Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00001739

Orthogroup ID

OG0000437

Physical Location & Seq

Genomic Coordinates Forward (+)

180137 .. 180730

Gene Structure 594 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom1739g00050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGACTCGTAGTTCTCAACCCGTTAGTGCAAACATCTTGGATTTCGACGACGATTTTGAGCGCACTTTGAGGAAGAAGAAGAAGAACCCAGAATCTAGTACGGCTCCCAACCTTGAGGAGGAGGAAGAGCCAACGCCAAGGGAGGAAGAAGAACCCACGGCACAAGAGGAAGAAACCATGGCAGTGGACAACCGTACAATCAAGGAGCTTTCGGCTTCGGGAATGGCCAATGCCGCACCCTTGTGCATCCAATACCCAAGGGCGGCTCAAGACAAGACCGACGAATTTGAATTGAAGTCAAGCTTGTTGCACCACATTCCAAAATTCCATGGATTATCCATGGAAGATCCCAACAAGCATTTGAAGGAGTTCGAGGTAGTGTGTTCAAGCATGACTCCAGTTAACGTTGATGGTAGCATTTTGAAGATGAAGGCTTTCCCGTTCTCACTTTTGGAGAAGGCCAAAGATTGGTTATACGAGCTAGCACCCGGAACAGTCACCTCTTGGGAGAGCATGAAGAGGGCGTTTCTTGAAAAGTTCTTTCCTACTTCAAGAGTCATTCTCTTGAGAAAGAAGATTAGTGGAATTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBF

Protein Analysis

198

Amino Acids

22.42

Weight (kDa)

5.28

Isoelectric Point (pI)

57.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Retrotrans_gag	PF03732	145 - 196	1.7e-06	Retrotransposon gag protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000437)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06105
fragaria_vesca	FvH4_1g09709 FvH4_4g02101 FvH4_4g08975 FvH4_6g23372 FvH4_6g39851 FvH4_c1g00300
malus_domestica	MD01G1176100.v1.1 MD09G1284900.v1.1 MD15G1306600.v1.1
prunus_persica	Prupe.1G227700_v2.0.a1
pyrus_communis	pycom01g00630 pycom01g01020 pycom01g01690 pycom01g01760 pycom01g04190 pycom01g04400 pycom02g18130 pycom03g10160 pycom05g06370 pycom05g08930 pycom06g05590 pycom10g06320 pycom11g14330 pycom11g15320 pycom11g16240 pycom12416g00050 pycom12420g00010 pycom12420g00120 pycom12426g00180 pycom12426g00710 pycom12531g00010 pycom1256g00020 pycom1256g00050 pycom1341g00030 pycom1353g00030 pycom13g23070 pycom13g23210 pycom13g26260 pycom13g26370 pycom13g26470 pycom13g26980 pycom14g08550 pycom14g08850 pycom1534g00040 pycom15g28760 pycom15g31230 pycom1604g00040 pycom16g21900 pycom16g26030 pycom1739g00020 pycom1739g00050 pycom17g12970 pycom17g17960 pycom17g18300 pycom17g18650 pycom2172g00020 pycom2438g00020 pycom436g00370 pycom436g00390 pycom576g00050 pycom76g00020
rosa_chinensis	RchiOBHm_Chr1g0320811 RchiOBHm_Chr2g0135321 RchiOBHm_Chr3g0485721 RchiOBHm_Chr7g0236571
rosa_multiflora	Rmu_sc0000185.1_g000007 Rmu_sc0002094.1_g000030 Rmu_sc0002764.1_g000007 Rmu_sc0002809.1_g000014 Rmu_sc0003005.1_g000007 Rmu_sc0003798.1_g000005 Rmu_sc0004646.1_g000027 Rmu_sc0004665.1_g000009 Rmu_sc0004818.1_g000001 Rmu_sc0004988.1_g000031 Rmu_sc0006373.1_g000007 Rmu_sc0007142.1_g000015 Rmu_sc0009930.1_g000001 Rmu_sc0011451.1_g000001 Rmu_sc0020424.1_g000001 Rmu_sc0036944.1_g000001 Rmu_ssc0000062.1_g000010
rosa_roxburghii	Rroxscaffold_2G00123930 Rroxscaffold_3G00231480 Rroxscaffold_6G00413880
rosa_rugosa	Rorug04G0084800
rosa_samantha	Rh3BG150500 Rh6DG232400
rosa_wichuraiana	Rw2G018400 Rw3G027860 Rw4G021220 Rw6G020670 Rw6G037970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	468
AciI	CCGC	2 cut(s)	234, 263
AclI	AACGTT	1 cut(s)	405
AclWI	GGATC	1 cut(s)	341
AcoI	YGGCCR	1 cut(s)	225
AcsI	RAATTY	3 cut(s)	284, 323, 585
AfaI	GTAC	2 cut(s)	100, 196
AfiI	CCNNNNNNNGG	3 cut(s)	118, 262, 468
AgsI	TTSAA	8 cut(s)	290, 295, 364, 387, 424, 533, 552, 590
AleI	CACNNNNGTG	1 cut(s)	241
AluBI	AGCT	3 cut(s)	208, 303, 481
AluI	AGCT	3 cut(s)	208, 303, 481
AlwI	GGATC	1 cut(s)	341
AoxI	GGCC	2 cut(s)	225, 459
ApoI	RAATTY	3 cut(s)	284, 323, 585
ArsI	GACNNNNNNTTYG	2 cut(s)	38, 70
Asp700I	GAANNNNTTC	2 cut(s)	368, 434
AspLEI	GCGC	1 cut(s)	63
AsuC2I	CCSGG	1 cut(s)	489
AsuHPI	GGTGA	1 cut(s)	490
AsuNHI	GCTAGC	1 cut(s)	481
BalI	TGGCCA	1 cut(s)	227
BccI	CCATC	1 cut(s)	404
BceAI	ACGGC	2 cut(s)	117, 174
BcnI	CCSGG	1 cut(s)	489
BfaI	CTAG	2 cut(s)	96, 482
BisI	GCNGC	2 cut(s)	234, 264
BlsI	GCNGC	2 cut(s)	235, 265
Bme1390I	CCNGG	1 cut(s)	489
BmiI	GGNNCC	1 cut(s)	105
BmrFI	CCNGG	1 cut(s)	489
BmsI	GCATC	1 cut(s)	255
BmtI	GCTAGC	1 cut(s)	485
BplI	GAGNNNNNCTC	2 cut(s)	546, 578
BpmI	CTGGAG	1 cut(s)	381
BpuEI	CTTGAG	3 cut(s)	134, 252, 586
BpuMI	CCSGG	1 cut(s)	489
BsaJI	CCNNGG	6 cut(s)	137, 156, 177, 257, 328, 339
Bsc4I	CCNNNNNNNGG	3 cut(s)	118, 262, 468
Bse1I	ACTGG	1 cut(s)	398
BseDI	CCNNGG	6 cut(s)	137, 156, 177, 257, 328, 339
BseGI	GGATG	1 cut(s)	246
BseLI	CCNNNNNNNGG	3 cut(s)	118, 262, 468
BseNI	ACTGG	1 cut(s)	398
BseRI	GAGGAG	2 cut(s)	131, 134
BshFI	GGCC	2 cut(s)	227, 461
BsiSI	CCGG	1 cut(s)	489
BslI	CCNNNNNNNGG	3 cut(s)	118, 262, 468
BsnI	GGCC	2 cut(s)	227, 461
Bsp143I	GATC	1 cut(s)	346
Bsp19I	CCATGG	3 cut(s)	177, 328, 339
BspACI	CCGC	2 cut(s)	234, 263
BspANI	GGCC	2 cut(s)	227, 461
BspLI	GGNNCC	1 cut(s)	105
BspOI	GCTAGC	1 cut(s)	485
BspPI	GGATC	1 cut(s)	341
BspQI	GCTCTTC	1 cut(s)	120
BsrI	ACTGG	1 cut(s)	398
BssECI	CCNNGG	6 cut(s)	137, 156, 177, 257, 328, 339
BssMI	GATC	1 cut(s)	346
BssT1I	CCWWGG	5 cut(s)	137, 177, 257, 328, 339
Bst4CI	ACNGT	2 cut(s)	194, 496
Bst6I	CTCTTC	2 cut(s)	120, 512
BstC8I	GCNNGC	1 cut(s)	483
BstDSI	CCRYGG	4 cut(s)	156, 177, 328, 339
BstENI	CCTNNNNNAGG	1 cut(s)	116
BstF5I	GGATG	1 cut(s)	246
BstHHI	GCGC	1 cut(s)	63
BstKTI	GATC	1 cut(s)	349
BstMBI	GATC	1 cut(s)	346
BstMWI	GCNNNNNNNGC	1 cut(s)	233
BstSCI	CCNGG	1 cut(s)	487
BstX2I	RGATCY	1 cut(s)	346
BstXI	CCANNNNNNTGG	1 cut(s)	184
BstYI	RGATCY	1 cut(s)	346
BsuRI	GGCC	2 cut(s)	227, 461
BtgI	CCRYGG	4 cut(s)	156, 177, 328, 339
BtsCI	GGATG	1 cut(s)	246
BtsI	GCAGTG	1 cut(s)	189
BtsIMutI	CAGTG	1 cut(s)	189
Cac8I	GCNNGC	1 cut(s)	483
CfoI	GCGC	1 cut(s)	63
Csp6I	GTAC	2 cut(s)	99, 195
CviAII	CATG	5 cut(s)	178, 329, 340, 391, 514
CviQI	GTAC	2 cut(s)	99, 195
DpnI	GATC	1 cut(s)	348
DpnII	GATC	1 cut(s)	346
EaeI	YGGCCR	1 cut(s)	225
Eam1104I	CTCTTC	2 cut(s)	120, 512
EarI	CTCTTC	2 cut(s)	120, 512
Eco130I	CCWWGG	5 cut(s)	137, 177, 257, 328, 339
EcoNI	CCTNNNNNAGG	1 cut(s)	116
EcoRI	GAATTC	1 cut(s)	585
EcoT14I	CCWWGG	5 cut(s)	137, 177, 257, 328, 339
ErhI	CCWWGG	5 cut(s)	137, 177, 257, 328, 339
FaeI	CATG	5 cut(s)	181, 332, 343, 394, 517
FaiI	YATR	6 cut(s)	179, 330, 341, 392, 475, 515
FalI	AAGNNNNNCTT	2 cut(s)	287, 319
FatI	CATG	5 cut(s)	177, 328, 339, 390, 513
Fnu4HI	GCNGC	2 cut(s)	234, 264
FokI	GGATG	1 cut(s)	233
Fsp4HI	GCNGC	2 cut(s)	234, 264
FspBI	CTAG	2 cut(s)	96, 482
GlaI	GCGC	1 cut(s)	62
GluI	GCNGC	2 cut(s)	234, 264
GsuI	CTGGAG	1 cut(s)	381
HaeIII	GGCC	2 cut(s)	227, 461
HapII	CCGG	1 cut(s)	489
HhaI	GCGC	1 cut(s)	63
Hin1II	CATG	5 cut(s)	181, 332, 343, 394, 517
Hin6I	GCGC	1 cut(s)	61
HinP1I	GCGC	1 cut(s)	61
HincII	GTYRAC	1 cut(s)	403
HindII	GTYRAC	1 cut(s)	403
HindIII	AAGCTT	1 cut(s)	301
HinfI	GANTC	4 cut(s)	4, 92, 394, 555
HpaI	GTTAAC	1 cut(s)	403
HpaII	CCGG	1 cut(s)	489
HphI	GGTGA	1 cut(s)	490
Hpy166II	GTNNAC	2 cut(s)	187, 403
Hpy188III	TCNNGA	5 cut(s)	219, 269, 530, 552, 565
Hpy8I	GTNNAC	2 cut(s)	187, 403
Hpy99I	CGWCG	3 cut(s)	50, 53, 284
HpyAV	CCTTC	3 cut(s)	358, 424, 451
HpyCH4III	ACNGT	2 cut(s)	194, 496
HpyCH4IV	ACGT	1 cut(s)	405
HpyCH4V	TGCA	3 cut(s)	29, 246, 310
HpyF10VI	GCNNNNNNNGC	1 cut(s)	233
HpySE526I	ACGT	1 cut(s)	405
Hsp92II	CATG	5 cut(s)	181, 332, 343, 394, 517
HspAI	GCGC	1 cut(s)	61
KspAI	GTTAAC	1 cut(s)	403
Kzo9I	GATC	1 cut(s)	346
LguI	GCTCTTC	1 cut(s)	120
LmnI	GCTCC	2 cut(s)	109, 205
LpnPI	CCDG	3 cut(s)	102, 411, 502
LweI	GCATC	1 cut(s)	255
MaeI	CTAG	2 cut(s)	96, 482
MaeII	ACGT	1 cut(s)	405
MaeIII	GTNAC	1 cut(s)	496
MalI	GATC	1 cut(s)	348
MboI	GATC	1 cut(s)	346
MflI	RGATCY	1 cut(s)	346
MlsI	TGGCCA	1 cut(s)	227
MluCI	AATT	4 cut(s)	284, 290, 323, 585
MluNI	TGGCCA	1 cut(s)	227
MlyI	GAGTC	2 cut(s)	388, 564
MnlI	CCTC	9 cut(s)	63, 109, 112, 115, 136, 160, 367, 511, 513
Mox20I	TGGCCA	1 cut(s)	227
MroXI	GAANNNNTTC	2 cut(s)	368, 434
MscI	TGGCCA	1 cut(s)	227
MseI	TTAA	1 cut(s)	402
MslI	CAYNNNNRTG	2 cut(s)	182, 241
Msp20I	TGGCCA	1 cut(s)	227
MspI	CCGG	1 cut(s)	489
MspR9I	CCNGG	1 cut(s)	489
MwoI	GCNNNNNNNGC	1 cut(s)	233
NciI	CCSGG	1 cut(s)	489
NcoI	CCATGG	3 cut(s)	177, 328, 339
NdeII	GATC	1 cut(s)	346
NheI	GCTAGC	1 cut(s)	481
NlaIII	CATG	5 cut(s)	181, 332, 343, 394, 517
NlaIV	GGNNCC	1 cut(s)	105
NmuCI	GTSAC	1 cut(s)	496
OliI	CACNNNNGTG	1 cut(s)	241
PciSI	GCTCTTC	1 cut(s)	120
PdmI	GAANNNNTTC	2 cut(s)	368, 434
PfeI	GAWTC	1 cut(s)	92
PflMI	CCANNNNNTGG	1 cut(s)	468
PkrI	GCNGC	2 cut(s)	235, 265
PleI	GAGTC	2 cut(s)	388, 563
PpsI	GAGTC	2 cut(s)	388, 563
Psp1406I	AACGTT	1 cut(s)	405
PspN4I	GGNNCC	1 cut(s)	105
PsuI	RGATCY	1 cut(s)	346
RsaI	GTAC	2 cut(s)	100, 196
RsaNI	GTAC	2 cut(s)	99, 195
RseI	CAYNNNNRTG	2 cut(s)	182, 241
SapI	GCTCTTC	1 cut(s)	120
SaqAI	TTAA	1 cut(s)	402
SatI	GCNGC	2 cut(s)	234, 264
Sau3AI	GATC	1 cut(s)	346
SchI	GAGTC	2 cut(s)	388, 564
ScrFI	CCNGG	1 cut(s)	489
SetI	ASST	7 cut(s)	114, 210, 305, 378, 408, 483, 503
SfaNI	GCATC	1 cut(s)	255
SmiMI	CAYNNNNRTG	2 cut(s)	182, 241
SmlI	CTYRAG	3 cut(s)	113, 267, 565
SmoI	CTYRAG	3 cut(s)	113, 267, 565
Sse9I	AATT	4 cut(s)	284, 290, 323, 585
SsiI	CCGC	2 cut(s)	234, 263
SspMI	CTAG	2 cut(s)	96, 482
StyD4I	CCNGG	1 cut(s)	487
StyI	CCWWGG	5 cut(s)	137, 177, 257, 328, 339
TaaI	ACNGT	2 cut(s)	194, 496
TaiI	ACGT	1 cut(s)	408
TaqI	TCGA	2 cut(s)	45, 372
TaqII	GACCGA	1 cut(s)	293
TasI	AATT	4 cut(s)	284, 290, 323, 585
TauI	GCSGC	2 cut(s)	236, 266
TfiI	GAWTC	1 cut(s)	92
Tru1I	TTAA	1 cut(s)	402
Tru9I	TTAA	1 cut(s)	402
TscAI	CASTG	1 cut(s)	189
TseFI	GTSAC	1 cut(s)	496
Tsp45I	GTSAC	1 cut(s)	496
TspDTI	ATGAA	2 cut(s)	443, 530
TspRI	CASTG	1 cut(s)	189
Van91I	CCANNNNNTGG	1 cut(s)	468
XagI	CCTNNNNNAGG	1 cut(s)	116
XapI	RAATTY	3 cut(s)	284, 323, 585
XmnI	GAANNNNTTC	2 cut(s)	368, 434
XspI	CTAG	2 cut(s)	96, 482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.