pycom13g26370

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0000437
Physical Location & Seq
Forward (+)
23029642 .. 23030835
1194 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g26370.3

Sequence Viewer

Length: 828 bp
ATGGACTTAGTTGAGCAATGTACATTAGTTGTTGATTCATTTATTTGTGTTTACTTCATTTTCTCATGCTTTCAAGTTACAACAACAAATCTTTTGTTTAGTTTGATTCATTTCTTAGAGTTCTTTCGACACCCTTGCTTATGCCATTATACTAAATATATTCTAGCATTAGGAAGGAAATATACATCAACAAAAATGGCGCCGTTGCCGGGGACTGATTTCATAGTGTCAAGGTTCATAACTTGTGTGGAAAAGAATCCCTTAGCCATTCCATTATCCATTGGTTTACATCAATTTGCTTTACAATCTGCTTTCGTTATAATCTGTCCATTTAATTGCATTTCGTCCAAATACAATTTCTCCCCATATTTTCTCAAACCTAATTTTCGTCCAAAATTGAGTTTAGTGTCAAAACTGCCCAGTTTCTGTTTTGAGTCCTTTGAGTCCTTTCAAACATTTTTAAGTTTATTCTTGTTCATTTCATTGTTGTTTTATATGTCAAATAGACTTGTTGAGTTAGGCCAAAGAATTGAACGGTTGAAGGGCCACACTTTGGACAACTTTGTGCCATCAAGTTCATCCCTAATCCGTGAGGAAGAGGAAAGGACTTCACCTAGTTCAACAAGTAAAGGATCTGAGCAATTTGATTGGGAAAGAGAGGAAGAGATGGCGGGCAACCAAGATGAACTTAGAGCTTTGGAGGACTTTGCTCAACCAATCATACCAAATTCACCATCATGCATCTTGCTGCCCCCACAGAAGCTAGAAACTATGATCGATCAAATCTTCACATTTTCATATGTTTCCCTCATTTTATGGCTTACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 Retrotrans_gag rve

Protein Analysis

276

Amino Acids

31.74

Weight (kDa)

5.59

Isoelectric Point (pI)

54.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000437)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G06105
fragaria_vesca FvH4_1g09709 FvH4_4g02101 FvH4_4g08975 FvH4_6g23372 FvH4_6g39851 FvH4_c1g00300
malus_domestica MD01G1176100.v1.1 MD09G1284900.v1.1 MD15G1306600.v1.1
prunus_persica Prupe.1G227700_v2.0.a1
pyrus_communis pycom01g00630 pycom01g01020 pycom01g01690 pycom01g01760 pycom01g04190 pycom01g04400 pycom02g18130 pycom03g10160 pycom05g06370 pycom05g08930 pycom06g05590 pycom10g06320 pycom11g14330 pycom11g15320 pycom11g16240 pycom12416g00050 pycom12420g00010 pycom12420g00120 pycom12426g00180 pycom12426g00710 pycom12531g00010 pycom1256g00020 pycom1256g00050 pycom1341g00030 pycom1353g00030 pycom13g23070 pycom13g23210 pycom13g26260 pycom13g26370 pycom13g26470 pycom13g26980 pycom14g08550 pycom14g08850 pycom1534g00040 pycom15g28760 pycom15g31230 pycom1604g00040 pycom16g21900 pycom16g26030 pycom1739g00020 pycom1739g00050 pycom17g12970 pycom17g17960 pycom17g18300 pycom17g18650 pycom2172g00020 pycom2438g00020 pycom436g00370 pycom436g00390 pycom576g00050 pycom76g00020
rosa_chinensis RchiOBHm_Chr1g0320811 RchiOBHm_Chr2g0135321 RchiOBHm_Chr3g0485721 RchiOBHm_Chr7g0236571
rosa_multiflora Rmu_sc0000185.1_g000007 Rmu_sc0002094.1_g000030 Rmu_sc0002764.1_g000007 Rmu_sc0002809.1_g000014 Rmu_sc0003005.1_g000007 Rmu_sc0003798.1_g000005 Rmu_sc0004646.1_g000027 Rmu_sc0004665.1_g000009 Rmu_sc0004818.1_g000001 Rmu_sc0004988.1_g000031 Rmu_sc0006373.1_g000007 Rmu_sc0007142.1_g000015 Rmu_sc0009930.1_g000001 Rmu_sc0011451.1_g000001 Rmu_sc0020424.1_g000001 Rmu_sc0036944.1_g000001 Rmu_ssc0000062.1_g000010
rosa_roxburghii Rroxscaffold_2G00123930 Rroxscaffold_3G00231480 Rroxscaffold_6G00413880
rosa_rugosa Rorug04G0084800
rosa_samantha Rh3BG150500 Rh6DG232400
rosa_wichuraiana Rw2G018400 Rw3G027860 Rw4G021220 Rw6G020670 Rw6G037970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 320
AccB1I GGYRCC 1 cut(s) 199
AccB7I CCANNNNNTGG 1 cut(s) 553
AciI CCGC 1 cut(s) 671
AclWI GGATC 1 cut(s) 640
AcsI RAATTY 1 cut(s) 727
AcyI GRCGYC 1 cut(s) 200
AfaI GTAC 1 cut(s) 22
AfiI CCNNNNNNNGG 2 cut(s) 209, 553
AgsI TTSAA 5 cut(s) 74, 452, 533, 541, 621
AjuI GAANNNNNNNTTGG 2 cut(s) 341, 373
AluBI AGCT 2 cut(s) 695, 763
AluI AGCT 2 cut(s) 695, 763
AlwI GGATC 1 cut(s) 640
AlwNI CAGNNNCTG 1 cut(s) 426
AoxI GGCC 2 cut(s) 520, 544
ApeKI GCWGC 1 cut(s) 748
ApoI RAATTY 1 cut(s) 727
AspLEI GCGC 1 cut(s) 202
AspS9I GGNCC 1 cut(s) 544
AsuC2I CCSGG 1 cut(s) 210
AsuHPI GGTGA 2 cut(s) 603, 723
BanI GGYRCC 1 cut(s) 199
BarI GAAGNNNNNNTAC 2 cut(s) 166, 198
BbvI GCAGC 1 cut(s) 735
BccI CCATC 3 cut(s) 577, 661, 742
BceAI ACGGC 1 cut(s) 187
BcgI CGANNNNNNTGC 2 cut(s) 117, 151
BcnI CCSGG 1 cut(s) 210
BfaI CTAG 3 cut(s) 164, 615, 764
BfoI RGCGCY 1 cut(s) 203
BisI GCNGC 1 cut(s) 749
BlsI GCNGC 1 cut(s) 750
Bme1390I CCNGG 1 cut(s) 210
BmgT120I GGNCC 1 cut(s) 544
BmiI GGNNCC 1 cut(s) 201
BmrFI CCNGG 1 cut(s) 210
BmrI ACTGGG 1 cut(s) 414
BmsI GCATC 1 cut(s) 750
BmuI ACTGGG 1 cut(s) 414
Bpu10I CCTNAGC 1 cut(s) 262
BpuMI CCSGG 1 cut(s) 210
Bsa29I ATCGAT 1 cut(s) 777
BsaHI GRCGYC 1 cut(s) 200
BsaJI CCNNGG 1 cut(s) 209
BsaXI ACNNNNNCTCC 2 cut(s) 344, 374
Bsc4I CCNNNNNNNGG 2 cut(s) 209, 553
Bse1I ACTGG 1 cut(s) 420
Bse3DI GCAATG 1 cut(s) 23
BseCI ATCGAT 1 cut(s) 777
BseDI CCNNGG 1 cut(s) 209
BseGI GGATG 1 cut(s) 578
BseLI CCNNNNNNNGG 2 cut(s) 209, 553
BseMI GCAATG 1 cut(s) 23
BseMII CTCAG 1 cut(s) 627
BseNI ACTGG 1 cut(s) 420
BseXI GCAGC 1 cut(s) 735
BshFI GGCC 2 cut(s) 522, 546
BshNI GGYRCC 1 cut(s) 199
BshVI ATCGAT 1 cut(s) 777
BsiSI CCGG 1 cut(s) 209
BslFI GGGAC 1 cut(s) 226
BslI CCNNNNNNNGG 2 cut(s) 209, 553
BsmFI GGGAC 1 cut(s) 226
BsnI GGCC 2 cut(s) 522, 546
Bsp1407I TGTACA 1 cut(s) 20
Bsp143I GATC 3 cut(s) 632, 774, 778
BspACI CCGC 1 cut(s) 671
BspANI GGCC 2 cut(s) 522, 546
BspCNI CTCAG 1 cut(s) 628
BspDI ATCGAT 1 cut(s) 777
BspLI GGNNCC 1 cut(s) 201
BspPI GGATC 1 cut(s) 640
BspT107I GGYRCC 1 cut(s) 199
BsrDI GCAATG 1 cut(s) 23
BsrGI TGTACA 1 cut(s) 20
BsrI ACTGG 1 cut(s) 420
BssECI CCNNGG 1 cut(s) 209
BssMI GATC 3 cut(s) 632, 774, 778
BssNI GRCGYC 1 cut(s) 200
Bst4CI ACNGT 1 cut(s) 537
Bst6I CTCTTC 2 cut(s) 591, 657
BstACI GRCGYC 1 cut(s) 200
BstAUI TGTACA 1 cut(s) 20
BstC8I GCNNGC 1 cut(s) 673
BstDEI CTNAG 5 cut(s) 7, 115, 262, 636, 689
BstF5I GGATG 1 cut(s) 578
BstH2I RGCGCY 1 cut(s) 203
BstHHI GCGC 1 cut(s) 202
BstKTI GATC 3 cut(s) 635, 777, 781
BstMBI GATC 3 cut(s) 632, 774, 778
BstSCI CCNGG 1 cut(s) 208
BstV1I GCAGC 1 cut(s) 735
BstX2I RGATCY 1 cut(s) 632
BstYI RGATCY 1 cut(s) 632
Bsu15I ATCGAT 1 cut(s) 777
BsuRI GGCC 2 cut(s) 522, 546
BsuTUI ATCGAT 1 cut(s) 777
BtsCI GGATG 1 cut(s) 578
Cac8I GCNNGC 1 cut(s) 673
CaiI CAGNNNCTG 1 cut(s) 426
CfoI GCGC 1 cut(s) 202
Cfr13I GGNCC 1 cut(s) 544
ClaI ATCGAT 1 cut(s) 777
Csp6I GTAC 1 cut(s) 21
CviAII CATG 2 cut(s) 66, 738
CviJI RGCY 6 cut(s) 266, 522, 546, 695, 763, 820
CviKI_1 RGCY 6 cut(s) 266, 522, 546, 695, 763, 820
CviQI GTAC 1 cut(s) 21
DdeI CTNAG 5 cut(s) 7, 115, 262, 636, 689
DinI GGCGCC 1 cut(s) 201
DpnI GATC 3 cut(s) 634, 776, 780
DpnII GATC 3 cut(s) 632, 774, 778
Eam1104I CTCTTC 2 cut(s) 591, 657
EarI CTCTTC 2 cut(s) 591, 657
EcoT22I ATGCAT 1 cut(s) 743
EgeI GGCGCC 1 cut(s) 201
EheI GGCGCC 1 cut(s) 201
FaeI CATG 2 cut(s) 69, 741
FalI AAGNNNNNCTT 4 cut(s) 245, 277, 672, 704
FaqI GGGAC 1 cut(s) 226
FatI CATG 2 cut(s) 65, 737
FauI CCCGC 1 cut(s) 664
FauNDI CATATG 1 cut(s) 799
Fnu4HI GCNGC 1 cut(s) 749
FokI GGATG 1 cut(s) 565
Fsp4HI GCNGC 1 cut(s) 749
FspBI CTAG 3 cut(s) 164, 615, 764
GlaI GCGC 1 cut(s) 201
GluI GCNGC 1 cut(s) 749
HaeII RGCGCY 1 cut(s) 203
HaeIII GGCC 2 cut(s) 522, 546
HapII CCGG 1 cut(s) 209
HhaI GCGC 1 cut(s) 202
Hin1I GRCGYC 1 cut(s) 200
Hin1II CATG 2 cut(s) 69, 741
Hin6I GCGC 1 cut(s) 200
HinP1I GCGC 1 cut(s) 200
HinfI GANTC 5 cut(s) 35, 106, 256, 434, 443
HpaII CCGG 1 cut(s) 209
HphI GGTGA 2 cut(s) 603, 723
Hpy166II GTNNAC 2 cut(s) 52, 287
Hpy188I TCNGA 1 cut(s) 637
Hpy8I GTNNAC 2 cut(s) 52, 287
HpyAV CCTTC 2 cut(s) 168, 535
HpyCH4III ACNGT 1 cut(s) 537
HpyCH4V TGCA 2 cut(s) 339, 741
HpyF3I CTNAG 5 cut(s) 7, 115, 262, 636, 689
Hsp92I GRCGYC 1 cut(s) 200
Hsp92II CATG 2 cut(s) 69, 741
HspAI GCGC 1 cut(s) 200
KasI GGCGCC 1 cut(s) 199
Kzo9I GATC 3 cut(s) 632, 774, 778
LpnPI CCDG 2 cut(s) 222, 433
Lsp1109I GCAGC 1 cut(s) 735
LweI GCATC 1 cut(s) 750
MaeI CTAG 3 cut(s) 164, 615, 764
MaeIII GTNAC 1 cut(s) 76
MalI GATC 3 cut(s) 634, 776, 780
MboI GATC 3 cut(s) 632, 774, 778
MboII GAAGA 3 cut(s) 608, 674, 778
MflI RGATCY 1 cut(s) 632
MluCI AATT 8 cut(s) 293, 334, 355, 382, 395, 528, 641, 727
Mly113I GGCGCC 1 cut(s) 200
MlyI GAGTC 2 cut(s) 443, 452
MnlI CCTC 5 cut(s) 586, 592, 652, 694, 818
Mph1103I ATGCAT 1 cut(s) 743
MseI TTAA 2 cut(s) 333, 461
MslI CAYNNNNRTG 1 cut(s) 736
MspI CCGG 1 cut(s) 209
MspR9I CCNGG 1 cut(s) 210
NarI GGCGCC 1 cut(s) 200
NciI CCSGG 1 cut(s) 210
NdeI CATATG 1 cut(s) 799
NdeII GATC 3 cut(s) 632, 774, 778
NlaIII CATG 2 cut(s) 69, 741
NlaIV GGNNCC 1 cut(s) 201
NsiI ATGCAT 1 cut(s) 743
PfeI GAWTC 3 cut(s) 35, 106, 256
PflMI CCANNNNNTGG 1 cut(s) 553
PkrI GCNGC 1 cut(s) 750
PleI GAGTC 2 cut(s) 442, 451
PluTI GGCGCC 1 cut(s) 203
PpsI GAGTC 2 cut(s) 442, 451
PsiI TTATAA 1 cut(s) 320
PspN4I GGNNCC 1 cut(s) 201
PspPI GGNCC 1 cut(s) 544
PstNI CAGNNNCTG 1 cut(s) 426
PsuI RGATCY 1 cut(s) 632
RsaI GTAC 1 cut(s) 22
RsaNI GTAC 1 cut(s) 21
RseI CAYNNNNRTG 1 cut(s) 736
SaqAI TTAA 2 cut(s) 333, 461
SatI GCNGC 1 cut(s) 749
Sau3AI GATC 3 cut(s) 632, 774, 778
Sau96I GGNCC 1 cut(s) 544
SchI GAGTC 2 cut(s) 443, 452
ScrFI CCNGG 1 cut(s) 210
SetI ASST 6 cut(s) 236, 382, 616, 697, 765, 827
SfaNI GCATC 1 cut(s) 750
SfoI GGCGCC 1 cut(s) 201
SmiMI CAYNNNNRTG 1 cut(s) 736
Sse9I AATT 8 cut(s) 293, 334, 355, 382, 395, 528, 641, 727
SsiI CCGC 1 cut(s) 671
SspDI GGCGCC 1 cut(s) 199
SspMI CTAG 3 cut(s) 164, 615, 764
StyD4I CCNGG 1 cut(s) 208
TaaI ACNGT 1 cut(s) 537
TaqI TCGA 2 cut(s) 127, 777
TasI AATT 8 cut(s) 293, 334, 355, 382, 395, 528, 641, 727
TatI WGTACW 1 cut(s) 20
TfiI GAWTC 3 cut(s) 35, 106, 256
Tru1I TTAA 2 cut(s) 333, 461
Tru9I TTAA 2 cut(s) 333, 461
TseI GCWGC 1 cut(s) 748
TspGWI ACGGA 1 cut(s) 578
Van91I CCANNNNNTGG 1 cut(s) 553
XapI RAATTY 1 cut(s) 727
XspI CTAG 3 cut(s) 164, 615, 764
Zsp2I ATGCAT 1 cut(s) 743
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.