FvH4_6g39851

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000437
Physical Location & Seq
Forward (+)
31483199 .. 31487877
4679 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g39851.t1

Sequence Viewer

Length: 255 bp
ATGCGACATCGAGGAAAGGCCGGTGCACCTCAATTGCTTGAGGAATTGACCGGACGACCTCTAGGAAGTTGGAGTCGTGTTCGGGTGACGTCAATGTCCCCCGGGTCACCACCATGCTTCATGGTGATGCTAGTCTCAAATGAAGATGACCTGAGGCAACGACACTCGTCTATACTGCACTGGTCAACGCTGGATATCGCACTTTCCGAGATGACCTTGAACTCAAGAAGGGAGAGAATATCAAGGCAGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

85

Amino Acids

9.57

Weight (kDa)

11.04

Isoelectric Point (pI)

65.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000437)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G06105
fragaria_vesca FvH4_1g09709 FvH4_4g02101 FvH4_4g08975 FvH4_6g23372 FvH4_6g39851 FvH4_c1g00300
malus_domestica MD01G1176100.v1.1 MD09G1284900.v1.1 MD15G1306600.v1.1
prunus_persica Prupe.1G227700_v2.0.a1
pyrus_communis pycom01g00630 pycom01g01020 pycom01g01690 pycom01g01760 pycom01g04190 pycom01g04400 pycom02g18130 pycom03g10160 pycom05g06370 pycom05g08930 pycom06g05590 pycom10g06320 pycom11g14330 pycom11g15320 pycom11g16240 pycom12416g00050 pycom12420g00010 pycom12420g00120 pycom12426g00180 pycom12426g00710 pycom12531g00010 pycom1256g00020 pycom1256g00050 pycom1341g00030 pycom1353g00030 pycom13g23070 pycom13g23210 pycom13g26260 pycom13g26370 pycom13g26470 pycom13g26980 pycom14g08550 pycom14g08850 pycom1534g00040 pycom15g28760 pycom15g31230 pycom1604g00040 pycom16g21900 pycom16g26030 pycom1739g00020 pycom1739g00050 pycom17g12970 pycom17g17960 pycom17g18300 pycom17g18650 pycom2172g00020 pycom2438g00020 pycom436g00370 pycom436g00390 pycom576g00050 pycom76g00020
rosa_chinensis RchiOBHm_Chr1g0320811 RchiOBHm_Chr2g0135321 RchiOBHm_Chr3g0485721 RchiOBHm_Chr7g0236571
rosa_multiflora Rmu_sc0000185.1_g000007 Rmu_sc0002094.1_g000030 Rmu_sc0002764.1_g000007 Rmu_sc0002809.1_g000014 Rmu_sc0003005.1_g000007 Rmu_sc0003798.1_g000005 Rmu_sc0004646.1_g000027 Rmu_sc0004665.1_g000009 Rmu_sc0004818.1_g000001 Rmu_sc0004988.1_g000031 Rmu_sc0006373.1_g000007 Rmu_sc0007142.1_g000015 Rmu_sc0009930.1_g000001 Rmu_sc0011451.1_g000001 Rmu_sc0020424.1_g000001 Rmu_sc0036944.1_g000001 Rmu_ssc0000062.1_g000010
rosa_roxburghii Rroxscaffold_2G00123930 Rroxscaffold_3G00231480 Rroxscaffold_6G00413880
rosa_rugosa Rorug04G0084800
rosa_samantha Rh3BG150500 Rh6DG232400
rosa_wichuraiana Rw2G018400 Rw3G027860 Rw4G021220 Rw6G020670 Rw6G037970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 94
AatII GACGTC 1 cut(s) 92
AcyI GRCGYC 1 cut(s) 89
AgsI TTSAA 1 cut(s) 220
Alw21I GWGCWC 1 cut(s) 28
Alw26I GTCTC 1 cut(s) 139
Alw44I GTGCAC 1 cut(s) 24
Ama87I CYCGRG 1 cut(s) 101
AoxI GGCC 1 cut(s) 18
ApaLI GTGCAC 1 cut(s) 24
AsuC2I CCSGG 2 cut(s) 102, 103
AsuHPI GGTGA 3 cut(s) 97, 99, 136
AvaI CYCGRG 1 cut(s) 101
AxyI CCTNAGG 1 cut(s) 152
BaeGI GKGCMC 1 cut(s) 28
Bbv12I GWGCWC 1 cut(s) 28
BcnI CCSGG 2 cut(s) 102, 103
BcoDI GTCTC 1 cut(s) 139
BfaI CTAG 2 cut(s) 62, 131
Bme1390I CCNGG 2 cut(s) 102, 103
BmeT110I CYCGRG 1 cut(s) 101
BmrFI CCNGG 2 cut(s) 102, 103
BmsI GCATC 1 cut(s) 117
BoxI GACNNNNGTC 1 cut(s) 166
BpuEI CTTGAG 2 cut(s) 59, 208
BpuMI CCSGG 2 cut(s) 102, 103
BsaHI GRCGYC 1 cut(s) 89
BsaJI CCNNGG 2 cut(s) 100, 101
BsaWI WCCGGW 1 cut(s) 50
Bse118I RCCGGY 1 cut(s) 20
Bse1I ACTGG 1 cut(s) 185
Bse21I CCTNAGG 1 cut(s) 152
BseDI CCNNGG 2 cut(s) 100, 101
BseMII CTCAG 1 cut(s) 143
BseNI ACTGG 1 cut(s) 185
BseSI GKGCMC 1 cut(s) 28
BsgI GTGCAG 1 cut(s) 161
BshFI GGCC 1 cut(s) 20
BsiHKAI GWGCWC 1 cut(s) 28
BsiHKCI CYCGRG 1 cut(s) 101
BsiSI CCGG 3 cut(s) 21, 51, 102
BslFI GGGAC 1 cut(s) 82
BsmAI GTCTC 1 cut(s) 139
BsmFI GGGAC 1 cut(s) 82
BsnI GGCC 1 cut(s) 20
BsoBI CYCGRG 1 cut(s) 101
Bsp1286I GDGCHC 1 cut(s) 28
BspANI GGCC 1 cut(s) 20
BspCNI CTCAG 1 cut(s) 144
BsrFI RCCGGY 1 cut(s) 20
BsrI ACTGG 1 cut(s) 185
BssAI RCCGGY 1 cut(s) 20
BssECI CCNNGG 2 cut(s) 100, 101
BssNI GRCGYC 1 cut(s) 89
BstACI GRCGYC 1 cut(s) 89
BstDEI CTNAG 1 cut(s) 152
BstEII GGTNACC 1 cut(s) 105
BstMAI GTCTC 1 cut(s) 139
BstPAI GACNNNNGTC 1 cut(s) 166
BstPI GGTNACC 1 cut(s) 105
BstSCI CCNGG 2 cut(s) 100, 101
BstSLI GKGCMC 1 cut(s) 28
Bsu36I CCTNAGG 1 cut(s) 152
BsuRI GGCC 1 cut(s) 20
BtsIMutI CAGTG 1 cut(s) 178
Cfr10I RCCGGY 1 cut(s) 20
Cfr9I CCCGGG 1 cut(s) 101
CviAII CATG 2 cut(s) 114, 121
CviJI RGCY 1 cut(s) 20
CviKI_1 RGCY 1 cut(s) 20
DdeI CTNAG 1 cut(s) 152
DrdI GACNNNNNNGTC 1 cut(s) 94
DseDI GACNNNNNNGTC 1 cut(s) 94
Eco32I GATATC 1 cut(s) 196
Eco81I CCTNAGG 1 cut(s) 152
Eco88I CYCGRG 1 cut(s) 101
Eco91I GGTNACC 1 cut(s) 105
EcoO65I GGTNACC 1 cut(s) 105
EcoRV GATATC 1 cut(s) 196
FaeI CATG 2 cut(s) 117, 124
FaiI YATR 3 cut(s) 115, 122, 173
FaqI GGGAC 1 cut(s) 82
FatI CATG 2 cut(s) 113, 120
FspBI CTAG 2 cut(s) 62, 131
HaeIII GGCC 1 cut(s) 20
HapII CCGG 3 cut(s) 21, 51, 102
Hin1I GRCGYC 1 cut(s) 89
Hin1II CATG 2 cut(s) 117, 124
HincII GTYRAC 1 cut(s) 186
HindII GTYRAC 1 cut(s) 186
HinfI GANTC 1 cut(s) 73
HpaII CCGG 3 cut(s) 21, 51, 102
HphI GGTGA 3 cut(s) 97, 99, 136
Hpy166II GTNNAC 2 cut(s) 26, 186
Hpy188I TCNGA 1 cut(s) 208
Hpy188III TCNNGA 1 cut(s) 225
Hpy8I GTNNAC 2 cut(s) 26, 186
HpyAV CCTTC 1 cut(s) 222
HpyCH4IV ACGT 1 cut(s) 89
HpyCH4V TGCA 2 cut(s) 26, 178
HpyF3I CTNAG 1 cut(s) 152
HpySE526I ACGT 1 cut(s) 89
Hsp92I GRCGYC 1 cut(s) 89
Hsp92II CATG 2 cut(s) 117, 124
LpnPI CCDG 6 cut(s) 34, 64, 115, 164, 166, 176
LweI GCATC 1 cut(s) 117
MaeI CTAG 2 cut(s) 62, 131
MaeII ACGT 1 cut(s) 89
MaeIII GTNAC 2 cut(s) 85, 105
MboII GAAGA 1 cut(s) 155
MfeI CAATTG 1 cut(s) 32
MhlI GDGCHC 1 cut(s) 28
MluCI AATT 2 cut(s) 32, 44
MlyI GAGTC 1 cut(s) 82
MmeI TCCRAC 1 cut(s) 50
MnlI CCTC 5 cut(s) 5, 34, 39, 69, 147
MslI CAYNNNNRTG 2 cut(s) 112, 125
MspI CCGG 3 cut(s) 21, 51, 102
MspR9I CCNGG 2 cut(s) 102, 103
MunI CAATTG 1 cut(s) 32
NciI CCSGG 2 cut(s) 102, 103
NlaIII CATG 2 cut(s) 117, 124
NmuCI GTSAC 2 cut(s) 85, 105
PcsI WCGNNNNNNNCGW 1 cut(s) 204
PleI GAGTC 1 cut(s) 81
PpsI GAGTC 1 cut(s) 81
PshAI GACNNNNGTC 1 cut(s) 166
PspEI GGTNACC 1 cut(s) 105
RseI CAYNNNNRTG 2 cut(s) 112, 125
SchI GAGTC 1 cut(s) 82
ScrFI CCNGG 2 cut(s) 102, 103
SduI GDGCHC 1 cut(s) 28
SetI ASST 5 cut(s) 31, 61, 92, 153, 218
SfaNI GCATC 1 cut(s) 117
SmaI CCCGGG 1 cut(s) 103
SmiMI CAYNNNNRTG 2 cut(s) 112, 125
SmlI CTYRAG 2 cut(s) 38, 223
SmoI CTYRAG 2 cut(s) 38, 223
Sse9I AATT 2 cut(s) 32, 44
SspMI CTAG 2 cut(s) 62, 131
StyD4I CCNGG 2 cut(s) 100, 101
TaiI ACGT 1 cut(s) 92
TaqI TCGA 1 cut(s) 10
TasI AATT 2 cut(s) 32, 44
TscAI CASTG 1 cut(s) 185
TseFI GTSAC 2 cut(s) 85, 105
Tsp45I GTSAC 2 cut(s) 85, 105
TspDTI ATGAA 2 cut(s) 109, 156
TspMI CCCGGG 1 cut(s) 101
TspRI CASTG 1 cut(s) 185
VneI GTGCAC 1 cut(s) 24
XmaI CCCGGG 1 cut(s) 101
XspI CTAG 2 cut(s) 62, 131
ZraI GACGTC 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.