pycom10g06320

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0000437
Physical Location & Seq
Forward (+)
7254228 .. 7256676
2449 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g06320.2

Sequence Viewer

Length: 642 bp
ATGGCCGTGGATAATCGAACCATTAAAGAGCTTTCTGCCTCAGGTTTGGCCAATGCAGCCCCTCTTTGCATTCAATACCCCGCGGCTGCCCAAGACAAGACCGATGAATTCGAATTGAAGTCAAGCTTGTTGCACCACATTCCGAAGTACCATGGGCTTTCCATGGAAGATCCCAACAAGCATCTCAAGGAGTTCGAGGTTGTTTGTTCGAGCATGACACCCATAAATGTCGATGGGAACATTCTGATGATGAAGGCTTTTCCATTCTCTCTTGTGGAAAAGGCTAAGGATTGGCTTTATGAATTGGCACCCGGGACCGTTACTTCTTGGGAGAGCATGAAGAGAGCCTTCTTGGAGAAGTTCTTCCCTACTTCAAAAGTCATTCTCTTGAGGAAGAAAATTAGCGGAATCCAACAAAGTCAAGGAGAATCTTTTCCGGTAAGTTTCTCGATTCTTTGGAGAGGGATACACTTGAAACAACAATTGCACAAGGAATTGGGCAAAAATCTGGTTTTGCCGTGCCTAGAAGTGAAGATGAGGCCGAGATGGTCGCTGCACTTGAGTCATTGCCACAACACTTTGGTAAGCCTTCCAACCCAATTTCAATTTCAGTTTCCACTAATAAGTTGTTACCCTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotrans_gag

Protein Analysis

214

Amino Acids

24.28

Weight (kDa)

8.93

Isoelectric Point (pI)

46.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000437)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G06105
fragaria_vesca FvH4_1g09709 FvH4_4g02101 FvH4_4g08975 FvH4_6g23372 FvH4_6g39851 FvH4_c1g00300
malus_domestica MD01G1176100.v1.1 MD09G1284900.v1.1 MD15G1306600.v1.1
prunus_persica Prupe.1G227700_v2.0.a1
pyrus_communis pycom01g00630 pycom01g01020 pycom01g01690 pycom01g01760 pycom01g04190 pycom01g04400 pycom02g18130 pycom03g10160 pycom05g06370 pycom05g08930 pycom06g05590 pycom10g06320 pycom11g14330 pycom11g15320 pycom11g16240 pycom12416g00050 pycom12420g00010 pycom12420g00120 pycom12426g00180 pycom12426g00710 pycom12531g00010 pycom1256g00020 pycom1256g00050 pycom1341g00030 pycom1353g00030 pycom13g23070 pycom13g23210 pycom13g26260 pycom13g26370 pycom13g26470 pycom13g26980 pycom14g08550 pycom14g08850 pycom1534g00040 pycom15g28760 pycom15g31230 pycom1604g00040 pycom16g21900 pycom16g26030 pycom1739g00020 pycom1739g00050 pycom17g12970 pycom17g17960 pycom17g18300 pycom17g18650 pycom2172g00020 pycom2438g00020 pycom436g00370 pycom436g00390 pycom576g00050 pycom76g00020
rosa_chinensis RchiOBHm_Chr1g0320811 RchiOBHm_Chr2g0135321 RchiOBHm_Chr3g0485721 RchiOBHm_Chr7g0236571
rosa_multiflora Rmu_sc0000185.1_g000007 Rmu_sc0002094.1_g000030 Rmu_sc0002764.1_g000007 Rmu_sc0002809.1_g000014 Rmu_sc0003005.1_g000007 Rmu_sc0003798.1_g000005 Rmu_sc0004646.1_g000027 Rmu_sc0004665.1_g000009 Rmu_sc0004818.1_g000001 Rmu_sc0004988.1_g000031 Rmu_sc0006373.1_g000007 Rmu_sc0007142.1_g000015 Rmu_sc0009930.1_g000001 Rmu_sc0011451.1_g000001 Rmu_sc0020424.1_g000001 Rmu_sc0036944.1_g000001 Rmu_ssc0000062.1_g000010
rosa_roxburghii Rroxscaffold_2G00123930 Rroxscaffold_3G00231480 Rroxscaffold_6G00413880
rosa_rugosa Rorug04G0084800
rosa_samantha Rh3BG150500 Rh6DG232400
rosa_wichuraiana Rw2G018400 Rw3G027860 Rw4G021220 Rw6G020670 Rw6G037970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 307
AccII CGCG 1 cut(s) 83
AciI CCGC 3 cut(s) 81, 83, 405
AclWI GGATC 1 cut(s) 164
AcoI YGGCCR 2 cut(s) 3, 48
AcsI RAATTY 1 cut(s) 107
AfaI GTAC 1 cut(s) 149
AgsI TTSAA 5 cut(s) 74, 118, 375, 475, 605
AjuI GAANNNNNNNTTGG 2 cut(s) 591, 623
AluBI AGCT 2 cut(s) 31, 126
AluI AGCT 2 cut(s) 31, 126
AlwI GGATC 1 cut(s) 164
Ama87I CYCGRG 1 cut(s) 311
AoxI GGCC 3 cut(s) 3, 48, 539
ApeKI GCWGC 3 cut(s) 56, 86, 553
ApoI RAATTY 1 cut(s) 107
Asp700I GAANNNNTTC 2 cut(s) 362, 432
AspS9I GGNCC 1 cut(s) 315
AsuC2I CCSGG 2 cut(s) 312, 313
AsuII TTCGAA 1 cut(s) 111
AvaI CYCGRG 1 cut(s) 311
AvaII GGWCC 1 cut(s) 315
AxyI CCTNAGG 1 cut(s) 40
BalI TGGCCA 1 cut(s) 50
BanI GGYRCC 1 cut(s) 307
BbvI GCAGC 3 cut(s) 68, 73, 540
BccI CCATC 2 cut(s) 227, 540
BceAI ACGGC 1 cut(s) 502
BciVI GTATCC 1 cut(s) 459
BcnI CCSGG 2 cut(s) 312, 313
BfaI CTAG 1 cut(s) 524
BfuI GTATCC 1 cut(s) 459
BisI GCNGC 4 cut(s) 57, 84, 87, 554
BlsI GCNGC 4 cut(s) 58, 85, 88, 555
Bme1390I CCNGG 2 cut(s) 312, 313
Bme18I GGWCC 1 cut(s) 315
BmeT110I CYCGRG 1 cut(s) 311
BmgT120I GGNCC 1 cut(s) 315
BmiI GGNNCC 2 cut(s) 309, 316
BmrFI CCNGG 2 cut(s) 312, 313
BmsI GCATC 1 cut(s) 190
Bpu10I CCTNAGC 1 cut(s) 285
Bpu14I TTCGAA 1 cut(s) 111
BpuEI CTTGAG 3 cut(s) 170, 409, 580
BpuMI CCSGG 2 cut(s) 312, 313
BsaJI CCNNGG 5 cut(s) 6, 81, 151, 162, 311
BsaWI WCCGGW 1 cut(s) 436
Bse21I CCTNAGG 1 cut(s) 40
Bse3DI GCAATG 1 cut(s) 565
BseDI CCNNGG 5 cut(s) 6, 81, 151, 162, 311
BseMI GCAATG 1 cut(s) 565
BseMII CTCAG 1 cut(s) 54
BseXI GCAGC 3 cut(s) 68, 73, 540
BsgI GTGCAG 1 cut(s) 539
Bsh1236I CGCG 1 cut(s) 83
BshFI GGCC 3 cut(s) 5, 50, 541
BshNI GGYRCC 1 cut(s) 307
BsiHKCI CYCGRG 1 cut(s) 311
BsiSI CCGG 2 cut(s) 312, 437
BslFI GGGAC 1 cut(s) 328
BsmFI GGGAC 1 cut(s) 328
BsmI GAATGC 1 cut(s) 69
BsnI GGCC 3 cut(s) 5, 50, 541
BsoBI CYCGRG 1 cut(s) 311
Bsp119I TTCGAA 1 cut(s) 111
Bsp143I GATC 1 cut(s) 169
Bsp19I CCATGG 2 cut(s) 151, 162
BspACI CCGC 3 cut(s) 81, 83, 405
BspANI GGCC 3 cut(s) 5, 50, 541
BspCNI CTCAG 1 cut(s) 53
BspFNI CGCG 1 cut(s) 83
BspLI GGNNCC 2 cut(s) 309, 316
BspPI GGATC 1 cut(s) 164
BspT104I TTCGAA 1 cut(s) 111
BspT107I GGYRCC 1 cut(s) 307
BsrDI GCAATG 1 cut(s) 565
BssECI CCNNGG 5 cut(s) 6, 81, 151, 162, 311
BssMI GATC 1 cut(s) 169
BssT1I CCWWGG 2 cut(s) 151, 162
Bst4CI ACNGT 1 cut(s) 319
Bst6I CTCTTC 1 cut(s) 335
BstBI TTCGAA 1 cut(s) 111
BstDEI CTNAG 3 cut(s) 40, 285, 636
BstDSI CCRYGG 4 cut(s) 6, 81, 151, 162
BstFNI CGCG 1 cut(s) 83
BstKTI GATC 1 cut(s) 172
BstMBI GATC 1 cut(s) 169
BstMWI GCNNNNNNNGC 1 cut(s) 56
BstSCI CCNGG 2 cut(s) 310, 311
BstUI CGCG 1 cut(s) 83
BstV1I GCAGC 3 cut(s) 68, 73, 540
BstX2I RGATCY 1 cut(s) 169
BstYI RGATCY 1 cut(s) 169
Bsu36I CCTNAGG 1 cut(s) 40
BsuI GTATCC 1 cut(s) 459
BsuRI GGCC 3 cut(s) 5, 50, 541
BtgI CCRYGG 4 cut(s) 6, 81, 151, 162
Cfr13I GGNCC 1 cut(s) 315
Cfr42I CCGCGG 1 cut(s) 84
Cfr9I CCCGGG 1 cut(s) 311
Csp6I GTAC 1 cut(s) 148
CviAII CATG 4 cut(s) 152, 163, 214, 337
CviQI GTAC 1 cut(s) 148
DdeI CTNAG 3 cut(s) 40, 285, 636
DpnI GATC 1 cut(s) 171
DpnII GATC 1 cut(s) 169
EaeI YGGCCR 2 cut(s) 3, 48
Eam1104I CTCTTC 1 cut(s) 335
EarI CTCTTC 1 cut(s) 335
Eco130I CCWWGG 2 cut(s) 151, 162
Eco47I GGWCC 1 cut(s) 315
Eco81I CCTNAGG 1 cut(s) 40
Eco88I CYCGRG 1 cut(s) 311
EcoRI GAATTC 1 cut(s) 107
EcoT14I CCWWGG 2 cut(s) 151, 162
ErhI CCWWGG 2 cut(s) 151, 162
FaeI CATG 4 cut(s) 155, 166, 217, 340
FaiI YATR 6 cut(s) 153, 164, 215, 224, 300, 338
FalI AAGNNNNNCTT 4 cut(s) 110, 142, 332, 364
FaqI GGGAC 1 cut(s) 328
FatI CATG 4 cut(s) 151, 162, 213, 336
FauI CCCGC 1 cut(s) 88
Fnu4HI GCNGC 4 cut(s) 57, 84, 87, 554
Fsp4HI GCNGC 4 cut(s) 57, 84, 87, 554
FspBI CTAG 1 cut(s) 524
GluI GCNGC 4 cut(s) 57, 84, 87, 554
HaeIII GGCC 3 cut(s) 5, 50, 541
HapII CCGG 2 cut(s) 312, 437
Hin1II CATG 4 cut(s) 155, 166, 217, 340
HindIII AAGCTT 1 cut(s) 124
HinfI GANTC 4 cut(s) 408, 428, 451, 562
HpaII CCGG 2 cut(s) 312, 437
Hpy188I TCNGA 2 cut(s) 144, 246
Hpy188III TCNNGA 2 cut(s) 388, 448
HpyAV CCTTC 3 cut(s) 247, 358, 599
HpyCH4III ACNGT 1 cut(s) 319
HpyCH4V TGCA 5 cut(s) 56, 69, 133, 487, 556
HpyF10VI GCNNNNNNNGC 1 cut(s) 56
HpyF3I CTNAG 3 cut(s) 40, 285, 636
Hsp92II CATG 4 cut(s) 155, 166, 217, 340
KspI CCGCGG 1 cut(s) 84
Kzo9I GATC 1 cut(s) 169
LpnPI CCDG 4 cut(s) 27, 325, 450, 494
Lsp1109I GCAGC 3 cut(s) 68, 73, 540
LweI GCATC 1 cut(s) 190
MaeI CTAG 1 cut(s) 524
MaeIII GTNAC 2 cut(s) 319, 629
MalI GATC 1 cut(s) 171
MboI GATC 1 cut(s) 169
MboII GAAGA 5 cut(s) 179, 352, 355, 406, 544
MfeI CAATTG 1 cut(s) 482
MflI RGATCY 1 cut(s) 169
MlsI TGGCCA 1 cut(s) 50
MluCI AATT 8 cut(s) 107, 113, 302, 399, 482, 494, 599, 605
MluNI TGGCCA 1 cut(s) 50
MlyI GAGTC 1 cut(s) 571
MmeI TCCRAC 2 cut(s) 436, 617
MnlI CCTC 6 cut(s) 49, 72, 190, 384, 455, 531
Mox20I TGGCCA 1 cut(s) 50
MroXI GAANNNNTTC 2 cut(s) 362, 432
MscI TGGCCA 1 cut(s) 50
MseI TTAA 1 cut(s) 24
MslI CAYNNNNRTG 1 cut(s) 245
Msp20I TGGCCA 1 cut(s) 50
MspA1I CMGCKG 1 cut(s) 83
MspI CCGG 2 cut(s) 312, 437
MspR9I CCNGG 2 cut(s) 312, 313
MunI CAATTG 1 cut(s) 482
Mva1269I GAATGC 1 cut(s) 69
MvnI CGCG 1 cut(s) 83
MwoI GCNNNNNNNGC 1 cut(s) 56
NciI CCSGG 2 cut(s) 312, 313
NcoI CCATGG 2 cut(s) 151, 162
NdeII GATC 1 cut(s) 169
NlaIII CATG 4 cut(s) 155, 166, 217, 340
NlaIV GGNNCC 2 cut(s) 309, 316
NmeAIII GCCGAG 1 cut(s) 567
NspV TTCGAA 1 cut(s) 111
PctI GAATGC 1 cut(s) 69
PdmI GAANNNNTTC 2 cut(s) 362, 432
PfeI GAWTC 3 cut(s) 408, 428, 451
PkrI GCNGC 4 cut(s) 58, 85, 88, 555
PleI GAGTC 1 cut(s) 570
PpsI GAGTC 1 cut(s) 570
PspN4I GGNNCC 2 cut(s) 309, 316
PspPI GGNCC 1 cut(s) 315
PsuI RGATCY 1 cut(s) 169
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
RseI CAYNNNNRTG 1 cut(s) 245
SacII CCGCGG 1 cut(s) 84
SaqAI TTAA 1 cut(s) 24
SatI GCNGC 4 cut(s) 57, 84, 87, 554
Sau3AI GATC 1 cut(s) 169
Sau96I GGNCC 1 cut(s) 315
SchI GAGTC 1 cut(s) 571
ScrFI CCNGG 2 cut(s) 312, 313
SetI ASST 4 cut(s) 33, 46, 128, 201
SfaNI GCATC 1 cut(s) 190
Sfr303I CCGCGG 1 cut(s) 84
SfuI TTCGAA 1 cut(s) 111
SgrBI CCGCGG 1 cut(s) 84
SinI GGWCC 1 cut(s) 315
SmaI CCCGGG 1 cut(s) 313
SmiMI CAYNNNNRTG 1 cut(s) 245
SmlI CTYRAG 3 cut(s) 185, 388, 559
SmoI CTYRAG 3 cut(s) 185, 388, 559
Sse9I AATT 8 cut(s) 107, 113, 302, 399, 482, 494, 599, 605
SsiI CCGC 3 cut(s) 81, 83, 405
SspMI CTAG 1 cut(s) 524
StyD4I CCNGG 2 cut(s) 310, 311
StyI CCWWGG 2 cut(s) 151, 162
TaaI ACNGT 1 cut(s) 319
TaqI TCGA 6 cut(s) 16, 111, 195, 209, 231, 449
TaqII GACCGA 1 cut(s) 116
TasI AATT 8 cut(s) 107, 113, 302, 399, 482, 494, 599, 605
TauI GCSGC 1 cut(s) 86
TfiI GAWTC 3 cut(s) 408, 428, 451
Tru1I TTAA 1 cut(s) 24
Tru9I TTAA 1 cut(s) 24
TseI GCWGC 3 cut(s) 56, 86, 553
TspDTI ATGAA 4 cut(s) 120, 266, 315, 353
TspMI CCCGGG 1 cut(s) 311
VpaK11BI GGWCC 1 cut(s) 315
XapI RAATTY 1 cut(s) 107
XmaI CCCGGG 1 cut(s) 311
XmnI GAANNNNTTC 2 cut(s) 362, 432
XspI CTAG 1 cut(s) 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.