Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0000437

Physical Location & Seq

Genomic Coordinates Reverse (-)

9232651 .. 9233054

Gene Structure 404 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g10160.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGCAGTGGACAATCGAACCATCAAAGAGCTTTCTGCCTCGGGTTTGGCCAATGCAGCCCCTCTTTGCATCCAATACCCTAGGGCAGCCCCTGAAAAGACCGATGAATTTGAGTTGAAGTCCAGCTTGCTACATCATATACCCAAGTTCCATGGGTTATCAATGGAGGACCCCAATAAGCATTTAAAGGAGTTCGAAGTCGTATGCTCAAGTATGACACCGGTGAACGTGGACAGCAACATATTGAAGATGAAGGAAGTGAGCCTTGTTAGAGAAGTTCTTTCCGACATCACGAGTCATTCTTCTTCGCAAGAAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000350 GO:0000375 GO:0000377 GO:0000393 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0022607 GO:0022613 GO:0022618 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0065003 GO:0071020 GO:0071021 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Slu7

Protein Analysis

107

Amino Acids

11.76

Weight (kDa)

5.47

Isoelectric Point (pI)

42.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000437)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06105
fragaria_vesca	FvH4_1g09709 FvH4_4g02101 FvH4_4g08975 FvH4_6g23372 FvH4_6g39851 FvH4_c1g00300
malus_domestica	MD01G1176100.v1.1 MD09G1284900.v1.1 MD15G1306600.v1.1
prunus_persica	Prupe.1G227700_v2.0.a1
pyrus_communis	pycom01g00630 pycom01g01020 pycom01g01690 pycom01g01760 pycom01g04190 pycom01g04400 pycom02g18130 pycom03g10160 pycom05g06370 pycom05g08930 pycom06g05590 pycom10g06320 pycom11g14330 pycom11g15320 pycom11g16240 pycom12416g00050 pycom12420g00010 pycom12420g00120 pycom12426g00180 pycom12426g00710 pycom12531g00010 pycom1256g00020 pycom1256g00050 pycom1341g00030 pycom1353g00030 pycom13g23070 pycom13g23210 pycom13g26260 pycom13g26370 pycom13g26470 pycom13g26980 pycom14g08550 pycom14g08850 pycom1534g00040 pycom15g28760 pycom15g31230 pycom1604g00040 pycom16g21900 pycom16g26030 pycom1739g00020 pycom1739g00050 pycom17g12970 pycom17g17960 pycom17g18300 pycom17g18650 pycom2172g00020 pycom2438g00020 pycom436g00370 pycom436g00390 pycom576g00050 pycom76g00020
rosa_chinensis	RchiOBHm_Chr1g0320811 RchiOBHm_Chr2g0135321 RchiOBHm_Chr3g0485721 RchiOBHm_Chr7g0236571
rosa_multiflora	Rmu_sc0000185.1_g000007 Rmu_sc0002094.1_g000030 Rmu_sc0002764.1_g000007 Rmu_sc0002809.1_g000014 Rmu_sc0003005.1_g000007 Rmu_sc0003798.1_g000005 Rmu_sc0004646.1_g000027 Rmu_sc0004665.1_g000009 Rmu_sc0004818.1_g000001 Rmu_sc0004988.1_g000031 Rmu_sc0006373.1_g000007 Rmu_sc0007142.1_g000015 Rmu_sc0009930.1_g000001 Rmu_sc0011451.1_g000001 Rmu_sc0020424.1_g000001 Rmu_sc0036944.1_g000001 Rmu_ssc0000062.1_g000010
rosa_roxburghii	Rroxscaffold_2G00123930 Rroxscaffold_3G00231480 Rroxscaffold_6G00413880
rosa_rugosa	Rorug04G0084800
rosa_samantha	Rh3BG150500 Rh6DG232400
rosa_wichuraiana	Rw2G018400 Rw3G027860 Rw4G021220 Rw6G020670 Rw6G037970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	48
AcsI	RAATTY	1 cut(s)	107
AgeI	ACCGGT	1 cut(s)	220
AgsI	TTSAA	2 cut(s)	118, 247
AluBI	AGCT	2 cut(s)	31, 126
AluI	AGCT	2 cut(s)	31, 126
AlwNI	CAGNNNCTG	1 cut(s)	92
Ama87I	CYCGRG	1 cut(s)	40
AoxI	GGCC	1 cut(s)	48
ApeKI	GCWGC	2 cut(s)	56, 86
ApoI	RAATTY	1 cut(s)	107
AsiGI	ACCGGT	1 cut(s)	220
AspA2I	CCTAGG	1 cut(s)	80
AspS9I	GGNCC	1 cut(s)	169
AsuHPI	GGTGA	1 cut(s)	235
AsuII	TTCGAA	1 cut(s)	195
AvaI	CYCGRG	1 cut(s)	40
AvaII	GGWCC	1 cut(s)	169
AvrII	CCTAGG	1 cut(s)	80
BalI	TGGCCA	1 cut(s)	50
BauI	CACGAG	1 cut(s)	292
BbvI	GCAGC	2 cut(s)	68, 98
BccI	CCATC	1 cut(s)	29
BfaI	CTAG	1 cut(s)	81
BisI	GCNGC	2 cut(s)	57, 87
BlnI	CCTAGG	1 cut(s)	80
BlsI	GCNGC	2 cut(s)	58, 88
Bme18I	GGWCC	1 cut(s)	169
BmeT110I	CYCGRG	1 cut(s)	40
BmgT120I	GGNCC	1 cut(s)	169
BmiI	GGNNCC	1 cut(s)	171
BmsI	GCATC	1 cut(s)	78
Bpu14I	TTCGAA	1 cut(s)	195
BpuEI	CTTGAG	1 cut(s)	193
BsaJI	CCNNGG	3 cut(s)	39, 80, 151
BsaWI	WCCGGW	1 cut(s)	220
Bse118I	RCCGGY	1 cut(s)	220
BseDI	CCNNGG	3 cut(s)	39, 80, 151
BseGI	GGATG	1 cut(s)	69
BseXI	GCAGC	2 cut(s)	68, 98
BshFI	GGCC	1 cut(s)	50
BshTI	ACCGGT	1 cut(s)	220
BsiHKCI	CYCGRG	1 cut(s)	40
BsiSI	CCGG	1 cut(s)	221
BsnI	GGCC	1 cut(s)	50
BsoBI	CYCGRG	1 cut(s)	40
Bsp119I	TTCGAA	1 cut(s)	195
Bsp19I	CCATGG	1 cut(s)	151
BspANI	GGCC	1 cut(s)	50
BspLI	GGNNCC	1 cut(s)	171
BspT104I	TTCGAA	1 cut(s)	195
BsrFI	RCCGGY	1 cut(s)	220
BssAI	RCCGGY	1 cut(s)	220
BssECI	CCNNGG	3 cut(s)	39, 80, 151
BssSI	CACGAG	1 cut(s)	292
BssT1I	CCWWGG	2 cut(s)	80, 151
Bst2BI	CACGAG	1 cut(s)	292
BstBI	TTCGAA	1 cut(s)	195
BstC8I	GCNNGC	1 cut(s)	128
BstDSI	CCRYGG	1 cut(s)	151
BstF5I	GGATG	1 cut(s)	69
BstMWI	GCNNNNNNNGC	1 cut(s)	56
BstV1I	GCAGC	2 cut(s)	68, 98
BsuRI	GGCC	1 cut(s)	50
BtgI	CCRYGG	1 cut(s)	151
BtsCI	GGATG	1 cut(s)	69
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	1 cut(s)	12
Cac8I	GCNNGC	1 cut(s)	128
CaiI	CAGNNNCTG	1 cut(s)	92
Cfr10I	RCCGGY	1 cut(s)	220
Cfr13I	GGNCC	1 cut(s)	169
CspAI	ACCGGT	1 cut(s)	220
CviAII	CATG	1 cut(s)	152
CviJI	RGCY	6 cut(s)	31, 50, 59, 89, 126, 264
CviKI_1	RGCY	6 cut(s)	31, 50, 59, 89, 126, 264
DraI	TTTAAA	1 cut(s)	186
EaeI	YGGCCR	1 cut(s)	48
Eco130I	CCWWGG	2 cut(s)	80, 151
Eco47I	GGWCC	1 cut(s)	169
Eco88I	CYCGRG	1 cut(s)	40
EcoO109I	RGGNCCY	1 cut(s)	169
EcoT14I	CCWWGG	2 cut(s)	80, 151
ErhI	CCWWGG	2 cut(s)	80, 151
FaeI	CATG	1 cut(s)	155
FaiI	YATR	6 cut(s)	138, 140, 153, 205, 215, 242
FalI	AAGNNNNNCTT	4 cut(s)	110, 142, 249, 281
FatI	CATG	1 cut(s)	151
Fnu4HI	GCNGC	2 cut(s)	57, 87
FokI	GGATG	1 cut(s)	56
Fsp4HI	GCNGC	2 cut(s)	57, 87
FspBI	CTAG	1 cut(s)	81
GluI	GCNGC	2 cut(s)	57, 87
HaeIII	GGCC	1 cut(s)	50
HapII	CCGG	1 cut(s)	221
Hin1II	CATG	1 cut(s)	155
HinfI	GANTC	1 cut(s)	295
HpaII	CCGG	1 cut(s)	221
HphI	GGTGA	1 cut(s)	235
Hpy166II	GTNNAC	3 cut(s)	10, 226, 232
Hpy188I	TCNGA	1 cut(s)	286
Hpy188III	TCNNGA	1 cut(s)	292
Hpy8I	GTNNAC	3 cut(s)	10, 226, 232
HpyAV	CCTTC	1 cut(s)	247
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	2 cut(s)	56, 69
HpyF10VI	GCNNNNNNNGC	1 cut(s)	56
HpySE526I	ACGT	1 cut(s)	228
Hsp92II	CATG	1 cut(s)	155
LpnPI	CCDG	3 cut(s)	105, 136, 234
Lsp1109I	GCAGC	2 cut(s)	68, 98
LweI	GCATC	1 cut(s)	78
MaeI	CTAG	1 cut(s)	81
MaeII	ACGT	1 cut(s)	228
MboII	GAAGA	3 cut(s)	259, 294, 297
MlsI	TGGCCA	1 cut(s)	50
MluCI	AATT	1 cut(s)	107
MluNI	TGGCCA	1 cut(s)	50
MlyI	GAGTC	1 cut(s)	304
MmeI	TCCRAC	1 cut(s)	309
MnlI	CCTC	3 cut(s)	49, 72, 160
Mox20I	TGGCCA	1 cut(s)	50
MscI	TGGCCA	1 cut(s)	50
MseI	TTAA	1 cut(s)	185
Msp20I	TGGCCA	1 cut(s)	50
MspI	CCGG	1 cut(s)	221
MwoI	GCNNNNNNNGC	1 cut(s)	56
NcoI	CCATGG	1 cut(s)	151
NlaIII	CATG	1 cut(s)	155
NlaIV	GGNNCC	1 cut(s)	171
NspV	TTCGAA	1 cut(s)	195
PinAI	ACCGGT	1 cut(s)	220
PkrI	GCNGC	2 cut(s)	58, 88
PleI	GAGTC	1 cut(s)	303
PpsI	GAGTC	1 cut(s)	303
PpuMI	RGGWCCY	1 cut(s)	169
Psp5II	RGGWCCY	1 cut(s)	169
PspN4I	GGNNCC	1 cut(s)	171
PspPI	GGNCC	1 cut(s)	169
PspPPI	RGGWCCY	1 cut(s)	169
PstNI	CAGNNNCTG	1 cut(s)	92
SaqAI	TTAA	1 cut(s)	185
SatI	GCNGC	2 cut(s)	57, 87
Sau96I	GGNCC	1 cut(s)	169
SchI	GAGTC	1 cut(s)	304
SetI	ASST	3 cut(s)	33, 128, 231
SfaNI	GCATC	1 cut(s)	78
SfuI	TTCGAA	1 cut(s)	195
SgrAI	CRCCGGYG	1 cut(s)	220
SinI	GGWCC	1 cut(s)	169
SmlI	CTYRAG	1 cut(s)	208
SmoI	CTYRAG	1 cut(s)	208
Sse9I	AATT	1 cut(s)	107
SspMI	CTAG	1 cut(s)	81
StyI	CCWWGG	2 cut(s)	80, 151
TaiI	ACGT	1 cut(s)	231
TaqI	TCGA	2 cut(s)	16, 195
TaqII	GACCGA	1 cut(s)	116
TasI	AATT	1 cut(s)	107
Tru1I	TTAA	1 cut(s)	185
Tru9I	TTAA	1 cut(s)	185
TscAI	CASTG	1 cut(s)	12
TseI	GCWGC	2 cut(s)	56, 86
TspDTI	ATGAA	2 cut(s)	120, 266
TspRI	CASTG	1 cut(s)	12
VpaK11BI	GGWCC	1 cut(s)	169
XapI	RAATTY	1 cut(s)	107
XmaJI	CCTAGG	1 cut(s)	80
XspI	CTAG	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.