Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0000437

Physical Location & Seq

Genomic Coordinates Reverse (-)

14261819 .. 14262346

Gene Structure 528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g14330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGAGTTTGGTGCCGATATTATTAAATTCAAGGTTCCTGAATCTGTTAAGAATACGAATGATGTTCGTTCTTGTTTTGCCATATATGTGATTAAAGATTTAGGGCAGGAACGTTCAGCATCACCAATCAAGAAGGATTATATTGGTGAGCCACCTATTCCAATTCCAATTCTAATTCCCATTTCAATTAATAGGTTGTTACCTTCTTTGATTCGGGTGCCCAATCGAATCCAAGTCGGTGGCAGAGTTTACATTGACTTTAGGAAGCTCAATGCCACAATTAGGAAGGATCACTATCCCTTTGCGTTCATAGAGCCTTACTATGAGTATTTTGAGGAGCATGTCGTGGAGGATTTACCCCTCTATGTCGTTGGCCCTAATGGAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000451 GO:0000453 GO:0001510 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006355 GO:0006357 GO:0006364 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008173 GO:0008175 GO:0008649 GO:0008757 GO:0009451 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016072 GO:0016423 GO:0016435 GO:0016740 GO:0016741 GO:0019219 GO:0019222 GO:0022613 GO:0030488 GO:0031167 GO:0031323 GO:0031326 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070039 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0140098 GO:0140101 GO:0140102 GO:1901360 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SpoU_methylase

Protein Analysis

130

Amino Acids

14.78

Weight (kDa)

6.73

Isoelectric Point (pI)

40.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000437)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06105
fragaria_vesca	FvH4_1g09709 FvH4_4g02101 FvH4_4g08975 FvH4_6g23372 FvH4_6g39851 FvH4_c1g00300
malus_domestica	MD01G1176100.v1.1 MD09G1284900.v1.1 MD15G1306600.v1.1
prunus_persica	Prupe.1G227700_v2.0.a1
pyrus_communis	pycom01g00630 pycom01g01020 pycom01g01690 pycom01g01760 pycom01g04190 pycom01g04400 pycom02g18130 pycom03g10160 pycom05g06370 pycom05g08930 pycom06g05590 pycom10g06320 pycom11g14330 pycom11g15320 pycom11g16240 pycom12416g00050 pycom12420g00010 pycom12420g00120 pycom12426g00180 pycom12426g00710 pycom12531g00010 pycom1256g00020 pycom1256g00050 pycom1341g00030 pycom1353g00030 pycom13g23070 pycom13g23210 pycom13g26260 pycom13g26370 pycom13g26470 pycom13g26980 pycom14g08550 pycom14g08850 pycom1534g00040 pycom15g28760 pycom15g31230 pycom1604g00040 pycom16g21900 pycom16g26030 pycom1739g00020 pycom1739g00050 pycom17g12970 pycom17g17960 pycom17g18300 pycom17g18650 pycom2172g00020 pycom2438g00020 pycom436g00370 pycom436g00390 pycom576g00050 pycom76g00020
rosa_chinensis	RchiOBHm_Chr1g0320811 RchiOBHm_Chr2g0135321 RchiOBHm_Chr3g0485721 RchiOBHm_Chr7g0236571
rosa_multiflora	Rmu_sc0000185.1_g000007 Rmu_sc0002094.1_g000030 Rmu_sc0002764.1_g000007 Rmu_sc0002809.1_g000014 Rmu_sc0003005.1_g000007 Rmu_sc0003798.1_g000005 Rmu_sc0004646.1_g000027 Rmu_sc0004665.1_g000009 Rmu_sc0004818.1_g000001 Rmu_sc0004988.1_g000031 Rmu_sc0006373.1_g000007 Rmu_sc0007142.1_g000015 Rmu_sc0009930.1_g000001 Rmu_sc0011451.1_g000001 Rmu_sc0020424.1_g000001 Rmu_sc0036944.1_g000001 Rmu_ssc0000062.1_g000010
rosa_roxburghii	Rroxscaffold_2G00123930 Rroxscaffold_3G00231480 Rroxscaffold_6G00413880
rosa_rugosa	Rorug04G0084800
rosa_samantha	Rh3BG150500 Rh6DG232400
rosa_wichuraiana	Rw2G018400 Rw3G027860 Rw4G021220 Rw6G020670 Rw6G037970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	11, 217
AclI	AACGTT	1 cut(s)	112
AclWI	GGATC	1 cut(s)	297
AcsI	RAATTY	1 cut(s)	26
AfiI	CCNNNNNNNGG	1 cut(s)	282
AgsI	TTSAA	2 cut(s)	31, 186
AluBI	AGCT	2 cut(s)	268, 386
AluI	AGCT	2 cut(s)	268, 386
AlwI	GGATC	1 cut(s)	297
AoxI	GGCC	1 cut(s)	373
ApoI	RAATTY	1 cut(s)	26
AseI	ATTAAT	1 cut(s)	189
AspS9I	GGNCC	1 cut(s)	374
AsuHPI	GGTGA	2 cut(s)	114, 158
BaeGI	GKGCMC	1 cut(s)	222
BanI	GGYRCC	2 cut(s)	11, 217
BmgT120I	GGNCC	1 cut(s)	374
BmiI	GGNNCC	3 cut(s)	13, 36, 219
BmsI	GCATC	1 cut(s)	128
BsaBI	GATNNNNATC	1 cut(s)	294
Bsc4I	CCNNNNNNNGG	1 cut(s)	282
Bse8I	GATNNNNATC	1 cut(s)	294
BseJI	GATNNNNATC	1 cut(s)	294
BseLI	CCNNNNNNNGG	1 cut(s)	282
BseRI	GAGGAG	1 cut(s)	350
BseSI	GKGCMC	1 cut(s)	222
BshFI	GGCC	1 cut(s)	375
BshNI	GGYRCC	2 cut(s)	11, 217
BslI	CCNNNNNNNGG	1 cut(s)	282
BsnI	GGCC	1 cut(s)	375
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp143I	GATC	1 cut(s)	289
BspANI	GGCC	1 cut(s)	375
BspLI	GGNNCC	3 cut(s)	13, 36, 219
BspPI	GGATC	1 cut(s)	297
BspT107I	GGYRCC	2 cut(s)	11, 217
BssMI	GATC	1 cut(s)	289
BstKTI	GATC	1 cut(s)	292
BstMBI	GATC	1 cut(s)	289
BstNSI	RCATGY	1 cut(s)	344
BstSLI	GKGCMC	1 cut(s)	222
BstXI	CCANNNNNNTGG	1 cut(s)	239
BsuRI	GGCC	1 cut(s)	375
Cfr13I	GGNCC	1 cut(s)	374
CviAII	CATG	1 cut(s)	341
CviJI	RGCY	5 cut(s)	151, 268, 316, 375, 386
CviKI_1	RGCY	5 cut(s)	151, 268, 316, 375, 386
DpnI	GATC	1 cut(s)	291
DpnII	GATC	1 cut(s)	289
FaeI	CATG	1 cut(s)	344
FaiI	YATR	8 cut(s)	83, 85, 87, 141, 311, 324, 342, 366
FatI	CATG	1 cut(s)	340
HaeIII	GGCC	1 cut(s)	375
Hin1II	CATG	1 cut(s)	344
HinfI	GANTC	3 cut(s)	41, 211, 228
HphI	GGTGA	2 cut(s)	114, 158
Hpy166II	GTNNAC	1 cut(s)	250
Hpy188III	TCNNGA	2 cut(s)	38, 130
Hpy8I	GTNNAC	1 cut(s)	250
HpyAV	CCTTC	3 cut(s)	127, 213, 280
HpyCH4IV	ACGT	1 cut(s)	112
HpySE526I	ACGT	1 cut(s)	112
Hsp92II	CATG	1 cut(s)	344
Kzo9I	GATC	1 cut(s)	289
LmnI	GCTCC	2 cut(s)	337, 383
LpnPI	CCDG	2 cut(s)	51, 92
LweI	GCATC	1 cut(s)	128
MaeII	ACGT	1 cut(s)	112
MaeIII	GTNAC	1 cut(s)	198
MalI	GATC	1 cut(s)	291
MboI	GATC	1 cut(s)	289
MhlI	GDGCHC	1 cut(s)	222
MluCI	AATT	6 cut(s)	26, 162, 168, 174, 186, 279
MnlI	CCTC	3 cut(s)	328, 343, 371
MseI	TTAA	5 cut(s)	24, 48, 93, 189, 388
MslI	CAYNNNNRTG	1 cut(s)	86
NdeII	GATC	1 cut(s)	289
NlaIII	CATG	1 cut(s)	344
NlaIV	GGNNCC	3 cut(s)	13, 36, 219
NspI	RCATGY	1 cut(s)	344
PfeI	GAWTC	3 cut(s)	41, 211, 228
PshBI	ATTAAT	1 cut(s)	189
Psp1406I	AACGTT	1 cut(s)	112
PspN4I	GGNNCC	3 cut(s)	13, 36, 219
PspPI	GGNCC	1 cut(s)	374
RseI	CAYNNNNRTG	1 cut(s)	86
SaqAI	TTAA	5 cut(s)	24, 48, 93, 189, 388
Sau3AI	GATC	1 cut(s)	289
Sau96I	GGNCC	1 cut(s)	374
SduI	GDGCHC	1 cut(s)	222
SetI	ASST	7 cut(s)	36, 115, 157, 197, 205, 270, 388
SfaNI	GCATC	1 cut(s)	128
SgeI	CNNG	9 cut(s)	43, 50, 84, 119, 142, 227, 245, 353, 358
SmiMI	CAYNNNNRTG	1 cut(s)	86
Sse9I	AATT	6 cut(s)	26, 162, 168, 174, 186, 279
TaiI	ACGT	1 cut(s)	115
TaqI	TCGA	1 cut(s)	226
TasI	AATT	6 cut(s)	26, 162, 168, 174, 186, 279
TfiI	GAWTC	3 cut(s)	41, 211, 228
Tru1I	TTAA	5 cut(s)	24, 48, 93, 189, 388
Tru9I	TTAA	5 cut(s)	24, 48, 93, 189, 388
TspDTI	ATGAA	1 cut(s)	298
VspI	ATTAAT	1 cut(s)	189
XapI	RAATTY	1 cut(s)	26
XceI	RCATGY	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.