Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0000437

Physical Location & Seq

Genomic Coordinates Forward (+)

36274328 .. 36278105

Gene Structure 3778 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1284900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGATGTATCTAGAACCACCAATGAAGAGAGAATTGGAGTGGAGCACAAGGAATACGCCCCAACCATCAAATCTGGTCGAGAGCATCCCTTGTGCATCTGTTGACTATGCTGCCACTTCATCGCAGCACATTGGTGAGCAACCTATTCCAATTCCAATTCCCATTTCAAATAATATGTTGTTACCTCCTTTGGTGCAGGTACCTAATCGAATTCCAGGTGGTGGGAGAGTTCACGTTGACTTATGGAAGCAAAACACCACAATCAGGAAGGATCACTATCCTTTTCCATTCAAAAATCCAAAAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000451 GO:0000453 GO:0001510 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006355 GO:0006357 GO:0006364 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008173 GO:0008175 GO:0008649 GO:0008757 GO:0009451 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016072 GO:0016423 GO:0016435 GO:0016740 GO:0016741 GO:0019219 GO:0019222 GO:0022613 GO:0030488 GO:0031167 GO:0031323 GO:0031326 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070039 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0140098 GO:0140101 GO:0140102 GO:1901360 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SpoU_methylase

Protein Analysis

103

Amino Acids

11.57

Weight (kDa)

8.89

Isoelectric Point (pI)

52.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000437)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06105
fragaria_vesca	FvH4_1g09709 FvH4_4g02101 FvH4_4g08975 FvH4_6g23372 FvH4_6g39851 FvH4_c1g00300
malus_domestica	MD01G1176100.v1.1 MD09G1284900.v1.1 MD15G1306600.v1.1
prunus_persica	Prupe.1G227700_v2.0.a1
pyrus_communis	pycom01g00630 pycom01g01020 pycom01g01690 pycom01g01760 pycom01g04190 pycom01g04400 pycom02g18130 pycom03g10160 pycom05g06370 pycom05g08930 pycom06g05590 pycom10g06320 pycom11g14330 pycom11g15320 pycom11g16240 pycom12416g00050 pycom12420g00010 pycom12420g00120 pycom12426g00180 pycom12426g00710 pycom12531g00010 pycom1256g00020 pycom1256g00050 pycom1341g00030 pycom1353g00030 pycom13g23070 pycom13g23210 pycom13g26260 pycom13g26370 pycom13g26470 pycom13g26980 pycom14g08550 pycom14g08850 pycom1534g00040 pycom15g28760 pycom15g31230 pycom1604g00040 pycom16g21900 pycom16g26030 pycom1739g00020 pycom1739g00050 pycom17g12970 pycom17g17960 pycom17g18300 pycom17g18650 pycom2172g00020 pycom2438g00020 pycom436g00370 pycom436g00390 pycom576g00050 pycom76g00020
rosa_chinensis	RchiOBHm_Chr1g0320811 RchiOBHm_Chr2g0135321 RchiOBHm_Chr3g0485721 RchiOBHm_Chr7g0236571
rosa_multiflora	Rmu_sc0000185.1_g000007 Rmu_sc0002094.1_g000030 Rmu_sc0002764.1_g000007 Rmu_sc0002809.1_g000014 Rmu_sc0003005.1_g000007 Rmu_sc0003798.1_g000005 Rmu_sc0004646.1_g000027 Rmu_sc0004665.1_g000009 Rmu_sc0004818.1_g000001 Rmu_sc0004988.1_g000031 Rmu_sc0006373.1_g000007 Rmu_sc0007142.1_g000015 Rmu_sc0009930.1_g000001 Rmu_sc0011451.1_g000001 Rmu_sc0020424.1_g000001 Rmu_sc0036944.1_g000001 Rmu_ssc0000062.1_g000010
rosa_roxburghii	Rroxscaffold_2G00123930 Rroxscaffold_3G00231480 Rroxscaffold_6G00413880
rosa_rugosa	Rorug04G0084800
rosa_samantha	Rh3BG150500 Rh6DG232400
rosa_wichuraiana	Rw2G018400 Rw3G027860 Rw4G021220 Rw6G020670 Rw6G037970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	187
Acc65I	GGTACC	1 cut(s)	199
AccB1I	GGYRCC	1 cut(s)	199
AccB7I	CCANNNNNTGG	1 cut(s)	221
AclWI	GGATC	1 cut(s)	279
AcsI	RAATTY	1 cut(s)	210
AfaI	GTAC	1 cut(s)	201
AfiI	CCNNNNNNNGG	2 cut(s)	221, 264
AgsI	TTSAA	2 cut(s)	168, 292
AjnI	CCWGG	1 cut(s)	214
AjuI	GAANNNNNNNTTGG	4 cut(s)	17, 49, 148, 180
AleI	CACNNNNGTG	1 cut(s)	132
Alw21I	GWGCWC	1 cut(s)	47
AlwI	GGATC	1 cut(s)	279
ApeKI	GCWGC	2 cut(s)	110, 124
ApoI	RAATTY	1 cut(s)	210
Asp718I	GGTACC	1 cut(s)	199
AsuHPI	GGTGA	1 cut(s)	146
BanI	GGYRCC	1 cut(s)	199
Bbv12I	GWGCWC	1 cut(s)	47
BbvI	GCAGC	2 cut(s)	97, 136
BccI	CCATC	1 cut(s)	73
BciT130I	CCWGG	1 cut(s)	216
BfaI	CTAG	1 cut(s)	11
BfuAI	ACCTGC	1 cut(s)	187
BisI	GCNGC	2 cut(s)	111, 125
BlsI	GCNGC	2 cut(s)	112, 126
Bme1390I	CCNGG	1 cut(s)	216
BmiI	GGNNCC	1 cut(s)	201
BmrFI	CCNGG	1 cut(s)	216
BmsI	GCATC	2 cut(s)	93, 104
BsaBI	GATNNNNATC	1 cut(s)	276
Bsc4I	CCNNNNNNNGG	2 cut(s)	221, 264
Bse8I	GATNNNNATC	1 cut(s)	276
BseBI	CCWGG	1 cut(s)	216
BseGI	GGATG	1 cut(s)	84
BseJI	GATNNNNATC	1 cut(s)	276
BseLI	CCNNNNNNNGG	2 cut(s)	221, 264
BseXI	GCAGC	2 cut(s)	97, 136
BsgI	GTGCAG	1 cut(s)	215
BshNI	GGYRCC	1 cut(s)	199
BsiHKAI	GWGCWC	1 cut(s)	47
BslI	CCNNNNNNNGG	2 cut(s)	221, 264
Bsp1286I	GDGCHC	1 cut(s)	47
Bsp143I	GATC	1 cut(s)	271
BspLI	GGNNCC	1 cut(s)	201
BspMI	ACCTGC	1 cut(s)	187
BspPI	GGATC	1 cut(s)	279
BspT107I	GGYRCC	1 cut(s)	199
BssMI	GATC	1 cut(s)	271
Bst2UI	CCWGG	1 cut(s)	216
Bst6I	CTCTTC	1 cut(s)	20
BstF5I	GGATG	1 cut(s)	84
BstKTI	GATC	1 cut(s)	274
BstMBI	GATC	1 cut(s)	271
BstNI	CCWGG	1 cut(s)	216
BstSCI	CCNGG	1 cut(s)	214
BstV1I	GCAGC	2 cut(s)	97, 136
BtgZI	GCGATG	1 cut(s)	105
BtsCI	GGATG	1 cut(s)	84
BveI	ACCTGC	1 cut(s)	187
Csp6I	GTAC	1 cut(s)	200
CviQI	GTAC	1 cut(s)	200
DpnI	GATC	1 cut(s)	273
DpnII	GATC	1 cut(s)	271
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
EcoRI	GAATTC	1 cut(s)	210
EcoRII	CCWGG	1 cut(s)	214
FaiI	YATR	4 cut(s)	108, 176, 244, 307
Fnu4HI	GCNGC	2 cut(s)	111, 125
FokI	GGATG	1 cut(s)	71
Fsp4HI	GCNGC	2 cut(s)	111, 125
FspBI	CTAG	1 cut(s)	11
GluI	GCNGC	2 cut(s)	111, 125
HincII	GTYRAC	2 cut(s)	103, 238
HindII	GTYRAC	2 cut(s)	103, 238
HphI	GGTGA	1 cut(s)	146
Hpy166II	GTNNAC	3 cut(s)	103, 232, 238
Hpy188III	TCNNGA	3 cut(s)	11, 79, 265
Hpy8I	GTNNAC	3 cut(s)	103, 232, 238
HpyAV	CCTTC	1 cut(s)	262
HpyCH4IV	ACGT	1 cut(s)	234
HpyCH4V	TGCA	2 cut(s)	95, 196
HpySE526I	ACGT	1 cut(s)	234
KpnI	GGTACC	1 cut(s)	203
Kzo9I	GATC	1 cut(s)	271
LmnI	GCTCC	1 cut(s)	42
LpnPI	CCDG	5 cut(s)	59, 182, 201, 228, 250
Lsp1109I	GCAGC	2 cut(s)	97, 136
LweI	GCATC	2 cut(s)	93, 104
MaeI	CTAG	1 cut(s)	11
MaeII	ACGT	1 cut(s)	234
MaeIII	GTNAC	1 cut(s)	180
MalI	GATC	1 cut(s)	273
MboI	GATC	1 cut(s)	271
MboII	GAAGA	1 cut(s)	37
MhlI	GDGCHC	1 cut(s)	47
MluCI	AATT	4 cut(s)	32, 150, 156, 210
MnlI	CCTC	1 cut(s)	195
MslI	CAYNNNNRTG	1 cut(s)	132
MspR9I	CCNGG	1 cut(s)	216
MvaI	CCWGG	1 cut(s)	216
NdeII	GATC	1 cut(s)	271
NlaIV	GGNNCC	1 cut(s)	201
OliI	CACNNNNGTG	1 cut(s)	132
PflMI	CCANNNNNTGG	1 cut(s)	221
PkrI	GCNGC	2 cut(s)	112, 126
Psp6I	CCWGG	1 cut(s)	214
PspGI	CCWGG	1 cut(s)	214
PspN4I	GGNNCC	1 cut(s)	201
RsaI	GTAC	1 cut(s)	201
RsaNI	GTAC	1 cut(s)	200
RseI	CAYNNNNRTG	1 cut(s)	132
SatI	GCNGC	2 cut(s)	111, 125
Sau3AI	GATC	1 cut(s)	271
ScrFI	CCNGG	1 cut(s)	216
SduI	GDGCHC	1 cut(s)	47
SetI	ASST	6 cut(s)	145, 187, 201, 205, 220, 237
SfaNI	GCATC	2 cut(s)	93, 104
SmiMI	CAYNNNNRTG	1 cut(s)	132
Sse9I	AATT	4 cut(s)	32, 150, 156, 210
SspMI	CTAG	1 cut(s)	11
StyD4I	CCNGG	1 cut(s)	214
TaiI	ACGT	1 cut(s)	237
TaqI	TCGA	2 cut(s)	78, 208
TasI	AATT	4 cut(s)	32, 150, 156, 210
TseI	GCWGC	2 cut(s)	110, 124
TspDTI	ATGAA	2 cut(s)	38, 108
Van91I	CCANNNNNTGG	1 cut(s)	221
XapI	RAATTY	1 cut(s)	210
XbaI	TCTAGA	1 cut(s)	10
XspI	CTAG	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.