transposition, RNA-mediated
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 400 |
| AciI | CCGC | 2 cut(s) | 211, 1472 |
| AclWI | GGATC | 1 cut(s) | 1502 |
| AcsI | RAATTY | 1 cut(s) | 297 |
| AfaI | GTAC | 3 cut(s) | 132, 798, 935 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 301, 314, 486, 503, 1357 |
| AflII | CTTAAG | 2 cut(s) | 791, 1397 |
| AflIII | ACRYGT | 1 cut(s) | 393 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 663, 695 |
| AleI | CACNNNNGTG | 1 cut(s) | 525 |
| AluBI | AGCT | 9 cut(s) | 338, 542, 582, 790, 815, 890, 1265, 1405, 1489 |
| AluI | AGCT | 9 cut(s) | 338, 542, 582, 790, 815, 890, 1265, 1405, 1489 |
| Alw21I | GWGCWC | 1 cut(s) | 127 |
| Alw44I | GTGCAC | 1 cut(s) | 123 |
| AlwI | GGATC | 1 cut(s) | 1502 |
| Aor13HI | TCCGGA | 1 cut(s) | 400 |
| AoxI | GGCC | 1 cut(s) | 1184 |
| ApaLI | GTGCAC | 1 cut(s) | 123 |
| ApoI | RAATTY | 1 cut(s) | 297 |
| AspS9I | GGNCC | 1 cut(s) | 1422 |
| AsuC2I | CCSGG | 1 cut(s) | 480 |
| AsuHPI | GGTGA | 2 cut(s) | 279, 1195 |
| AvaII | GGWCC | 1 cut(s) | 1422 |
| BaeGI | GKGCMC | 1 cut(s) | 127 |
| BanII | GRGCYC | 1 cut(s) | 1537 |
| BbsI | GAAGAC | 1 cut(s) | 919 |
| Bbv12I | GWGCWC | 1 cut(s) | 127 |
| BccI | CCATC | 1 cut(s) | 477 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 409, 443 |
| BciVI | GTATCC | 1 cut(s) | 408 |
| BclI | TGATCA | 1 cut(s) | 1548 |
| BcnI | CCSGG | 1 cut(s) | 480 |
| BfaI | CTAG | 4 cut(s) | 309, 627, 812, 1319 |
| BfrI | CTTAAG | 2 cut(s) | 791, 1397 |
| BfuI | GTATCC | 1 cut(s) | 408 |
| Bme1390I | CCNGG | 1 cut(s) | 480 |
| Bme18I | GGWCC | 1 cut(s) | 1422 |
| BmgT120I | GGNCC | 1 cut(s) | 1422 |
| BmiI | GGNNCC | 4 cut(s) | 306, 491, 972, 1536 |
| BmrFI | CCNGG | 1 cut(s) | 480 |
| BmrI | ACTGGG | 1 cut(s) | 972 |
| BmsI | GCATC | 2 cut(s) | 293, 1351 |
| BmuI | ACTGGG | 1 cut(s) | 972 |
| BpiI | GAAGAC | 1 cut(s) | 919 |
| BpuEI | CTTGAG | 1 cut(s) | 1245 |
| BpuMI | CCSGG | 1 cut(s) | 480 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1346 |
| BsaJI | CCNNGG | 5 cut(s) | 93, 327, 872, 965, 1134 |
| BsaWI | WCCGGW | 1 cut(s) | 400 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 301, 314, 486, 503, 1357 |
| Bse1I | ACTGG | 1 cut(s) | 978 |
| Bse3DI | GCAATG | 1 cut(s) | 422 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1346 |
| BseAI | TCCGGA | 1 cut(s) | 400 |
| BseDI | CCNNGG | 5 cut(s) | 93, 327, 872, 965, 1134 |
| BseGI | GGATG | 5 cut(s) | 19, 488, 1347, 1366, 1444 |
| BseJI | GATNNNNATC | 1 cut(s) | 1346 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 301, 314, 486, 503, 1357 |
| BseMI | GCAATG | 1 cut(s) | 422 |
| BseNI | ACTGG | 1 cut(s) | 978 |
| BseSI | GKGCMC | 1 cut(s) | 127 |
| BshFI | GGCC | 1 cut(s) | 1186 |
| BsiHKAI | GWGCWC | 1 cut(s) | 127 |
| BsiSI | CCGG | 2 cut(s) | 401, 480 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 301, 314, 486, 503, 1357 |
| BsnI | GGCC | 1 cut(s) | 1186 |
| Bsp1286I | GDGCHC | 2 cut(s) | 127, 1537 |
| Bsp13I | TCCGGA | 1 cut(s) | 400 |
| Bsp1407I | TGTACA | 1 cut(s) | 933 |
| Bsp143I | GATC | 5 cut(s) | 27, 759, 992, 1507, 1548 |
| Bsp19I | CCATGG | 1 cut(s) | 327 |
| BspACI | CCGC | 2 cut(s) | 211, 1472 |
| BspANI | GGCC | 1 cut(s) | 1186 |
| BspEI | TCCGGA | 1 cut(s) | 400 |
| BspLI | GGNNCC | 4 cut(s) | 306, 491, 972, 1536 |
| BspPI | GGATC | 1 cut(s) | 1502 |
| BspTI | CTTAAG | 2 cut(s) | 791, 1397 |
| BsrDI | GCAATG | 1 cut(s) | 422 |
| BsrGI | TGTACA | 1 cut(s) | 933 |
| BsrI | ACTGG | 1 cut(s) | 978 |
| BssECI | CCNNGG | 5 cut(s) | 93, 327, 872, 965, 1134 |
| BssMI | GATC | 5 cut(s) | 27, 759, 992, 1507, 1548 |
| BssT1I | CCWWGG | 4 cut(s) | 327, 872, 965, 1134 |
| Bst4CI | ACNGT | 1 cut(s) | 527 |
| Bst6I | CTCTTC | 1 cut(s) | 113 |
| BstAFI | CTTAAG | 2 cut(s) | 791, 1397 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 611 |
| BstAUI | TGTACA | 1 cut(s) | 933 |
| BstC8I | GCNNGC | 2 cut(s) | 336, 788 |
| BstDEI | CTNAG | 2 cut(s) | 1036, 1454 |
| BstDSI | CCRYGG | 1 cut(s) | 327 |
| BstF5I | GGATG | 5 cut(s) | 19, 488, 1347, 1366, 1444 |
| BstKTI | GATC | 5 cut(s) | 30, 762, 995, 1510, 1551 |
| BstMBI | GATC | 5 cut(s) | 27, 759, 992, 1507, 1548 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 235, 611, 620, 1486, 1532 |
| BstNSI | RCATGY | 3 cut(s) | 166, 397, 940 |
| BstSCI | CCNGG | 1 cut(s) | 478 |
| BstSLI | GKGCMC | 1 cut(s) | 127 |
| BstV2I | GAAGAC | 1 cut(s) | 919 |
| BstX2I | RGATCY | 1 cut(s) | 1507 |
| BstYI | RGATCY | 1 cut(s) | 1507 |
| BsuI | GTATCC | 1 cut(s) | 408 |
| BsuRI | GGCC | 1 cut(s) | 1186 |
| BtgI | CCRYGG | 1 cut(s) | 327 |
| BtgZI | GCGATG | 1 cut(s) | 56 |
| BtsCI | GGATG | 5 cut(s) | 19, 488, 1347, 1366, 1444 |
| BtsIMutI | CAGTG | 1 cut(s) | 769 |
| Cac8I | GCNNGC | 2 cut(s) | 336, 788 |
| Cfr13I | GGNCC | 1 cut(s) | 1422 |
| Csp6I | GTAC | 3 cut(s) | 131, 797, 934 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 840, 875, 1482, 1517 |
| CviAII | CATG | 8 cut(s) | 163, 328, 394, 620, 878, 937, 1022, 1523 |
| CviQI | GTAC | 3 cut(s) | 131, 797, 934 |
| DdeI | CTNAG | 2 cut(s) | 1036, 1454 |
| DpnI | GATC | 5 cut(s) | 29, 761, 994, 1509, 1550 |
| DpnII | GATC | 5 cut(s) | 27, 759, 992, 1507, 1548 |
| Eam1104I | CTCTTC | 1 cut(s) | 113 |
| EarI | CTCTTC | 1 cut(s) | 113 |
| Eco130I | CCWWGG | 4 cut(s) | 327, 872, 965, 1134 |
| Eco24I | GRGCYC | 1 cut(s) | 1537 |
| Eco32I | GATATC | 1 cut(s) | 566 |
| Eco47I | GGWCC | 1 cut(s) | 1422 |
| EcoRV | GATATC | 1 cut(s) | 566 |
| EcoT14I | CCWWGG | 4 cut(s) | 327, 872, 965, 1134 |
| EcoT38I | GRGCYC | 1 cut(s) | 1537 |
| ErhI | CCWWGG | 4 cut(s) | 327, 872, 965, 1134 |
| FaeI | CATG | 8 cut(s) | 166, 331, 397, 623, 881, 940, 1025, 1526 |
| FatI | CATG | 8 cut(s) | 162, 327, 393, 619, 877, 936, 1021, 1522 |
| FbaI | TGATCA | 1 cut(s) | 1548 |
| FokI | GGATG | 5 cut(s) | 26, 495, 1334, 1373, 1451 |
| FriOI | GRGCYC | 1 cut(s) | 1537 |
| FspBI | CTAG | 4 cut(s) | 309, 627, 812, 1319 |
| HaeIII | GGCC | 1 cut(s) | 1186 |
| HapII | CCGG | 2 cut(s) | 401, 480 |
| Hin1II | CATG | 8 cut(s) | 166, 331, 397, 623, 881, 940, 1025, 1526 |
| HincII | GTYRAC | 1 cut(s) | 175 |
| HindII | GTYRAC | 1 cut(s) | 175 |
| HindIII | AAGCTT | 3 cut(s) | 336, 540, 788 |
| HinfI | GANTC | 7 cut(s) | 49, 68, 247, 318, 517, 826, 1246 |
| HpaII | CCGG | 2 cut(s) | 401, 480 |
| HphI | GGTGA | 2 cut(s) | 279, 1195 |
| Hpy166II | GTNNAC | 5 cut(s) | 125, 175, 383, 530, 934 |
| Hpy188I | TCNGA | 2 cut(s) | 97, 1142 |
| Hpy188III | TCNNGA | 4 cut(s) | 302, 401, 683, 1232 |
| Hpy8I | GTNNAC | 5 cut(s) | 125, 175, 383, 530, 934 |
| HpyAV | CCTTC | 9 cut(s) | 212, 280, 1075, 1111, 1176, 1216, 1327, 1429, 1438 |
| HpyCH4III | ACNGT | 1 cut(s) | 527 |
| HpyCH4V | TGCA | 9 cut(s) | 125, 196, 229, 420, 575, 1364, 1410, 1480, 1526 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 235, 611, 620, 1486, 1532 |
| HpyF3I | CTNAG | 2 cut(s) | 1036, 1454 |
| Hsp92II | CATG | 8 cut(s) | 166, 331, 397, 623, 881, 940, 1025, 1526 |
| Kpn2I | TCCGGA | 1 cut(s) | 400 |
| Ksp22I | TGATCA | 1 cut(s) | 1548 |
| Kzo9I | GATC | 5 cut(s) | 27, 759, 992, 1507, 1548 |
| LmnI | GCTCC | 8 cut(s) | 142, 304, 331, 602, 628, 970, 1402, 1540 |
| LpnPI | CCDG | 5 cut(s) | 287, 414, 493, 991, 1405 |
| LweI | GCATC | 2 cut(s) | 293, 1351 |
| MaeI | CTAG | 4 cut(s) | 309, 627, 812, 1319 |
| MaeIII | GTNAC | 3 cut(s) | 958, 1017, 1243 |
| MalI | GATC | 5 cut(s) | 29, 761, 994, 1509, 1550 |
| MboI | GATC | 5 cut(s) | 27, 759, 992, 1507, 1548 |
| MfeI | CAATTG | 1 cut(s) | 671 |
| MflI | RGATCY | 1 cut(s) | 1507 |
| MhlI | GDGCHC | 2 cut(s) | 127, 1537 |
| MluCI | AATT | 5 cut(s) | 297, 404, 499, 671, 678 |
| MlyI | GAGTC | 3 cut(s) | 327, 835, 1240 |
| MmeI | TCCRAC | 1 cut(s) | 1120 |
| MroI | TCCGGA | 1 cut(s) | 400 |
| MseI | TTAA | 7 cut(s) | 792, 902, 1044, 1068, 1304, 1344, 1398 |
| MslI | CAYNNNNRTG | 1 cut(s) | 525 |
| MspCI | CTTAAG | 2 cut(s) | 791, 1397 |
| MspI | CCGG | 2 cut(s) | 401, 480 |
| MspR9I | CCNGG | 1 cut(s) | 480 |
| MunI | CAATTG | 1 cut(s) | 671 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 235, 611, 620, 1486, 1532 |
| NciI | CCSGG | 1 cut(s) | 480 |
| NcoI | CCATGG | 1 cut(s) | 327 |
| NdeII | GATC | 5 cut(s) | 27, 759, 992, 1507, 1548 |
| NlaIII | CATG | 8 cut(s) | 166, 331, 397, 623, 881, 940, 1025, 1526 |
| NlaIV | GGNNCC | 4 cut(s) | 306, 491, 972, 1536 |
| NmeAIII | GCCGAG | 1 cut(s) | 408 |
| NmuCI | GTSAC | 2 cut(s) | 1017, 1243 |
| NspI | RCATGY | 3 cut(s) | 166, 397, 940 |
| OliI | CACNNNNGTG | 1 cut(s) | 525 |
| PciI | ACATGT | 1 cut(s) | 393 |
| PfeI | GAWTC | 4 cut(s) | 49, 68, 247, 517 |
| PfoI | TCCNGGA | 1 cut(s) | 478 |
| PleI | GAGTC | 3 cut(s) | 326, 834, 1240 |
| PpsI | GAGTC | 3 cut(s) | 326, 834, 1240 |
| PscI | ACATGT | 1 cut(s) | 393 |
| PspN4I | GGNNCC | 4 cut(s) | 306, 491, 972, 1536 |
| PspPI | GGNCC | 1 cut(s) | 1422 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 917, 949 |
| PsuI | RGATCY | 1 cut(s) | 1507 |
| RsaI | GTAC | 3 cut(s) | 132, 798, 935 |
| RsaNI | GTAC | 3 cut(s) | 131, 797, 934 |
| RseI | CAYNNNNRTG | 1 cut(s) | 525 |
| SaqAI | TTAA | 7 cut(s) | 792, 902, 1044, 1068, 1304, 1344, 1398 |
| Sau3AI | GATC | 5 cut(s) | 27, 759, 992, 1507, 1548 |
| Sau96I | GGNCC | 1 cut(s) | 1422 |
| SchI | GAGTC | 3 cut(s) | 327, 835, 1240 |
| ScrFI | CCNGG | 1 cut(s) | 480 |
| SduI | GDGCHC | 2 cut(s) | 127, 1537 |
| SfaNI | GCATC | 2 cut(s) | 293, 1351 |
| SinI | GGWCC | 1 cut(s) | 1422 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 525 |
| SmlI | CTYRAG | 3 cut(s) | 791, 1260, 1397 |
| SmoI | CTYRAG | 3 cut(s) | 791, 1260, 1397 |
| Sse9I | AATT | 5 cut(s) | 297, 404, 499, 671, 678 |
| SsiI | CCGC | 2 cut(s) | 211, 1472 |
| SspMI | CTAG | 4 cut(s) | 309, 627, 812, 1319 |
| StyD4I | CCNGG | 1 cut(s) | 478 |
| StyI | CCWWGG | 4 cut(s) | 327, 872, 965, 1134 |
| TaaI | ACNGT | 1 cut(s) | 527 |
| TaqI | TCGA | 1 cut(s) | 30 |
| TasI | AATT | 5 cut(s) | 297, 404, 499, 671, 678 |
| TatI | WGTACW | 1 cut(s) | 933 |
| TfiI | GAWTC | 4 cut(s) | 49, 68, 247, 517 |
| Tru1I | TTAA | 7 cut(s) | 792, 902, 1044, 1068, 1304, 1344, 1398 |
| Tru9I | TTAA | 7 cut(s) | 792, 902, 1044, 1068, 1304, 1344, 1398 |
| TscAI | CASTG | 1 cut(s) | 769 |
| TseFI | GTSAC | 2 cut(s) | 1017, 1243 |
| Tsp45I | GTSAC | 2 cut(s) | 1017, 1243 |
| TspDTI | ATGAA | 7 cut(s) | 51, 59, 72, 131, 894, 1170, 1194 |
| TspGWI | ACGGA | 1 cut(s) | 389 |
| TspRI | CASTG | 1 cut(s) | 769 |
| Vha464I | CTTAAG | 2 cut(s) | 791, 1397 |
| VneI | GTGCAC | 1 cut(s) | 123 |
| VpaK11BI | GGWCC | 1 cut(s) | 1422 |
| XapI | RAATTY | 1 cut(s) | 297 |
| XceI | RCATGY | 3 cut(s) | 166, 397, 940 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 500 |
| XspI | CTAG | 4 cut(s) | 309, 627, 812, 1319 |