transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotrans_gag | PF03732 | 151 - 231 | 6e-11 | Retrotransposon gag protein |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 184 |
| Acc16I | TGCGCA | 1 cut(s) | 180 |
| Acc36I | ACCTGC | 4 cut(s) | 184, 497, 511, 1704 |
| AccB1I | GGYRCC | 2 cut(s) | 1415, 2242 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 871 |
| AccBSI | CCGCTC | 1 cut(s) | 566 |
| AccI | GTMKAC | 2 cut(s) | 1140, 1495 |
| AciI | CCGC | 4 cut(s) | 122, 564, 1104, 1281 |
| AclI | AACGTT | 1 cut(s) | 484 |
| AclWI | GGATC | 7 cut(s) | 359, 372, 1089, 1156, 1661, 1937, 1950 |
| AcoI | YGGCCR | 2 cut(s) | 786, 2254 |
| AcsI | RAATTY | 2 cut(s) | 386, 1829 |
| AcuI | CTGAAG | 3 cut(s) | 240, 637, 1259 |
| AcyI | GRCGYC | 2 cut(s) | 1137, 2243 |
| AfaI | GTAC | 6 cut(s) | 344, 494, 826, 1064, 2142, 2148 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 871, 1133, 1168, 1451, 1657, 1795, 2252 |
| AflII | CTTAAG | 2 cut(s) | 1835, 1937 |
| AflIII | ACRYGT | 3 cut(s) | 894, 1059, 2149 |
| AgeI | ACCGGT | 1 cut(s) | 752 |
| AhlI | ACTAGT | 2 cut(s) | 95, 2143 |
| AjnI | CCWGG | 3 cut(s) | 289, 1153, 1411 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1359, 1391, 1739, 1771 |
| Alw21I | GWGCWC | 3 cut(s) | 1470, 1727, 1981 |
| Alw26I | GTCTC | 3 cut(s) | 1516, 1906, 2069 |
| Alw44I | GTGCAC | 1 cut(s) | 1977 |
| AlwI | GGATC | 7 cut(s) | 359, 372, 1089, 1156, 1661, 1937, 1950 |
| AoxI | GGCC | 5 cut(s) | 300, 786, 1034, 1884, 2254 |
| ApaLI | GTGCAC | 1 cut(s) | 1977 |
| ApeKI | GCWGC | 4 cut(s) | 319, 711, 1177, 1283 |
| ApoI | RAATTY | 2 cut(s) | 386, 1829 |
| AseI | ATTAAT | 3 cut(s) | 2022, 2162, 2232 |
| AsiGI | ACCGGT | 1 cut(s) | 752 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1862 |
| AspA2I | CCTAGG | 1 cut(s) | 2120 |
| AspLEI | GCGC | 2 cut(s) | 181, 2245 |
| AspS9I | GGNCC | 2 cut(s) | 1035, 1885 |
| AsuC2I | CCSGG | 2 cut(s) | 1071, 1947 |
| AsuHPI | GGTGA | 9 cut(s) | 165, 547, 1024, 1076, 1143, 1405, 1610, 2075, 2095 |
| AsuNHI | GCTAGC | 1 cut(s) | 2095 |
| AvrII | CCTAGG | 1 cut(s) | 2120 |
| AxyI | CCTNAGG | 3 cut(s) | 910, 936, 1446 |
| BaeGI | GKGCMC | 1 cut(s) | 1981 |
| BalI | TGGCCA | 1 cut(s) | 2256 |
| BamHI | GGATCC | 2 cut(s) | 364, 1942 |
| BanI | GGYRCC | 2 cut(s) | 1415, 2242 |
| BanII | GRGCYC | 2 cut(s) | 1470, 1727 |
| BauI | CACGAG | 1 cut(s) | 191 |
| Bbv12I | GWGCWC | 3 cut(s) | 1470, 1727, 1981 |
| BbvI | GCAGC | 4 cut(s) | 331, 723, 1189, 1295 |
| BceAI | ACGGC | 1 cut(s) | 135 |
| BciT130I | CCWGG | 3 cut(s) | 291, 1155, 1413 |
| BclI | TGATCA | 4 cut(s) | 964, 1627, 1990, 2085 |
| BcnI | CCSGG | 2 cut(s) | 1071, 1947 |
| BcoDI | GTCTC | 3 cut(s) | 1516, 1906, 2069 |
| BcuI | ACTAGT | 2 cut(s) | 95, 2143 |
| BfaI | CTAG | 8 cut(s) | 96, 1173, 1404, 1425, 2060, 2096, 2121, 2144 |
| BfmI | CTRYAG | 2 cut(s) | 504, 2172 |
| BfoI | RGCGCY | 1 cut(s) | 2246 |
| BfrI | CTTAAG | 2 cut(s) | 1835, 1937 |
| BfuAI | ACCTGC | 4 cut(s) | 184, 497, 511, 1704 |
| BisI | GCNGC | 4 cut(s) | 320, 712, 1178, 1284 |
| BlnI | CCTAGG | 1 cut(s) | 2120 |
| BlpI | GCTNAGC | 2 cut(s) | 1335, 1464 |
| BlsI | GCNGC | 4 cut(s) | 321, 713, 1179, 1285 |
| BmcAI | AGTACT | 1 cut(s) | 344 |
| Bme1390I | CCNGG | 5 cut(s) | 291, 1071, 1155, 1413, 1947 |
| BmgT120I | GGNCC | 2 cut(s) | 1035, 1885 |
| BmiI | GGNNCC | 6 cut(s) | 207, 366, 863, 1417, 1944, 2244 |
| BmrFI | CCNGG | 5 cut(s) | 291, 1071, 1155, 1413, 1947 |
| BmrI | ACTGGG | 1 cut(s) | 1629 |
| BmsI | GCATC | 6 cut(s) | 226, 466, 1271, 1315, 1386, 1789 |
| BmtI | GCTAGC | 1 cut(s) | 2099 |
| BmuI | ACTGGG | 1 cut(s) | 1629 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1330 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 1335, 1464 |
| BpuEI | CTTGAG | 4 cut(s) | 6, 1116, 1198, 2210 |
| BpuMI | CCSGG | 2 cut(s) | 1071, 1947 |
| Bsa29I | ATCGAT | 2 cut(s) | 1611, 2196 |
| BsaAI | YACGTR | 2 cut(s) | 1062, 2150 |
| BsaHI | GRCGYC | 2 cut(s) | 1137, 2243 |
| BsaJI | CCNNGG | 3 cut(s) | 39, 1224, 2120 |
| BsaWI | WCCGGW | 1 cut(s) | 752 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1393, 1423 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 871, 1133, 1168, 1451, 1657, 1795, 2252 |
| Bse118I | RCCGGY | 1 cut(s) | 752 |
| Bse1I | ACTGG | 3 cut(s) | 1600, 1624, 2007 |
| Bse21I | CCTNAGG | 3 cut(s) | 910, 936, 1446 |
| Bse3DI | GCAATG | 1 cut(s) | 922 |
| BseBI | CCWGG | 3 cut(s) | 291, 1155, 1413 |
| BseCI | ATCGAT | 2 cut(s) | 1611, 2196 |
| BseDI | CCNNGG | 3 cut(s) | 39, 1224, 2120 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 871, 1133, 1168, 1451, 1657, 1795, 2252 |
| BseMI | GCAATG | 1 cut(s) | 922 |
| BseMII | CTCAG | 9 cut(s) | 351, 454, 950, 993, 1293, 1349, 1455, 1832, 1917 |
| BseNI | ACTGG | 3 cut(s) | 1600, 1624, 2007 |
| BseRI | GAGGAG | 7 cut(s) | 161, 164, 167, 852, 1188, 1191, 1571 |
| BseSI | GKGCMC | 1 cut(s) | 1981 |
| BseXI | GCAGC | 4 cut(s) | 331, 723, 1189, 1295 |
| BsgI | GTGCAG | 1 cut(s) | 338 |
| BshFI | GGCC | 5 cut(s) | 302, 788, 1036, 1886, 2256 |
| BshNI | GGYRCC | 2 cut(s) | 1415, 2242 |
| BshTI | ACCGGT | 1 cut(s) | 752 |
| BshVI | ATCGAT | 2 cut(s) | 1611, 2196 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1470, 1727, 1981 |
| BsiSI | CCGG | 3 cut(s) | 753, 1070, 1947 |
| BslFI | GGGAC | 2 cut(s) | 624, 748 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 871, 1133, 1168, 1451, 1657, 1795, 2252 |
| BsmAI | GTCTC | 3 cut(s) | 1516, 1906, 2069 |
| BsmFI | GGGAC | 2 cut(s) | 624, 748 |
| BsmI | GAATGC | 2 cut(s) | 181, 910 |
| BsnI | GGCC | 5 cut(s) | 302, 788, 1036, 1886, 2256 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1470, 1727, 1981 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 1335, 1464 |
| BspACI | CCGC | 4 cut(s) | 122, 564, 1104, 1281 |
| BspANI | GGCC | 5 cut(s) | 302, 788, 1036, 1886, 2256 |
| BspCNI | CTCAG | 9 cut(s) | 352, 453, 949, 994, 1294, 1348, 1456, 1831, 1916 |
| BspDI | ATCGAT | 2 cut(s) | 1611, 2196 |
| BspHI | TCATGA | 2 cut(s) | 741, 1719 |
| BspLI | GGNNCC | 6 cut(s) | 207, 366, 863, 1417, 1944, 2244 |
| BspMAI | CTGCAG | 2 cut(s) | 508, 2176 |
| BspMI | ACCTGC | 4 cut(s) | 184, 497, 511, 1704 |
| BspOI | GCTAGC | 1 cut(s) | 2099 |
| BspPI | GGATC | 7 cut(s) | 359, 372, 1089, 1156, 1661, 1937, 1950 |
| BspT107I | GGYRCC | 2 cut(s) | 1415, 2242 |
| BspTI | CTTAAG | 2 cut(s) | 1835, 1937 |
| BsrBI | CCGCTC | 1 cut(s) | 566 |
| BsrDI | GCAATG | 1 cut(s) | 922 |
| BsrFI | RCCGGY | 1 cut(s) | 752 |
| BsrI | ACTGG | 3 cut(s) | 1600, 1624, 2007 |
| BssAI | RCCGGY | 1 cut(s) | 752 |
| BssECI | CCNNGG | 3 cut(s) | 39, 1224, 2120 |
| BssNI | GRCGYC | 2 cut(s) | 1137, 2243 |
| BssSI | CACGAG | 1 cut(s) | 191 |
| BssT1I | CCWWGG | 3 cut(s) | 39, 1224, 2120 |
| Bst2BI | CACGAG | 1 cut(s) | 191 |
| Bst2UI | CCWGG | 3 cut(s) | 291, 1155, 1413 |
| Bst4CI | ACNGT | 1 cut(s) | 1393 |
| Bst6I | CTCTTC | 4 cut(s) | 195, 1542, 1737, 1797 |
| BstACI | GRCGYC | 2 cut(s) | 1137, 2243 |
| BstAFI | CTTAAG | 2 cut(s) | 1835, 1937 |
| BstBAI | YACGTR | 2 cut(s) | 1062, 2150 |
| BstC8I | GCNNGC | 2 cut(s) | 2097, 2172 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1131 |
| BstH2I | RGCGCY | 1 cut(s) | 2246 |
| BstHHI | GCGC | 2 cut(s) | 181, 2245 |
| BstMAI | GTCTC | 3 cut(s) | 1516, 1906, 2069 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1378 |
| BstNI | CCWGG | 3 cut(s) | 291, 1155, 1413 |
| BstNSI | RCATGY | 2 cut(s) | 729, 898 |
| BstSCI | CCNGG | 5 cut(s) | 289, 1069, 1153, 1411, 1945 |
| BstSFI | CTRYAG | 2 cut(s) | 504, 2172 |
| BstSLI | GKGCMC | 1 cut(s) | 1981 |
| BstV1I | GCAGC | 4 cut(s) | 331, 723, 1189, 1295 |
| BstX2I | RGATCY | 3 cut(s) | 364, 1666, 1942 |
| BstYI | RGATCY | 3 cut(s) | 364, 1666, 1942 |
| Bsu15I | ATCGAT | 2 cut(s) | 1611, 2196 |
| Bsu36I | CCTNAGG | 3 cut(s) | 910, 936, 1446 |
| BsuRI | GGCC | 5 cut(s) | 302, 788, 1036, 1886, 2256 |
| BsuTUI | ATCGAT | 2 cut(s) | 1611, 2196 |
| BtsI | GCAGTG | 1 cut(s) | 1257 |
| BtsIMutI | CAGTG | 3 cut(s) | 1257, 1593, 1617 |
| BveI | ACCTGC | 4 cut(s) | 184, 497, 511, 1704 |
| Cac8I | GCNNGC | 2 cut(s) | 2097, 2172 |
| CciI | TCATGA | 2 cut(s) | 741, 1719 |
| CfoI | GCGC | 2 cut(s) | 181, 2245 |
| Cfr10I | RCCGGY | 1 cut(s) | 752 |
| Cfr13I | GGNCC | 2 cut(s) | 1035, 1885 |
| ClaI | ATCGAT | 2 cut(s) | 1611, 2196 |
| CseI | GACGC | 1 cut(s) | 1126 |
| Csp6I | GTAC | 6 cut(s) | 343, 493, 825, 1063, 2141, 2147 |
| CspAI | ACCGGT | 1 cut(s) | 752 |
| CviQI | GTAC | 6 cut(s) | 343, 493, 825, 1063, 2141, 2147 |
| DinI | GGCGCC | 1 cut(s) | 2244 |
| EaeI | YGGCCR | 2 cut(s) | 786, 2254 |
| Eam1104I | CTCTTC | 4 cut(s) | 195, 1542, 1737, 1797 |
| EarI | CTCTTC | 4 cut(s) | 195, 1542, 1737, 1797 |
| Ecl136II | GAGCTC | 2 cut(s) | 1468, 1725 |
| Eco130I | CCWWGG | 3 cut(s) | 39, 1224, 2120 |
| Eco147I | AGGCCT | 1 cut(s) | 302 |
| Eco24I | GRGCYC | 2 cut(s) | 1470, 1727 |
| Eco53kI | GAGCTC | 2 cut(s) | 1468, 1725 |
| Eco57I | CTGAAG | 3 cut(s) | 240, 637, 1259 |
| Eco81I | CCTNAGG | 3 cut(s) | 910, 936, 1446 |
| EcoICRI | GAGCTC | 2 cut(s) | 1468, 1725 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1131 |
| EcoRI | GAATTC | 1 cut(s) | 386 |
| EcoRII | CCWGG | 3 cut(s) | 289, 1153, 1411 |
| EcoT14I | CCWWGG | 3 cut(s) | 39, 1224, 2120 |
| EcoT22I | ATGCAT | 1 cut(s) | 275 |
| EcoT38I | GRGCYC | 2 cut(s) | 1470, 1727 |
| EgeI | GGCGCC | 1 cut(s) | 2244 |
| EheI | GGCGCC | 1 cut(s) | 2244 |
| ErhI | CCWWGG | 3 cut(s) | 39, 1224, 2120 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 15, 47, 1739, 1771 |
| FaqI | GGGAC | 2 cut(s) | 624, 748 |
| FauI | CCCGC | 2 cut(s) | 115, 571 |
| FbaI | TGATCA | 4 cut(s) | 964, 1627, 1990, 2085 |
| FblI | GTMKAC | 2 cut(s) | 1140, 1495 |
| Fnu4HI | GCNGC | 4 cut(s) | 320, 712, 1178, 1284 |
| FriOI | GRGCYC | 2 cut(s) | 1470, 1727 |
| Fsp4HI | GCNGC | 4 cut(s) | 320, 712, 1178, 1284 |
| FspBI | CTAG | 8 cut(s) | 96, 1173, 1404, 1425, 2060, 2096, 2121, 2144 |
| FspI | TGCGCA | 1 cut(s) | 180 |
| GlaI | GCGC | 2 cut(s) | 180, 2244 |
| GluI | GCNGC | 4 cut(s) | 320, 712, 1178, 1284 |
| HaeII | RGCGCY | 1 cut(s) | 2246 |
| HaeIII | GGCC | 5 cut(s) | 302, 788, 1036, 1886, 2256 |
| HapII | CCGG | 3 cut(s) | 753, 1070, 1947 |
| HgaI | GACGC | 1 cut(s) | 1126 |
| HhaI | GCGC | 2 cut(s) | 181, 2245 |
| Hin1I | GRCGYC | 2 cut(s) | 1137, 2243 |
| Hin6I | GCGC | 2 cut(s) | 179, 2243 |
| HinP1I | GCGC | 2 cut(s) | 179, 2243 |
| HindIII | AAGCTT | 1 cut(s) | 1922 |
| HpaII | CCGG | 3 cut(s) | 753, 1070, 1947 |
| HphI | GGTGA | 9 cut(s) | 165, 547, 1024, 1076, 1143, 1405, 1610, 2075, 2095 |
| Hpy166II | GTNNAC | 5 cut(s) | 376, 1141, 1496, 1783, 1979 |
| Hpy188I | TCNGA | 9 cut(s) | 49, 249, 259, 361, 420, 660, 774, 964, 1003 |
| Hpy8I | GTNNAC | 5 cut(s) | 376, 1141, 1496, 1783, 1979 |
| HpyCH4III | ACNGT | 1 cut(s) | 1393 |
| HpyCH4IV | ACGT | 5 cut(s) | 484, 823, 1061, 1116, 2149 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1378 |
| HpySE526I | ACGT | 5 cut(s) | 484, 823, 1061, 1116, 2149 |
| Hsp92I | GRCGYC | 2 cut(s) | 1137, 2243 |
| HspAI | GCGC | 2 cut(s) | 179, 2243 |
| KasI | GGCGCC | 1 cut(s) | 2242 |
| Ksp22I | TGATCA | 4 cut(s) | 964, 1627, 1990, 2085 |
| LmnI | GCTCC | 4 cut(s) | 1455, 1558, 1840, 2012 |
| Lsp1109I | GCAGC | 4 cut(s) | 331, 723, 1189, 1295 |
| LweI | GCATC | 6 cut(s) | 226, 466, 1271, 1315, 1386, 1789 |
| MaeI | CTAG | 8 cut(s) | 96, 1173, 1404, 1425, 2060, 2096, 2121, 2144 |
| MaeII | ACGT | 5 cut(s) | 484, 823, 1061, 1116, 2149 |
| MaeIII | GTNAC | 4 cut(s) | 444, 498, 1687, 1759 |
| MbiI | CCGCTC | 1 cut(s) | 566 |
| MfeI | CAATTG | 1 cut(s) | 1499 |
| MflI | RGATCY | 3 cut(s) | 364, 1666, 1942 |
| MhlI | GDGCHC | 3 cut(s) | 1470, 1727, 1981 |
| MlsI | TGGCCA | 1 cut(s) | 2256 |
| MluNI | TGGCCA | 1 cut(s) | 2256 |
| Mly113I | GGCGCC | 1 cut(s) | 2243 |
| MlyI | GAGTC | 3 cut(s) | 210, 432, 1243 |
| MmeI | TCCRAC | 2 cut(s) | 272, 451 |
| Mox20I | TGGCCA | 1 cut(s) | 2256 |
| Mph1103I | ATGCAT | 1 cut(s) | 275 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1862 |
| MscI | TGGCCA | 1 cut(s) | 2256 |
| MslI | CAYNNNNRTG | 1 cut(s) | 899 |
| Msp20I | TGGCCA | 1 cut(s) | 2256 |
| MspA1I | CMGCKG | 1 cut(s) | 1907 |
| MspCI | CTTAAG | 2 cut(s) | 1835, 1937 |
| MspI | CCGG | 3 cut(s) | 753, 1070, 1947 |
| MspR9I | CCNGG | 5 cut(s) | 291, 1071, 1155, 1413, 1947 |
| MunI | CAATTG | 1 cut(s) | 1499 |
| Mva1269I | GAATGC | 2 cut(s) | 181, 910 |
| MvaI | CCWGG | 3 cut(s) | 291, 1155, 1413 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1378 |
| NarI | GGCGCC | 1 cut(s) | 2243 |
| NciI | CCSGG | 2 cut(s) | 1071, 1947 |
| NheI | GCTAGC | 1 cut(s) | 2095 |
| NlaIV | GGNNCC | 6 cut(s) | 207, 366, 863, 1417, 1944, 2244 |
| NsbI | TGCGCA | 1 cut(s) | 180 |
| NsiI | ATGCAT | 1 cut(s) | 275 |
| NspI | RCATGY | 2 cut(s) | 729, 898 |
| PagI | TCATGA | 2 cut(s) | 741, 1719 |
| PaqCI | CACCTGC | 1 cut(s) | 184 |
| PceI | AGGCCT | 1 cut(s) | 302 |
| PciI | ACATGT | 1 cut(s) | 894 |
| PctI | GAATGC | 2 cut(s) | 181, 910 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1862 |
| PfeI | GAWTC | 8 cut(s) | 44, 260, 595, 719, 854, 1158, 1306, 1960 |
| PflFI | GACNNNGTC | 1 cut(s) | 668 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 871 |
| PfoI | TCCNGGA | 2 cut(s) | 1069, 1945 |
| PinAI | ACCGGT | 1 cut(s) | 752 |
| PkrI | GCNGC | 4 cut(s) | 321, 713, 1179, 1285 |
| PleI | GAGTC | 3 cut(s) | 210, 432, 1243 |
| PluTI | GGCGCC | 1 cut(s) | 2246 |
| PpsI | GAGTC | 3 cut(s) | 210, 432, 1243 |
| Ppu21I | YACGTR | 2 cut(s) | 1062, 2150 |
| PscI | ACATGT | 1 cut(s) | 894 |
| PshBI | ATTAAT | 3 cut(s) | 2022, 2162, 2232 |
| Psp124BI | GAGCTC | 2 cut(s) | 1470, 1727 |
| Psp1406I | AACGTT | 1 cut(s) | 484 |
| Psp6I | CCWGG | 3 cut(s) | 289, 1153, 1411 |
| PspGI | CCWGG | 3 cut(s) | 289, 1153, 1411 |
| PspN4I | GGNNCC | 6 cut(s) | 207, 366, 863, 1417, 1944, 2244 |
| PspPI | GGNCC | 2 cut(s) | 1035, 1885 |
| PstI | CTGCAG | 2 cut(s) | 508, 2176 |
| PsuI | RGATCY | 3 cut(s) | 364, 1666, 1942 |
| PsyI | GACNNNGTC | 1 cut(s) | 668 |
| PvuII | CAGCTG | 1 cut(s) | 1907 |
| RsaI | GTAC | 6 cut(s) | 344, 494, 826, 1064, 2142, 2148 |
| RsaNI | GTAC | 6 cut(s) | 343, 493, 825, 1063, 2141, 2147 |
| RseI | CAYNNNNRTG | 1 cut(s) | 899 |
| SacI | GAGCTC | 2 cut(s) | 1470, 1727 |
| SatI | GCNGC | 4 cut(s) | 320, 712, 1178, 1284 |
| Sau96I | GGNCC | 2 cut(s) | 1035, 1885 |
| SbfI | CCTGCAGG | 1 cut(s) | 508 |
| ScaI | AGTACT | 1 cut(s) | 344 |
| SchI | GAGTC | 3 cut(s) | 210, 432, 1243 |
| ScrFI | CCNGG | 5 cut(s) | 291, 1071, 1155, 1413, 1947 |
| SdaI | CCTGCAGG | 1 cut(s) | 508 |
| SduI | GDGCHC | 3 cut(s) | 1470, 1727, 1981 |
| SfaNI | GCATC | 6 cut(s) | 226, 466, 1271, 1315, 1386, 1789 |
| SfcI | CTRYAG | 2 cut(s) | 504, 2172 |
| SfoI | GGCGCC | 1 cut(s) | 2244 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 899 |
| SmlI | CTYRAG | 6 cut(s) | 21, 1131, 1213, 1835, 1937, 2189 |
| SmoI | CTYRAG | 6 cut(s) | 21, 1131, 1213, 1835, 1937, 2189 |
| SpeI | ACTAGT | 2 cut(s) | 95, 2143 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 508 |
| SseBI | AGGCCT | 1 cut(s) | 302 |
| SsiI | CCGC | 4 cut(s) | 122, 564, 1104, 1281 |
| SspDI | GGCGCC | 1 cut(s) | 2242 |
| SspI | AATATT | 1 cut(s) | 557 |
| SspMI | CTAG | 8 cut(s) | 96, 1173, 1404, 1425, 2060, 2096, 2121, 2144 |
| SstI | GAGCTC | 2 cut(s) | 1470, 1727 |
| StuI | AGGCCT | 1 cut(s) | 302 |
| StyD4I | CCNGG | 5 cut(s) | 289, 1069, 1153, 1411, 1945 |
| StyI | CCWWGG | 3 cut(s) | 39, 1224, 2120 |
| TaaI | ACNGT | 1 cut(s) | 1393 |
| TaiI | ACGT | 5 cut(s) | 487, 826, 1064, 1119, 2152 |
| TaqI | TCGA | 8 cut(s) | 71, 219, 852, 1055, 1123, 1611, 2018, 2196 |
| TatI | WGTACW | 3 cut(s) | 342, 492, 2140 |
| TfiI | GAWTC | 8 cut(s) | 44, 260, 595, 719, 854, 1158, 1306, 1960 |
| TscAI | CASTG | 3 cut(s) | 1264, 1600, 1624 |
| TseI | GCWGC | 4 cut(s) | 319, 711, 1177, 1283 |
| TspDTI | ATGAA | 9 cut(s) | 730, 758, 861, 917, 1279, 1628, 1683, 1708, 2240 |
| TspGWI | ACGGA | 2 cut(s) | 1085, 1757 |
| TspRI | CASTG | 3 cut(s) | 1264, 1600, 1624 |
| Tth111I | GACNNNGTC | 1 cut(s) | 668 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 871 |
| Vha464I | CTTAAG | 2 cut(s) | 1835, 1937 |
| VneI | GTGCAC | 1 cut(s) | 1977 |
| VspI | ATTAAT | 3 cut(s) | 2022, 2162, 2232 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1131 |
| XapI | RAATTY | 2 cut(s) | 386, 1829 |
| XceI | RCATGY | 2 cut(s) | 729, 898 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1095 |
| XmaJI | CCTAGG | 1 cut(s) | 2120 |
| XmiI | GTMKAC | 2 cut(s) | 1140, 1495 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1862 |
| XspI | CTAG | 8 cut(s) | 96, 1173, 1404, 1425, 2060, 2096, 2121, 2144 |
| ZrmI | AGTACT | 1 cut(s) | 344 |
| Zsp2I | ATGCAT | 1 cut(s) | 275 |