Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000437

Physical Location & Seq

Genomic Coordinates Forward (+)

8375619 .. 8377451

Gene Structure 1833 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55092

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGCGTTATAGAGATCAGTTAGGTAGATTTTCTAAAAAGCCTGAGTGTGAAACTTTGTTTGGCAATTTGTTTGAGTCTTCGAGTTCGTCTGCATCATCTGTAAACATGGTAGACGACGACAATAATAATGTAAACAATGACCAAAACAATGTTTTGAATAATGTGCTCAACAATAATCTTCTTCCCCCACCTCCTCCACCTAGGACTTTGCAGACTTACTTGCATCCTGCACGTAATGCTCAGCCTTCTTGCATCATGTTACCACCTAACATGCCCAACATTGATTTTAGACCTGGCATTGTTCAACTCCTTCCTGCATTTCATGGTTTGGAAAATGAAAATCCATATGTGCATGTTAGGGCATTCGAGGAAGCAGTTACTGCATTTTATGATCAAGTTGCAGCCATTGATTTTGTCAAACTAAAATTCTTTCCATTTTCTTTGCGGGACAAGGCAAAAGCTTGGCTGTATTCTTTGGGGCTAGATCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009506 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0032991 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0055044 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_22 HA2 Helicase_C OB_NTP_bind

Protein Analysis

163

Amino Acids

18.47

Weight (kDa)

5.54

Isoelectric Point (pI)

47.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000437)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06105
fragaria_vesca	FvH4_1g09709 FvH4_4g02101 FvH4_4g08975 FvH4_6g23372 FvH4_6g39851 FvH4_c1g00300
malus_domestica	MD01G1176100.v1.1 MD09G1284900.v1.1 MD15G1306600.v1.1
prunus_persica	Prupe.1G227700_v2.0.a1
pyrus_communis	pycom01g00630 pycom01g01020 pycom01g01690 pycom01g01760 pycom01g04190 pycom01g04400 pycom02g18130 pycom03g10160 pycom05g06370 pycom05g08930 pycom06g05590 pycom10g06320 pycom11g14330 pycom11g15320 pycom11g16240 pycom12416g00050 pycom12420g00010 pycom12420g00120 pycom12426g00180 pycom12426g00710 pycom12531g00010 pycom1256g00020 pycom1256g00050 pycom1341g00030 pycom1353g00030 pycom13g23070 pycom13g23210 pycom13g26260 pycom13g26370 pycom13g26470 pycom13g26980 pycom14g08550 pycom14g08850 pycom1534g00040 pycom15g28760 pycom15g31230 pycom1604g00040 pycom16g21900 pycom16g26030 pycom1739g00020 pycom1739g00050 pycom17g12970 pycom17g17960 pycom17g18300 pycom17g18650 pycom2172g00020 pycom2438g00020 pycom436g00370 pycom436g00390 pycom576g00050 pycom76g00020
rosa_chinensis	RchiOBHm_Chr1g0320811 RchiOBHm_Chr2g0135321 RchiOBHm_Chr3g0485721 RchiOBHm_Chr7g0236571
rosa_multiflora	Rmu_sc0000185.1_g000007 Rmu_sc0002094.1_g000030 Rmu_sc0002764.1_g000007 Rmu_sc0002809.1_g000014 Rmu_sc0003005.1_g000007 Rmu_sc0003798.1_g000005 Rmu_sc0004646.1_g000027 Rmu_sc0004665.1_g000009 Rmu_sc0004818.1_g000001 Rmu_sc0004988.1_g000031 Rmu_sc0006373.1_g000007 Rmu_sc0007142.1_g000015 Rmu_sc0009930.1_g000001 Rmu_sc0011451.1_g000001 Rmu_sc0020424.1_g000001 Rmu_sc0036944.1_g000001 Rmu_ssc0000062.1_g000010
rosa_roxburghii	Rroxscaffold_2G00123930 Rroxscaffold_3G00231480 Rroxscaffold_6G00413880
rosa_rugosa	Rorug04G0084800
rosa_samantha	Rh3BG150500 Rh6DG232400
rosa_wichuraiana	Rw2G018400 Rw3G027860 Rw4G021220 Rw6G020670 Rw6G037970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	111
AciI	CCGC	1 cut(s)	445
AcsI	RAATTY	1 cut(s)	425
AgsI	TTSAA	2 cut(s)	157, 305
AjnI	CCWGG	1 cut(s)	292
AjuI	GAANNNNNNNTTGG	2 cut(s)	42, 74
AluBI	AGCT	1 cut(s)	461
AluI	AGCT	1 cut(s)	461
Alw21I	GWGCWC	1 cut(s)	168
AlwNI	CAGNNNCTG	1 cut(s)	380
ApeKI	GCWGC	1 cut(s)	401
ApoI	RAATTY	1 cut(s)	425
AspA2I	CCTAGG	1 cut(s)	200
AvrII	CCTAGG	1 cut(s)	200
BbsI	GAAGAC	1 cut(s)	69
Bbv12I	GWGCWC	1 cut(s)	168
BbvI	GCAGC	1 cut(s)	413
BciT130I	CCWGG	1 cut(s)	294
BclI	TGATCA	1 cut(s)	391
BfaI	CTAG	2 cut(s)	201, 482
BfmI	CTRYAG	1 cut(s)	488
BglII	AGATCT	1 cut(s)	484
BisI	GCNGC	1 cut(s)	402
BlnI	CCTAGG	1 cut(s)	200
BlpI	GCTNAGC	1 cut(s)	240
BlsI	GCNGC	1 cut(s)	403
Bme1390I	CCNGG	1 cut(s)	294
BmrFI	CCNGG	1 cut(s)	294
BmsI	GCATC	3 cut(s)	101, 232, 261
BpiI	GAAGAC	1 cut(s)	69
Bpu1102I	GCTNAGC	1 cut(s)	240
BsaAI	YACGTR	1 cut(s)	233
BsaJI	CCNNGG	1 cut(s)	200
BseBI	CCWGG	1 cut(s)	294
BseDI	CCNNGG	1 cut(s)	200
BseGI	GGATG	1 cut(s)	223
BseMII	CTCAG	2 cut(s)	33, 254
BseRI	GAGGAG	1 cut(s)	183
BseXI	GCAGC	1 cut(s)	413
BsgI	GTGCAG	1 cut(s)	213
BsiHKAI	GWGCWC	1 cut(s)	168
BslFI	GGGAC	1 cut(s)	461
BsmFI	GGGAC	1 cut(s)	461
BsmI	GAATGC	1 cut(s)	362
Bsp1286I	GDGCHC	1 cut(s)	168
Bsp143I	GATC	3 cut(s)	13, 391, 484
Bsp1720I	GCTNAGC	1 cut(s)	240
BspACI	CCGC	1 cut(s)	445
BspCNI	CTCAG	2 cut(s)	34, 253
BssECI	CCNNGG	1 cut(s)	200
BssMI	GATC	3 cut(s)	13, 391, 484
BssT1I	CCWWGG	1 cut(s)	200
Bst2UI	CCWGG	1 cut(s)	294
BstAPI	GCANNNNNTGC	2 cut(s)	236, 380
BstBAI	YACGTR	1 cut(s)	233
BstDEI	CTNAG	2 cut(s)	42, 240
BstF5I	GGATG	1 cut(s)	223
BstKTI	GATC	3 cut(s)	16, 394, 487
BstMBI	GATC	3 cut(s)	13, 391, 484
BstMWI	GCNNNNNNNGC	2 cut(s)	236, 380
BstNI	CCWGG	1 cut(s)	294
BstNSI	RCATGY	2 cut(s)	274, 356
BstSCI	CCNGG	1 cut(s)	292
BstSFI	CTRYAG	1 cut(s)	488
BstV1I	GCAGC	1 cut(s)	413
BstV2I	GAAGAC	1 cut(s)	69
BstX2I	RGATCY	1 cut(s)	484
BstYI	RGATCY	1 cut(s)	484
BtsCI	GGATG	1 cut(s)	223
CaiI	CAGNNNCTG	1 cut(s)	380
CviAII	CATG	5 cut(s)	106, 256, 271, 323, 353
CviJI	RGCY	6 cut(s)	40, 244, 404, 461, 466, 481
CviKI_1	RGCY	6 cut(s)	40, 244, 404, 461, 466, 481
DdeI	CTNAG	2 cut(s)	42, 240
DpnI	GATC	3 cut(s)	15, 393, 486
DpnII	GATC	3 cut(s)	13, 391, 484
Eco130I	CCWWGG	1 cut(s)	200
EcoRII	CCWGG	1 cut(s)	292
EcoT14I	CCWWGG	1 cut(s)	200
ErhI	CCWWGG	1 cut(s)	200
FaeI	CATG	5 cut(s)	109, 259, 274, 326, 356
FaqI	GGGAC	1 cut(s)	461
FatI	CATG	5 cut(s)	105, 255, 270, 322, 352
FauI	CCCGC	1 cut(s)	438
FauNDI	CATATG	1 cut(s)	346
FbaI	TGATCA	1 cut(s)	391
FblI	GTMKAC	1 cut(s)	111
Fnu4HI	GCNGC	1 cut(s)	402
FokI	GGATG	1 cut(s)	210
Fsp4HI	GCNGC	1 cut(s)	402
FspBI	CTAG	2 cut(s)	201, 482
GluI	GCNGC	1 cut(s)	402
Hin1II	CATG	5 cut(s)	109, 259, 274, 326, 356
HindIII	AAGCTT	1 cut(s)	459
HinfI	GANTC	1 cut(s)	74
Hpy166II	GTNNAC	3 cut(s)	103, 112, 133
Hpy8I	GTNNAC	3 cut(s)	103, 112, 133
Hpy99I	CGWCG	1 cut(s)	119
HpyAV	CCTTC	2 cut(s)	255, 320
HpyCH4IV	ACGT	1 cut(s)	232
HpyCH4V	TGCA	9 cut(s)	92, 211, 223, 230, 252, 317, 352, 383, 401
HpyF10VI	GCNNNNNNNGC	2 cut(s)	236, 380
HpyF3I	CTNAG	2 cut(s)	42, 240
HpySE526I	ACGT	1 cut(s)	232
Hsp92II	CATG	5 cut(s)	109, 259, 274, 326, 356
Ksp22I	TGATCA	1 cut(s)	391
Kzo9I	GATC	3 cut(s)	13, 391, 484
LpnPI	CCDG	5 cut(s)	54, 240, 279, 306, 327
Lsp1109I	GCAGC	1 cut(s)	413
LweI	GCATC	3 cut(s)	101, 232, 261
MaeI	CTAG	2 cut(s)	201, 482
MaeII	ACGT	1 cut(s)	232
MaeIII	GTNAC	2 cut(s)	258, 376
MalI	GATC	3 cut(s)	15, 393, 486
MboI	GATC	3 cut(s)	13, 391, 484
MboII	GAAGA	3 cut(s)	69, 170, 173
MflI	RGATCY	1 cut(s)	484
MhlI	GDGCHC	1 cut(s)	168
MluCI	AATT	2 cut(s)	64, 425
MlyI	GAGTC	1 cut(s)	83
MnlI	CCTC	3 cut(s)	201, 204, 361
MspR9I	CCNGG	1 cut(s)	294
Mva1269I	GAATGC	1 cut(s)	362
MvaI	CCWGG	1 cut(s)	294
MwoI	GCNNNNNNNGC	2 cut(s)	236, 380
NdeI	CATATG	1 cut(s)	346
NdeII	GATC	3 cut(s)	13, 391, 484
NlaIII	CATG	5 cut(s)	109, 259, 274, 326, 356
NspI	RCATGY	2 cut(s)	274, 356
PctI	GAATGC	1 cut(s)	362
PkrI	GCNGC	1 cut(s)	403
PleI	GAGTC	1 cut(s)	82
PpsI	GAGTC	1 cut(s)	82
Ppu21I	YACGTR	1 cut(s)	233
Psp6I	CCWGG	1 cut(s)	292
PspGI	CCWGG	1 cut(s)	292
PstNI	CAGNNNCTG	1 cut(s)	380
PsuI	RGATCY	1 cut(s)	484
SatI	GCNGC	1 cut(s)	402
Sau3AI	GATC	3 cut(s)	13, 391, 484
SchI	GAGTC	1 cut(s)	83
ScrFI	CCNGG	1 cut(s)	294
SduI	GDGCHC	1 cut(s)	168
SetI	ASST	7 cut(s)	25, 193, 202, 235, 268, 295, 463
SfaNI	GCATC	3 cut(s)	101, 232, 261
SfcI	CTRYAG	1 cut(s)	488
Sse9I	AATT	2 cut(s)	64, 425
SsiI	CCGC	1 cut(s)	445
SspMI	CTAG	2 cut(s)	201, 482
StyD4I	CCNGG	1 cut(s)	292
StyI	CCWWGG	1 cut(s)	200
TaiI	ACGT	1 cut(s)	235
TaqI	TCGA	2 cut(s)	80, 366
TasI	AATT	2 cut(s)	64, 425
TseI	GCWGC	1 cut(s)	401
TspDTI	ATGAA	2 cut(s)	311, 351
XapI	RAATTY	1 cut(s)	425
XceI	RCATGY	2 cut(s)	274, 356
XmaJI	CCTAGG	1 cut(s)	200
XmiI	GTMKAC	1 cut(s)	111
XspI	CTAG	2 cut(s)	201, 482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.