycom13g23070 pycom13g23210 pycom13g26260 pycom13g26370 pycom13g26470 pycom13g26980 pycom14g08550 pycom14g08850 pycom1534g00040 pycom15g28760 pycom15g31230 pycom1604g00040 pycom16g21900 pycom16g26030 pycom1739g00020 pycom1739g00050 pycom17g12970 pycom17g17960 pycom17g18300 pycom17g18650 pycom2172g00020 pycom2438g00020 pycom436g00370 pycom436g00390 pycom576g00050 pycom76g00020
rosa_chinensis RchiOBHm_Chr1g0320811 RchiOBHm_Chr2g0135321 RchiOBHm_Chr3g0485721 RchiOBHm_Chr7g0236571
rosa_multiflora Rmu_sc0000185.1_g000007 Rmu_sc0002094.1_g000030 Rmu_sc0002764.1_g000007 Rmu_sc0002809.1_g000014 Rmu_sc0003005.1_g000007 Rmu_sc0003798.1_g000005 Rmu_sc0004646.1_g000027 Rmu_sc0004665.1_g000009 Rmu_sc0004818.1_g000001 Rmu_sc0004988.1_g000031 Rmu_sc0006373.1_g000007 Rmu_sc0007142.1_g000015 Rmu_sc0009930.1_g000001 Rmu_sc0011451.1_g000001 Rmu_sc0020424.1_g000001 Rmu_sc0036944.1_g000001 Rmu_ssc0000062.1_g000010
rosa_roxburghii Rroxscaffold_2G00123930 Rroxscaffold_3G00231480 Rroxscaffold_6G00413880
rosa_rugosa Rorug04G0084800
rosa_samantha Rh3BG150500 Rh6DG232400
rosa_wichuraiana Rw2G018400 Rw3G027860 Rw4G021220 Rw6G020670 Rw6G037970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 595
AciI CCGC 7 cut(s) 569, 572, 581, 587, 593, 599, 602
AclWI GGATC 2 cut(s) 306, 374
AcoI YGGCCR 1 cut(s) 566
AcsI RAATTY 3 cut(s) 149, 196, 416
AcyI GRCGYC 1 cut(s) 596
AfiI CCNNNNNNNGG 3 cut(s) 213, 325, 608
AgsI TTSAA 5 cut(s) 90, 98, 335, 437, 500
AjnI CCWGG 1 cut(s) 9
AluBI AGCT 5 cut(s) 80, 94, 119, 284, 503
AluI AGCT 5 cut(s) 80, 94, 119, 284, 503
Alw26I GTCTC 1 cut(s) 383
AlwI GGATC 2 cut(s) 306, 374
AoxI GGCC 1 cut(s) 566
ApeKI GCWGC 5 cut(s) 119, 246, 443, 446, 574
ApoI RAATTY 3 cut(s) 149, 196, 416
Asp700I GAANNNNTTC 1 cut(s) 504
AspLEI GCGC 1 cut(s) 598
AsuNHI GCTAGC 1 cut(s) 5
AxyI CCTNAGG 1 cut(s) 294
BanI GGYRCC 1 cut(s) 595
BbvI GCAGC 5 cut(s) 106, 258, 430, 433, 561
BciT130I CCWGG 1 cut(s) 11
BciVI GTATCC 1 cut(s) 40
BcoDI GTCTC 1 cut(s) 383
BfaI CTAG 3 cut(s) 6, 116, 123
BfmI CTRYAG 1 cut(s) 384
BfoI RGCGCY 1 cut(s) 599
BfuI GTATCC 1 cut(s) 40
Bme1390I CCNGG 1 cut(s) 11
BmiI GGNNCC 2 cut(s) 585, 597
BmrFI CCNGG 1 cut(s) 11
BmsI GCATC 1 cut(s) 358
BmtI GCTAGC 1 cut(s) 9
BpuEI CTTGAG 1 cut(s) 232
BsaHI GRCGYC 1 cut(s) 596
BsaJI CCNNGG 2 cut(s) 73, 428
Bsc4I CCNNNNNNNGG 3 cut(s) 213, 325, 608
Bse118I RCCGGY 3 cut(s) 577, 589, 604
Bse21I CCTNAGG 1 cut(s) 294
Bse3DI GCAATG 1 cut(s) 256
BseBI CCWGG 1 cut(s) 11
BseDI CCNNGG 2 cut(s) 73, 428
BseLI CCNNNNNNNGG 3 cut(s) 213, 325, 608
BseMI GCAATG 1 cut(s) 256
BseMII CTCAG 2 cut(s) 308, 414
BseRI GAGGAG 1 cut(s) 229
BseX3I CGGCCG 1 cut(s) 566
BseXI GCAGC 5 cut(s) 106, 258, 430, 433, 561
Bsh1285I CGRYCG 1 cut(s) 569
BshFI GGCC 1 cut(s) 568
BshNI GGYRCC 1 cut(s) 595
BsiEI CGRYCG 1 cut(s) 569
BsiSI CCGG 5 cut(s) 552, 565, 578, 590, 605
BslI CCNNNNNNNGG 3 cut(s) 213, 325, 608
BsmAI GTCTC 1 cut(s) 383
BsnI GGCC 1 cut(s) 568
Bsp143I GATC 3 cut(s) 168, 298, 379
BspACI CCGC 7 cut(s) 569, 572, 581, 587, 593, 599, 602
BspANI GGCC 1 cut(s) 568
BspCNI CTCAG 2 cut(s) 307, 415
BspLI GGNNCC 2 cut(s) 585, 597
BspOI GCTAGC 1 cut(s) 9
BspPI GGATC 2 cut(s) 306, 374
BspQI GCTCTTC 1 cut(s) 510
BspT107I GGYRCC 1 cut(s) 595
BsrDI GCAATG 1 cut(s) 256
BsrFI RCCGGY 3 cut(s) 577, 589, 604
BssAI RCCGGY 3 cut(s) 577, 589, 604
BssECI CCNNGG 2 cut(s) 73, 428
BssMI GATC 3 cut(s) 168, 298, 379
BssNI GRCGYC 1 cut(s) 596
BssT1I CCWWGG 1 cut(s) 73
Bst2UI CCWGG 1 cut(s) 11
Bst4CI ACNGT 2 cut(s) 43, 305
Bst6I CTCTTC 3 cut(s) 217, 432, 510
BstACI GRCGYC 1 cut(s) 596
BstC8I GCNNGC 4 cut(s) 7, 58, 579, 591
BstDEI CTNAG 3 cut(s) 294, 423, 468
BstH2I RGCGCY 1 cut(s) 599
BstHHI GCGC 1 cut(s) 598
BstKTI GATC 3 cut(s) 171, 301, 382
BstMAI GTCTC 1 cut(s) 383
BstMBI GATC 3 cut(s) 168, 298, 379
BstMCI CGRYCG 1 cut(s) 569
BstMWI GCNNNNNNNGC 3 cut(s) 574, 583, 595
BstNI CCWGG 1 cut(s) 11
BstNSI RCATGY 1 cut(s) 396
BstSCI CCNGG 1 cut(s) 9
BstSFI CTRYAG 1 cut(s) 384
BstV1I GCAGC 5 cut(s) 106, 258, 430, 433, 561
BstZI CGGCCG 1 cut(s) 566
Bsu36I CCTNAGG 1 cut(s) 294
BsuI GTATCC 1 cut(s) 40
BsuRI GGCC 1 cut(s) 568
BtsIMutI CAGTG 3 cut(s) 48, 310, 420
Cac8I GCNNGC 4 cut(s) 7, 58, 579, 591
CfoI GCGC 1 cut(s) 598
Cfr10I RCCGGY 3 cut(s) 577, 589, 604
CseI GACGC 1 cut(s) 467
CviAII CATG 4 cut(s) 143, 278, 393, 412
DdeI CTNAG 3 cut(s) 294, 423, 468
DinI GGCGCC 1 cut(s) 597
DpnI GATC 3 cut(s) 170, 300, 381
DpnII GATC 3 cut(s) 168, 298, 379
EaeI YGGCCR 1 cut(s) 566
EagI CGGCCG 1 cut(s) 566
Eam1104I CTCTTC 3 cut(s) 217, 432, 510
EarI CTCTTC 3 cut(s) 217, 432, 510
EciI GGCGGA 1 cut(s) 596
EclXI CGGCCG 1 cut(s) 566
Eco130I CCWWGG 1 cut(s) 73
Eco52I CGGCCG 1 cut(s) 566
Eco81I CCTNAGG 1 cut(s) 294
EcoRI GAATTC 1 cut(s) 416
EcoRII CCWGG 1 cut(s) 9
EcoT14I CCWWGG 1 cut(s) 73
EgeI GGCGCC 1 cut(s) 597
EheI GGCGCC 1 cut(s) 597
ErhI CCWWGG 1 cut(s) 73
FaeI CATG 4 cut(s) 146, 281, 396, 415
FaiI YATR 9 cut(s) 144, 186, 192, 194, 279, 386, 394, 405, 413
FatI CATG 4 cut(s) 142, 277, 392, 411
FspBI CTAG 3 cut(s) 6, 116, 123
GlaI GCGC 1 cut(s) 597
HaeII RGCGCY 1 cut(s) 599
HaeIII GGCC 1 cut(s) 568
HapII CCGG 5 cut(s) 552, 565, 578, 590, 605
HgaI GACGC 1 cut(s) 467
HhaI GCGC 1 cut(s) 598
Hin1I GRCGYC 1 cut(s) 596
Hin1II CATG 4 cut(s) 146, 281, 396, 415
Hin6I GCGC 1 cut(s) 596
HinP1I GCGC 1 cut(s) 596
HindIII AAGCTT 1 cut(s) 92
HinfI GANTC 1 cut(s) 157
HpaII CCGG 5 cut(s) 552, 565, 578, 590, 605
Hpy188I TCNGA 2 cut(s) 156, 379
Hpy188III TCNNGA 4 cut(s) 166, 296, 319, 362
Hpy99I CGWCG 1 cut(s) 461
HpyAV CCTTC 1 cut(s) 522
HpyCH4III ACNGT 2 cut(s) 43, 305
HpyCH4V TGCA 3 cut(s) 56, 349, 449
HpyF10VI GCNNNNNNNGC 3 cut(s) 574, 583, 595
HpyF3I CTNAG 3 cut(s) 294, 423, 468
Hsp92I GRCGYC 1 cut(s) 596
Hsp92II CATG 4 cut(s) 146, 281, 396, 415
HspAI GCGC 1 cut(s) 596
KasI GGCGCC 1 cut(s) 595
KroI GCCGGC 2 cut(s) 577, 589
KroNI GCCGGC 2 cut(s) 579, 591
Kzo9I GATC 3 cut(s) 168, 298, 379
LguI GCTCTTC 1 cut(s) 510
LmnI GCTCC 2 cut(s) 77, 583
LpnPI CCDG 7 cut(s) 23, 281, 347, 565, 578, 591, 603
Lsp1109I GCAGC 5 cut(s) 106, 258, 430, 433, 561
LweI GCATC 1 cut(s) 358
MaeI CTAG 3 cut(s) 6, 116, 123
MaeIII GTNAC 1 cut(s) 529
MalI GATC 3 cut(s) 170, 300, 381
MboI GATC 3 cut(s) 168, 298, 379
MboII GAAGA 7 cut(s) 234, 281, 284, 347, 366, 449, 497
MluCI AATT 6 cut(s) 149, 196, 342, 416, 482, 555
Mly113I GGCGCC 1 cut(s) 596
MlyI GAGTC 1 cut(s) 166
MreI CGCCGGCG 1 cut(s) 589
MroNI GCCGGC 2 cut(s) 577, 589
MroXI GAANNNNTTC 1 cut(s) 504
MseI TTAA 2 cut(s) 128, 619
MspA1I CMGCKG 1 cut(s) 574
MspI CCGG 5 cut(s) 552, 565, 578, 590, 605
MspR9I CCNGG 1 cut(s) 11
MvaI CCWGG 1 cut(s) 11
MwoI GCNNNNNNNGC 3 cut(s) 574, 583, 595
NaeI GCCGGC 2 cut(s) 579, 591
NarI GGCGCC 1 cut(s) 596
NdeII GATC 3 cut(s) 168, 298, 379
NgoMIV GCCGGC 2 cut(s) 577, 589
NheI GCTAGC 1 cut(s) 5
NlaIII CATG 4 cut(s) 146, 281, 396, 415
NlaIV GGNNCC 2 cut(s) 585, 597
NmeAIII GCCGAG 1 cut(s) 453
NspI RCATGY 1 cut(s) 396
PciSI GCTCTTC 1 cut(s) 510
PdiI GCCGGC 2 cut(s) 579, 591
PdmI GAANNNNTTC 1 cut(s) 504
PleI GAGTC 1 cut(s) 165
PluTI GGCGCC 1 cut(s) 599
PpsI GAGTC 1 cut(s) 165
Psp6I CCWGG 1 cut(s) 9
PspGI CCWGG 1 cut(s) 9
PspN4I GGNNCC 2 cut(s) 585, 597
SapI GCTCTTC 1 cut(s) 510
SaqAI TTAA 2 cut(s) 128, 619
Sau3AI GATC 3 cut(s) 168, 298, 379
SchI GAGTC 1 cut(s) 166
ScrFI CCNGG 1 cut(s) 11
SfaNI GCATC 1 cut(s) 358
SfcI CTRYAG 1 cut(s) 384
SfoI GGCGCC 1 cut(s) 597
SgrAI CRCCGGYG 1 cut(s) 589
SmlI CTYRAG 1 cut(s) 211
SmoI CTYRAG 1 cut(s) 211
Sse9I AATT 6 cut(s) 149, 196, 342, 416, 482, 555
SsiI CCGC 7 cut(s) 569, 572, 581, 587, 593, 599, 602
SspDI GGCGCC 1 cut(s) 595
SspMI CTAG 3 cut(s) 6, 116, 123
StyD4I CCNGG 1 cut(s) 9
StyI CCWWGG 1 cut(s) 73
TaaI ACNGT 2 cut(s) 43, 305
TaqI TCGA 3 cut(s) 165, 200, 456
TasI AATT 6 cut(s) 149, 196, 342, 416, 482, 555
TauI GCSGC 6 cut(s) 571, 574, 589, 596, 601, 604
Tru1I TTAA 2 cut(s) 128, 619
Tru9I TTAA 2 cut(s) 128, 619
TscAI CASTG 3 cut(s) 48, 310, 427
TseI GCWGC 5 cut(s) 119, 246, 443, 446, 574
TspDTI ATGAA 1 cut(s) 294
TspRI CASTG 3 cut(s) 48, 310, 427
XapI RAATTY 3 cut(s) 149, 196, 416
XceI RCATGY 1 cut(s) 396
XmnI GAANNNNTTC 1 cut(s) 504
XspI CTAG 3 cut(s) 6, 116, 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.