pycom02g18130

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0000437
Physical Location & Seq
Reverse (-)
16432097 .. 16432687
591 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g18130.2

Sequence Viewer

Length: 531 bp
ATGAAGGCCTTTCCATTTTCACTTATGGACAAGGCCAAAGATTGGCTCTACGAACTAGCCCCGGGAACTGTGACTTCGTGGGAGAGTATGAAGCGTGCTTTCTTGGAGAAATTCTTCCCTACTTCGAGAGTGATTCTCCTACGGAAGAAAATTAGTGGTATTCAACAGAATCATGGTGAGACATTCCCGGCTTATTATGAGCGCTTCAAGGGCCTTGTAGCTTCATGTCCTCAACATCAAATGAAGGAGGAACTTCTCCTTCAATATTTCTATGAGGGCCTCCTTCCTATCGAACGTCAAATGCTTGATGCATCAGCGGGAGGAGCATTGGTGGACAAAACACCAAGGGATGCCAAGATTCTCATAGCCAACCGAGCGCTCAACGCTCAACAATATGAAGGAGTGGGCCAAAGGGAAGCCCCACGGCAACAAAGTATAAATGAGGTTGTGATTGGTCCAAAAGCACAAGAACACCAAGTTTGTGGCGTGTGCTCAATTCAGGGCATCCATCCGACAAGTGCCCTCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotrans_gag

Protein Analysis

177

Amino Acids

19.84

Weight (kDa)

8.75

Isoelectric Point (pI)

38.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000437)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G06105
fragaria_vesca FvH4_1g09709 FvH4_4g02101 FvH4_4g08975 FvH4_6g23372 FvH4_6g39851 FvH4_c1g00300
malus_domestica MD01G1176100.v1.1 MD09G1284900.v1.1 MD15G1306600.v1.1
prunus_persica Prupe.1G227700_v2.0.a1
pyrus_communis pycom01g00630 pycom01g01020 pycom01g01690 pycom01g01760 pycom01g04190 pycom01g04400 pycom02g18130 pycom03g10160 pycom05g06370 pycom05g08930 pycom06g05590 pycom10g06320 pycom11g14330 pycom11g15320 pycom11g16240 pycom12416g00050 pycom12420g00010 pycom12420g00120 pycom12426g00180 pycom12426g00710 pycom12531g00010 pycom1256g00020 pycom1256g00050 pycom1341g00030 pycom1353g00030 pycom13g23070 pycom13g23210 pycom13g26260 pycom13g26370 pycom13g26470 pycom13g26980 pycom14g08550 pycom14g08850 pycom1534g00040 pycom15g28760 pycom15g31230 pycom1604g00040 pycom16g21900 pycom16g26030 pycom1739g00020 pycom1739g00050 pycom17g12970 pycom17g17960 pycom17g18300 pycom17g18650 pycom2172g00020 pycom2438g00020 pycom436g00370 pycom436g00390 pycom576g00050 pycom76g00020
rosa_chinensis RchiOBHm_Chr1g0320811 RchiOBHm_Chr2g0135321 RchiOBHm_Chr3g0485721 RchiOBHm_Chr7g0236571
rosa_multiflora Rmu_sc0000185.1_g000007 Rmu_sc0002094.1_g000030 Rmu_sc0002764.1_g000007 Rmu_sc0002809.1_g000014 Rmu_sc0003005.1_g000007 Rmu_sc0003798.1_g000005 Rmu_sc0004646.1_g000027 Rmu_sc0004665.1_g000009 Rmu_sc0004818.1_g000001 Rmu_sc0004988.1_g000031 Rmu_sc0006373.1_g000007 Rmu_sc0007142.1_g000015 Rmu_sc0009930.1_g000001 Rmu_sc0011451.1_g000001 Rmu_sc0020424.1_g000001 Rmu_sc0036944.1_g000001 Rmu_ssc0000062.1_g000010
rosa_roxburghii Rroxscaffold_2G00123930 Rroxscaffold_3G00231480 Rroxscaffold_6G00413880
rosa_rugosa Rorug04G0084800
rosa_samantha Rh3BG150500 Rh6DG232400
rosa_wichuraiana Rw2G018400 Rw3G027860 Rw4G021220 Rw6G020670 Rw6G037970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 42
AciI CCGC 1 cut(s) 317
AcsI RAATTY 1 cut(s) 110
AfeI AGCGCT 2 cut(s) 203, 378
AfiI CCNNNNNNNGG 1 cut(s) 42
AgsI TTSAA 3 cut(s) 164, 208, 263
AluBI AGCT 1 cut(s) 221
AluI AGCT 1 cut(s) 221
Alw21I GWGCWC 1 cut(s) 494
Alw26I GTCTC 1 cut(s) 173
Ama87I CYCGRG 1 cut(s) 61
Aor51HI AGCGCT 2 cut(s) 203, 378
AoxI GGCC 5 cut(s) 6, 33, 211, 277, 406
ApoI RAATTY 1 cut(s) 110
Asp700I GAANNNNTTC 1 cut(s) 113
AspLEI GCGC 2 cut(s) 204, 379
AspS9I GGNCC 4 cut(s) 211, 277, 406, 455
AsuC2I CCSGG 3 cut(s) 62, 63, 188
AsuHPI GGTGA 1 cut(s) 188
AvaI CYCGRG 1 cut(s) 61
AvaII GGWCC 1 cut(s) 455
BaeGI GKGCMC 1 cut(s) 523
Bbv12I GWGCWC 1 cut(s) 494
BccI CCATC 1 cut(s) 516
BceAI ACGGC 1 cut(s) 440
BcnI CCSGG 3 cut(s) 62, 63, 188
BcoDI GTCTC 1 cut(s) 173
BfaI CTAG 1 cut(s) 56
BfoI RGCGCY 2 cut(s) 205, 380
Bme1390I CCNGG 3 cut(s) 62, 63, 188
Bme18I GGWCC 1 cut(s) 455
BmeT110I CYCGRG 1 cut(s) 61
BmgT120I GGNCC 4 cut(s) 211, 277, 406, 455
BmrFI CCNGG 3 cut(s) 62, 63, 188
BmsI GCATC 4 cut(s) 298, 320, 340, 513
BplI GAGNNNNNCTC 2 cut(s) 120, 152
BpuMI CCSGG 3 cut(s) 62, 63, 188
BsaJI CCNNGG 4 cut(s) 60, 61, 344, 422
BsaXI ACNNNNNCTCC 2 cut(s) 315, 345
Bsc4I CCNNNNNNNGG 1 cut(s) 42
BseDI CCNNGG 4 cut(s) 60, 61, 344, 422
BseGI GGATG 3 cut(s) 355, 504, 508
BseLI CCNNNNNNNGG 1 cut(s) 42
BseRI GAGGAG 1 cut(s) 336
BseSI GKGCMC 1 cut(s) 523
BshFI GGCC 5 cut(s) 8, 35, 213, 279, 408
BsiHKAI GWGCWC 1 cut(s) 494
BsiHKCI CYCGRG 1 cut(s) 61
BsiSI CCGG 2 cut(s) 62, 188
BslI CCNNNNNNNGG 1 cut(s) 42
BsmAI GTCTC 1 cut(s) 173
BsnI GGCC 5 cut(s) 8, 35, 213, 279, 408
BsoBI CYCGRG 1 cut(s) 61
Bsp1286I GDGCHC 2 cut(s) 494, 523
BspACI CCGC 1 cut(s) 317
BspANI GGCC 5 cut(s) 8, 35, 213, 279, 408
BssECI CCNNGG 4 cut(s) 60, 61, 344, 422
BssT1I CCWWGG 1 cut(s) 344
Bst4CI ACNGT 1 cut(s) 70
BstC8I GCNNGC 1 cut(s) 96
BstDSI CCRYGG 1 cut(s) 422
BstF5I GGATG 3 cut(s) 355, 504, 508
BstH2I RGCGCY 2 cut(s) 205, 380
BstHHI GCGC 2 cut(s) 204, 379
BstMAI GTCTC 1 cut(s) 173
BstMWI GCNNNNNNNGC 4 cut(s) 210, 323, 374, 383
BstSCI CCNGG 3 cut(s) 60, 61, 186
BstSLI GKGCMC 1 cut(s) 523
BstXI CCANNNNNNTGG 1 cut(s) 482
BsuRI GGCC 5 cut(s) 8, 35, 213, 279, 408
BtgI CCRYGG 1 cut(s) 422
BtsCI GGATG 3 cut(s) 355, 504, 508
Cac8I GCNNGC 1 cut(s) 96
CfoI GCGC 2 cut(s) 204, 379
Cfr13I GGNCC 4 cut(s) 211, 277, 406, 455
Cfr9I CCCGGG 1 cut(s) 61
CviAII CATG 2 cut(s) 173, 225
Eco130I CCWWGG 1 cut(s) 344
Eco147I AGGCCT 1 cut(s) 8
Eco47I GGWCC 1 cut(s) 455
Eco47III AGCGCT 2 cut(s) 203, 378
Eco88I CYCGRG 1 cut(s) 61
EcoO109I RGGNCCY 2 cut(s) 211, 277
EcoT14I CCWWGG 1 cut(s) 344
EcoT22I ATGCAT 1 cut(s) 313
ErhI CCWWGG 1 cut(s) 344
FaeI CATG 2 cut(s) 176, 228
FaiI YATR 9 cut(s) 26, 89, 174, 198, 226, 273, 365, 396, 437
FatI CATG 2 cut(s) 172, 224
FauI CCCGC 1 cut(s) 310
FokI GGATG 3 cut(s) 362, 491, 495
FspBI CTAG 1 cut(s) 56
GlaI GCGC 2 cut(s) 203, 378
HaeII RGCGCY 2 cut(s) 205, 380
HaeIII GGCC 5 cut(s) 8, 35, 213, 279, 408
HapII CCGG 2 cut(s) 62, 188
HhaI GCGC 2 cut(s) 204, 379
Hin1II CATG 2 cut(s) 176, 228
Hin6I GCGC 2 cut(s) 202, 377
HinP1I GCGC 2 cut(s) 202, 377
HinfI GANTC 3 cut(s) 133, 169, 358
HpaII CCGG 2 cut(s) 62, 188
HphI GGTGA 1 cut(s) 188
Hpy166II GTNNAC 1 cut(s) 334
Hpy188I TCNGA 1 cut(s) 513
Hpy188III TCNNGA 1 cut(s) 126
Hpy8I GTNNAC 1 cut(s) 334
HpyAV CCTTC 4 cut(s) 238, 269, 293, 392
HpyCH4III ACNGT 1 cut(s) 70
HpyCH4IV ACGT 1 cut(s) 295
HpyCH4V TGCA 1 cut(s) 311
HpyF10VI GCNNNNNNNGC 4 cut(s) 210, 323, 374, 383
HpySE526I ACGT 1 cut(s) 295
Hsp92II CATG 2 cut(s) 176, 228
HspAI GCGC 2 cut(s) 202, 377
LmnI GCTCC 1 cut(s) 323
LpnPI CCDG 3 cut(s) 75, 201, 485
LweI GCATC 4 cut(s) 298, 320, 340, 513
MaeI CTAG 1 cut(s) 56
MaeII ACGT 1 cut(s) 295
MaeIII GTNAC 1 cut(s) 70
MboII GAAGA 2 cut(s) 106, 157
MhlI GDGCHC 2 cut(s) 494, 523
MluCI AATT 3 cut(s) 110, 150, 495
MnlI CCTC 6 cut(s) 240, 241, 268, 290, 314, 436
Mph1103I ATGCAT 1 cut(s) 313
MroXI GAANNNNTTC 1 cut(s) 113
MspA1I CMGCKG 1 cut(s) 317
MspI CCGG 2 cut(s) 62, 188
MspR9I CCNGG 3 cut(s) 62, 63, 188
MwoI GCNNNNNNNGC 4 cut(s) 210, 323, 374, 383
NciI CCSGG 3 cut(s) 62, 63, 188
NlaIII CATG 2 cut(s) 176, 228
NmuCI GTSAC 1 cut(s) 70
NsiI ATGCAT 1 cut(s) 313
PceI AGGCCT 1 cut(s) 8
PdmI GAANNNNTTC 1 cut(s) 113
PfeI GAWTC 3 cut(s) 133, 169, 358
PflMI CCANNNNNTGG 1 cut(s) 42
PspPI GGNCC 4 cut(s) 211, 277, 406, 455
Sau96I GGNCC 4 cut(s) 211, 277, 406, 455
ScrFI CCNGG 3 cut(s) 62, 63, 188
SduI GDGCHC 2 cut(s) 494, 523
SetI ASST 3 cut(s) 223, 298, 447
SfaNI GCATC 4 cut(s) 298, 320, 340, 513
SinI GGWCC 1 cut(s) 455
SmaI CCCGGG 1 cut(s) 63
Sse9I AATT 3 cut(s) 110, 150, 495
SseBI AGGCCT 1 cut(s) 8
SsiI CCGC 1 cut(s) 317
SspI AATATT 1 cut(s) 266
SspMI CTAG 1 cut(s) 56
StuI AGGCCT 1 cut(s) 8
StyD4I CCNGG 3 cut(s) 60, 61, 186
StyI CCWWGG 1 cut(s) 344
TaaI ACNGT 1 cut(s) 70
TaiI ACGT 1 cut(s) 298
TaqI TCGA 2 cut(s) 125, 291
TasI AATT 3 cut(s) 110, 150, 495
TfiI GAWTC 3 cut(s) 133, 169, 358
TseFI GTSAC 1 cut(s) 70
Tsp45I GTSAC 1 cut(s) 70
TspDTI ATGAA 5 cut(s) 17, 104, 213, 257, 411
TspGWI ACGGA 1 cut(s) 157
TspMI CCCGGG 1 cut(s) 61
Van91I CCANNNNNTGG 1 cut(s) 42
VpaK11BI GGWCC 1 cut(s) 455
XapI RAATTY 1 cut(s) 110
XmaI CCCGGG 1 cut(s) 61
XmnI GAANNNNTTC 1 cut(s) 113
XspI CTAG 1 cut(s) 56
Zsp2I ATGCAT 1 cut(s) 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.