transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotrans_gag | PF03732 | 3 - 95 | 3.3e-17 | Retrotransposon gag protein |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 110 |
| AgsI | TTSAA | 6 cut(s) | 126, 164, 208, 263, 293, 382 |
| AjiI | CACGTC | 1 cut(s) | 75 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 45, 77 |
| AluBI | AGCT | 3 cut(s) | 8, 35, 253 |
| AluI | AGCT | 3 cut(s) | 8, 35, 253 |
| ApoI | RAATTY | 1 cut(s) | 110 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 183, 252 |
| AsuHPI | GGTGA | 1 cut(s) | 335 |
| BfaI | CTAG | 3 cut(s) | 78, 215, 305 |
| BmgBI | CACGTC | 1 cut(s) | 75 |
| BmiI | GGNNCC | 1 cut(s) | 67 |
| BmsI | GCATC | 3 cut(s) | 230, 298, 340 |
| Bpu10I | CCTNAGC | 1 cut(s) | 36 |
| BsaJI | CCNNGG | 1 cut(s) | 172 |
| BseDI | CCNNGG | 1 cut(s) | 172 |
| BsmI | GAATGC | 3 cut(s) | 98, 159, 388 |
| BspLI | GGNNCC | 1 cut(s) | 67 |
| BspQI | GCTCTTC | 1 cut(s) | 243 |
| BssECI | CCNNGG | 1 cut(s) | 172 |
| BssT1I | CCWWGG | 1 cut(s) | 172 |
| Bst4CI | ACNGT | 1 cut(s) | 70 |
| Bst6I | CTCTTC | 2 cut(s) | 86, 243 |
| BstDEI | CTNAG | 2 cut(s) | 36, 103 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 374, 383 |
| BtrI | CACGTC | 1 cut(s) | 75 |
| CviAII | CATG | 2 cut(s) | 88, 225 |
| CviJI | RGCY | 4 cut(s) | 8, 35, 253, 377 |
| CviKI_1 | RGCY | 4 cut(s) | 8, 35, 253, 377 |
| DdeI | CTNAG | 2 cut(s) | 36, 103 |
| Eam1104I | CTCTTC | 2 cut(s) | 86, 243 |
| EarI | CTCTTC | 2 cut(s) | 86, 243 |
| Eco130I | CCWWGG | 1 cut(s) | 172 |
| EcoT14I | CCWWGG | 1 cut(s) | 172 |
| EcoT22I | ATGCAT | 1 cut(s) | 388 |
| ErhI | CCWWGG | 1 cut(s) | 172 |
| FaeI | CATG | 2 cut(s) | 91, 228 |
| FaiI | YATR | 7 cut(s) | 51, 89, 193, 198, 226, 319, 388 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 237, 269, 267, 299 |
| FatI | CATG | 2 cut(s) | 87, 224 |
| FspBI | CTAG | 3 cut(s) | 78, 215, 305 |
| Hin1II | CATG | 2 cut(s) | 91, 228 |
| HincII | GTYRAC | 1 cut(s) | 334 |
| HindII | GTYRAC | 1 cut(s) | 334 |
| HindIII | AAGCTT | 1 cut(s) | 6 |
| HinfI | GANTC | 4 cut(s) | 129, 179, 211, 279 |
| HphI | GGTGA | 1 cut(s) | 335 |
| Hpy166II | GTNNAC | 1 cut(s) | 334 |
| Hpy188III | TCNNGA | 2 cut(s) | 126, 208 |
| Hpy8I | GTNNAC | 1 cut(s) | 334 |
| HpyAV | CCTTC | 2 cut(s) | 269, 293 |
| HpyCH4III | ACNGT | 1 cut(s) | 70 |
| HpyCH4IV | ACGT | 1 cut(s) | 74 |
| HpyCH4V | TGCA | 3 cut(s) | 221, 368, 386 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 374, 383 |
| HpyF3I | CTNAG | 2 cut(s) | 36, 103 |
| HpySE526I | ACGT | 1 cut(s) | 74 |
| Hsp92II | CATG | 2 cut(s) | 91, 228 |
| LguI | GCTCTTC | 1 cut(s) | 243 |
| LweI | GCATC | 3 cut(s) | 230, 298, 340 |
| MaeI | CTAG | 3 cut(s) | 78, 215, 305 |
| MaeII | ACGT | 1 cut(s) | 74 |
| MaeIII | GTNAC | 1 cut(s) | 70 |
| MboII | GAAGA | 4 cut(s) | 103, 157, 160, 260 |
| MfeI | CAATTG | 2 cut(s) | 288, 345 |
| MluCI | AATT | 6 cut(s) | 53, 110, 258, 288, 345, 363 |
| MlyI | GAGTC | 3 cut(s) | 138, 205, 273 |
| MmeI | TCCRAC | 1 cut(s) | 212 |
| MnlI | CCTC | 2 cut(s) | 135, 240 |
| Mph1103I | ATGCAT | 1 cut(s) | 388 |
| MroXI | GAANNNNTTC | 2 cut(s) | 183, 252 |
| MseI | TTAA | 1 cut(s) | 362 |
| MunI | CAATTG | 2 cut(s) | 288, 345 |
| Mva1269I | GAATGC | 3 cut(s) | 98, 159, 388 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 374, 383 |
| NlaIII | CATG | 2 cut(s) | 91, 228 |
| NlaIV | GGNNCC | 1 cut(s) | 67 |
| NmuCI | GTSAC | 1 cut(s) | 70 |
| NsiI | ATGCAT | 1 cut(s) | 388 |
| PciSI | GCTCTTC | 1 cut(s) | 243 |
| PctI | GAATGC | 3 cut(s) | 98, 159, 388 |
| PdmI | GAANNNNTTC | 2 cut(s) | 183, 252 |
| PfeI | GAWTC | 1 cut(s) | 179 |
| PleI | GAGTC | 3 cut(s) | 137, 205, 273 |
| PpsI | GAGTC | 3 cut(s) | 137, 205, 273 |
| PspN4I | GGNNCC | 1 cut(s) | 67 |
| SapI | GCTCTTC | 1 cut(s) | 243 |
| SaqAI | TTAA | 1 cut(s) | 362 |
| SchI | GAGTC | 3 cut(s) | 138, 205, 273 |
| SetI | ASST | 4 cut(s) | 10, 37, 77, 255 |
| SfaNI | GCATC | 3 cut(s) | 230, 298, 340 |
| Sse9I | AATT | 6 cut(s) | 53, 110, 258, 288, 345, 363 |
| SspI | AATATT | 1 cut(s) | 266 |
| SspMI | CTAG | 3 cut(s) | 78, 215, 305 |
| StyI | CCWWGG | 1 cut(s) | 172 |
| TaaI | ACNGT | 1 cut(s) | 70 |
| TaiI | ACGT | 1 cut(s) | 77 |
| TaqI | TCGA | 1 cut(s) | 373 |
| TasI | AATT | 6 cut(s) | 53, 110, 258, 288, 345, 363 |
| TfiI | GAWTC | 1 cut(s) | 179 |
| Tru1I | TTAA | 1 cut(s) | 362 |
| Tru9I | TTAA | 1 cut(s) | 362 |
| TseFI | GTSAC | 1 cut(s) | 70 |
| Tsp45I | GTSAC | 1 cut(s) | 70 |
| TspDTI | ATGAA | 4 cut(s) | 17, 66, 104, 257 |
| XapI | RAATTY | 1 cut(s) | 110 |
| XmnI | GAANNNNTTC | 2 cut(s) | 183, 252 |
| XspI | CTAG | 3 cut(s) | 78, 215, 305 |
| Zsp2I | ATGCAT | 1 cut(s) | 388 |