transposition, RNA-mediated
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 164 |
| AgsI | TTSAA | 4 cut(s) | 74, 113, 187, 247 |
| AluBI | AGCT | 2 cut(s) | 31, 126 |
| AluI | AGCT | 2 cut(s) | 31, 126 |
| AlwI | GGATC | 1 cut(s) | 164 |
| ApeKI | GCWGC | 1 cut(s) | 5 |
| AsuC2I | CCSGG | 1 cut(s) | 221 |
| AsuHPI | GGTGA | 1 cut(s) | 235 |
| BbvI | GCAGC | 1 cut(s) | 17 |
| BccI | CCATC | 1 cut(s) | 227 |
| BcnI | CCSGG | 1 cut(s) | 221 |
| BfaI | CTAG | 2 cut(s) | 123, 305 |
| BisI | GCNGC | 1 cut(s) | 6 |
| BlsI | GCNGC | 1 cut(s) | 7 |
| Bme1390I | CCNGG | 1 cut(s) | 221 |
| BmrFI | CCNGG | 1 cut(s) | 221 |
| BpuEI | CTTGAG | 1 cut(s) | 193 |
| BpuMI | CCSGG | 1 cut(s) | 221 |
| BsaJI | CCNNGG | 3 cut(s) | 151, 162, 219 |
| BseDI | CCNNGG | 3 cut(s) | 151, 162, 219 |
| BseMII | CTCAG | 1 cut(s) | 105 |
| BseXI | GCAGC | 1 cut(s) | 17 |
| BsgI | GTGCAG | 1 cut(s) | 116 |
| BsiSI | CCGG | 1 cut(s) | 221 |
| BsmI | GAATGC | 1 cut(s) | 69 |
| Bsp143I | GATC | 1 cut(s) | 169 |
| Bsp19I | CCATGG | 2 cut(s) | 151, 162 |
| BspCNI | CTCAG | 1 cut(s) | 104 |
| BspPI | GGATC | 1 cut(s) | 164 |
| BssECI | CCNNGG | 3 cut(s) | 151, 162, 219 |
| BssMI | GATC | 1 cut(s) | 169 |
| BssT1I | CCWWGG | 2 cut(s) | 151, 162 |
| BstDEI | CTNAG | 2 cut(s) | 91, 144 |
| BstDSI | CCRYGG | 2 cut(s) | 151, 162 |
| BstKTI | GATC | 1 cut(s) | 172 |
| BstMBI | GATC | 1 cut(s) | 169 |
| BstSCI | CCNGG | 1 cut(s) | 219 |
| BstV1I | GCAGC | 1 cut(s) | 17 |
| BstX2I | RGATCY | 1 cut(s) | 169 |
| BstYI | RGATCY | 1 cut(s) | 169 |
| BtgI | CCRYGG | 2 cut(s) | 151, 162 |
| CviAII | CATG | 4 cut(s) | 58, 152, 163, 214 |
| CviJI | RGCY | 4 cut(s) | 31, 126, 284, 308 |
| CviKI_1 | RGCY | 4 cut(s) | 31, 126, 284, 308 |
| DdeI | CTNAG | 2 cut(s) | 91, 144 |
| DpnI | GATC | 1 cut(s) | 171 |
| DpnII | GATC | 1 cut(s) | 169 |
| Eco130I | CCWWGG | 2 cut(s) | 151, 162 |
| EcoT14I | CCWWGG | 2 cut(s) | 151, 162 |
| EcoT22I | ATGCAT | 1 cut(s) | 71 |
| ErhI | CCWWGG | 2 cut(s) | 151, 162 |
| FaeI | CATG | 4 cut(s) | 61, 155, 166, 217 |
| FaiI | YATR | 8 cut(s) | 59, 67, 138, 153, 164, 215, 300, 328 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 110, 142 |
| FatI | CATG | 4 cut(s) | 57, 151, 162, 213 |
| Fnu4HI | GCNGC | 1 cut(s) | 6 |
| Fsp4HI | GCNGC | 1 cut(s) | 6 |
| FspBI | CTAG | 2 cut(s) | 123, 305 |
| GluI | GCNGC | 1 cut(s) | 6 |
| HapII | CCGG | 1 cut(s) | 221 |
| Hin1II | CATG | 4 cut(s) | 61, 155, 166, 217 |
| HpaII | CCGG | 1 cut(s) | 221 |
| HphI | GGTGA | 1 cut(s) | 235 |
| Hpy188I | TCNGA | 1 cut(s) | 94 |
| Hpy188III | TCNNGA | 1 cut(s) | 42 |
| Hpy99I | CGWCG | 1 cut(s) | 107 |
| HpyAV | CCTTC | 2 cut(s) | 181, 247 |
| HpyCH4V | TGCA | 2 cut(s) | 69, 133 |
| HpyF3I | CTNAG | 2 cut(s) | 91, 144 |
| Hsp92II | CATG | 4 cut(s) | 61, 155, 166, 217 |
| Kzo9I | GATC | 1 cut(s) | 169 |
| LmnI | GCTCC | 2 cut(s) | 28, 237 |
| LpnPI | CCDG | 2 cut(s) | 234, 325 |
| Lsp1109I | GCAGC | 1 cut(s) | 17 |
| MaeI | CTAG | 2 cut(s) | 123, 305 |
| MalI | GATC | 1 cut(s) | 171 |
| MboI | GATC | 1 cut(s) | 169 |
| MboII | GAAGA | 2 cut(s) | 179, 259 |
| MflI | RGATCY | 1 cut(s) | 169 |
| MluCI | AATT | 1 cut(s) | 113 |
| MnlI | CCTC | 2 cut(s) | 100, 190 |
| Mph1103I | ATGCAT | 1 cut(s) | 71 |
| MseI | TTAA | 1 cut(s) | 116 |
| MspI | CCGG | 1 cut(s) | 221 |
| MspR9I | CCNGG | 1 cut(s) | 221 |
| Mva1269I | GAATGC | 1 cut(s) | 69 |
| NciI | CCSGG | 1 cut(s) | 221 |
| NcoI | CCATGG | 2 cut(s) | 151, 162 |
| NdeII | GATC | 1 cut(s) | 169 |
| NlaIII | CATG | 4 cut(s) | 61, 155, 166, 217 |
| NsiI | ATGCAT | 1 cut(s) | 71 |
| PctI | GAATGC | 1 cut(s) | 69 |
| PkrI | GCNGC | 1 cut(s) | 7 |
| PsuI | RGATCY | 1 cut(s) | 169 |
| SaqAI | TTAA | 1 cut(s) | 116 |
| SatI | GCNGC | 1 cut(s) | 6 |
| Sau3AI | GATC | 1 cut(s) | 169 |
| ScrFI | CCNGG | 1 cut(s) | 221 |
| SetI | ASST | 5 cut(s) | 33, 92, 128, 201, 258 |
| SmlI | CTYRAG | 1 cut(s) | 208 |
| SmoI | CTYRAG | 1 cut(s) | 208 |
| Sse9I | AATT | 1 cut(s) | 113 |
| SspMI | CTAG | 2 cut(s) | 123, 305 |
| StyD4I | CCNGG | 1 cut(s) | 219 |
| StyI | CCWWGG | 2 cut(s) | 151, 162 |
| TaqI | TCGA | 1 cut(s) | 16 |
| TaqII | GACCGA | 1 cut(s) | 116 |
| TasI | AATT | 1 cut(s) | 113 |
| Tru1I | TTAA | 1 cut(s) | 116 |
| Tru9I | TTAA | 1 cut(s) | 116 |
| TseI | GCWGC | 1 cut(s) | 5 |
| TspDTI | ATGAA | 2 cut(s) | 266, 315 |
| XspI | CTAG | 2 cut(s) | 123, 305 |
| Zsp2I | ATGCAT | 1 cut(s) | 71 |