Rw6G020670

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000437
Physical Location & Seq
Forward (+)
41209583 .. 41214535
4953 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G020670.1

Sequence Viewer

Length: 2724 bp
ATGTTTACTCGTAGAACTGCTCAAGGCAATCTTACCCCCTTAGATTCTGAGATAGAACGCACTTGCAGTTCGAATAGGAAACAAACGAAGGAAACTAGTTTGCCAATTAACGACACAACGGCGGGTTCTACTTCCTCACAAGGGGAGGAGCACGGGAAAACTCCACCAAACTCACCTGAACAATCAATTCACGAGGACGAAGAGAAACCCCCAAGACTCGACATGGCATTAAAGGATGCTTTTGTTCCGACAGCTTCGGAATCCCCCTCATGCATAGCTTACACACCACCTGGCAATCAGGCCTTTTCCATTCCTGTGCAACTCCTTAACTCGTTGCCTAAGTACACGGGCACGCCATCTGAGGATCCTAATGTTCACATTAGAGAATTTTTGGATATTTGCAAGCTGCAAACCATTCAGAACATCCAACCAGAAGGACTCAGGTTACTTCTATTTCCCTTTTCTTTAAAAGATGATGCAAAACGTTGGTTGTACTCGTTACCTGCAGGTATCATCACAACTTGGGATGAAATGGTGAAGAAGTTTTTGAAACAATACTTCCCCGCTCAATTGACCAAACGATTAAGGAGAGAGATTCAGAACTTCACTCAAAAGGATGGAGATACACTATATGATGCATGGGAGGAATTTCAAGAGTTGCAGAGGAAGTGTCCCCATCACAACTTCAGTCTGAATGACCTTGTCCAATTTTTCTATGATGGATTGGACATAGCTAATAGGGGCAGTGTTGATTCTGCATGTGGAGGTACTTTCATGAATAAAACAGGTCAAGAAGCATATAATCTGATTGATGATTTGGCCGACAACAATAGACAATTCTACACAAGAGATAAACGTACAAGAGGACGTGGAGTGTATGAAGTTGATTCAAGGAATCAAATGGTGGCTGTGGAAAGAAAGATCGACATGCTAATGAATGCCTTGGGCAATGGCATTAAGGCAAAACCTCAGGTATGTTCTATTTGTTCCTATTCTGATCATACTACTGATAAATGTCCTTTGTCTTCTTTGTCTGAGGAACAGGTGAATTATATGGGGCAACAAAGGCCTAAATACGACCCTTACTCGAACACGTACAATCCGGGATGGAAGGATCACCCTAACTTCCGTTGGAGCAGCAATGACAACGTGGTTCGACCTACACAAGGTGTCTACAATGGACCACCTGGATTCCAACAAGGGGCTAGGCAGCAAATTTATCAACAAGCTCCCCCTCAACAAACCTCAAGCAAGTCTTTGGAAGAACTCGTCAAGGAGATGACCATAAACACCAATGTCTTCATCCAAGAAACAAGATCTCAACTCAAGGAGCATGGTCAATCTATCAAGAACTTGGAAAGGCAGGTTGGGCAACTTGCAACAGACATGCACACTAGACTTCCTGGCACCCTCCCTAGCACAACAATTCAAAATCCTAAGGATGGACGTATGGCTGAGCTCAATGTAATCACTTTAAGGAGTGGTACACAATTGGAAAAAGCTTCTTCGCATCAAAGGGCACCCATGAAAGGTCAAGAAGGGGAGGAGCAAAGAAATATGCAGGAGGAAGAGAAAATTAATCGTTTTGGGGCTGATCAGAATGTTCATGCTTTTTCTCCTCCAAAGGTAAAAGATCCTACTCCTCATAAGTTGGTTACTTCATGTATTCCTTTTCCTCGCAGGTTCATGAGCTCTAAGAAAGATCAAGACGAGAAGGATGTCTTGGAAACTTTCCGTAAAGTCCAAGTGAACATCCCTCTTTTAGATGCCATCCAGCAAATACCTCAGTATGCAAAATTCCTTAAGGAGATATGCACCAAAAAGAGAAAATTCGAAGGGAATGAAATTGTGGCCCTTAGTGAAGAAGTCTCTGCTGTTCTTCAACGAAAGCTTCCACCAAAGCTTAAGGATCCTGGACGCTTTACGATTCCATGCACTATTGGTGCACAGAGGTTTGATCATGCTTTACTAGATTTAGGAGCTTCGATTAATTTAATGCCATATTCTTTGTTTTCAACTCTTAAACTAGGTGGGCTAAAGGAGACGATGGTGATCCTTGAACTAGCAGATCGCTCAACAGTCTATCCTATGGGAGTACTTGAAGATGTACTAGTACGTGTGGATGGATTAATTTTGCCTGCAGACTTCTTTGTTCTTAAGATGGAGGAAGTGCCTATGCCTATATCATTACCATTGATTTTGGGGCGCCCATTCATGGCCACAGCTCACACCAACATTGATGTGTTCAGAGGCACTTTGAGTATGGAGGTTTTTGGGGAGACAGTGATGTTCAAGGTGTTTGAAACCTTGAGTCCTCAAATTAATGAGCAAGATCTTTTAGGTGATGGTGGGCGGATAAGAAAAGATGTTCGATTCCTTAGCACTTGGGAATCACCTAAAGTCAAGGCATGGGATCCCGGCAATTTGGAGTTGTTAGCAATGGCAAGTAATGGTCATTCTCCACCTATTGTCAAGGAAGAGGAGGTGGCGATAACCATGCATAAGAACTTTAATGAAACCATAGCTGCTCAACATGTACTTCCATGTCATGAAGGAGGTTTGTGGATCAACCATGGAAAAATAGGAGCTCAATTGTGGAACGTTAAGGCTCAGATATATAATAGTGATGCAAAAGATGAAGGACAACCATTTATGTGGTCAGAAACAATAAGGGAAGCTTATGGAAACATTCGTGCAAAACAGTTGCTGAGAAGCAAAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 RVT_1 Retrotrans_gag rve

Protein Analysis

907

Amino Acids

102.64

Weight (kDa)

6.59

Isoelectric Point (pI)

49.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotrans_gag PF03732 151 - 243 2.3e-21 Retrotransposon gag protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000437)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G06105
fragaria_vesca FvH4_1g09709 FvH4_4g02101 FvH4_4g08975 FvH4_6g23372 FvH4_6g39851 FvH4_c1g00300
malus_domestica MD01G1176100.v1.1 MD09G1284900.v1.1 MD15G1306600.v1.1
prunus_persica Prupe.1G227700_v2.0.a1
pyrus_communis pycom01g00630 pycom01g01020 pycom01g01690 pycom01g01760 pycom01g04190 pycom01g04400 pycom02g18130 pycom03g10160 pycom05g06370 pycom05g08930 pycom06g05590 pycom10g06320 pycom11g14330 pycom11g15320 pycom11g16240 pycom12416g00050 pycom12420g00010 pycom12420g00120 pycom12426g00180 pycom12426g00710 pycom12531g00010 pycom1256g00020 pycom1256g00050 pycom1341g00030 pycom1353g00030 pycom13g23070 pycom13g23210 pycom13g26260 pycom13g26370 pycom13g26470 pycom13g26980 pycom14g08550 pycom14g08850 pycom1534g00040 pycom15g28760 pycom15g31230 pycom1604g00040 pycom16g21900 pycom16g26030 pycom1739g00020 pycom1739g00050 pycom17g12970 pycom17g17960 pycom17g18300 pycom17g18650 pycom2172g00020 pycom2438g00020 pycom436g00370 pycom436g00390 pycom576g00050 pycom76g00020
rosa_chinensis RchiOBHm_Chr1g0320811 RchiOBHm_Chr2g0135321 RchiOBHm_Chr3g0485721 RchiOBHm_Chr7g0236571
rosa_multiflora Rmu_sc0000185.1_g000007 Rmu_sc0002094.1_g000030 Rmu_sc0002764.1_g000007 Rmu_sc0002809.1_g000014 Rmu_sc0003005.1_g000007 Rmu_sc0003798.1_g000005 Rmu_sc0004646.1_g000027 Rmu_sc0004665.1_g000009 Rmu_sc0004818.1_g000001 Rmu_sc0004988.1_g000031 Rmu_sc0006373.1_g000007 Rmu_sc0007142.1_g000015 Rmu_sc0009930.1_g000001 Rmu_sc0011451.1_g000001 Rmu_sc0020424.1_g000001 Rmu_sc0036944.1_g000001 Rmu_ssc0000062.1_g000010
rosa_roxburghii Rroxscaffold_2G00123930 Rroxscaffold_3G00231480 Rroxscaffold_6G00413880
rosa_rugosa Rorug04G0084800
rosa_samantha Rh3BG150500 Rh6DG232400
rosa_wichuraiana Rw2G018400 Rw3G027860 Rw4G021220 Rw6G020670 Rw6G037970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 4 cut(s) 497, 511, 1354, 1671
AccB1I GGYRCC 3 cut(s) 1406, 1519, 2205
AccBSI CCGCTC 1 cut(s) 566
AccI GTMKAC 1 cut(s) 1173
AciI CCGC 3 cut(s) 122, 564, 2353
AclI AACGTT 2 cut(s) 484, 2601
AcoI YGGCCR 2 cut(s) 819, 2217
AcsI RAATTY 5 cut(s) 386, 647, 1215, 1796, 1829
AcuI CTGAAG 1 cut(s) 670
AcyI GRCGYC 1 cut(s) 2206
AdeI CACNNNGTG 1 cut(s) 1169
AfiI CCNNNNNNNGG 6 cut(s) 141, 1166, 1201, 1442, 1529, 2215
AflII CTTAAG 3 cut(s) 1802, 1904, 2156
AflIII ACRYGT 3 cut(s) 1092, 2116, 2533
AhlI ACTAGT 2 cut(s) 95, 2110
AjiI CACGTC 1 cut(s) 869
AjnI CCWGG 4 cut(s) 289, 1186, 1402, 1912
AjuI GAANNNNNNNTTGG 4 cut(s) 1350, 1382, 1706, 1738
Alw21I GWGCWC 5 cut(s) 153, 1461, 1694, 1948, 2590
Alw26I GTCTC 3 cut(s) 1873, 2036, 2273
Alw44I GTGCAC 1 cut(s) 1944
AlwNI CAGNNNCTG 1 cut(s) 2707
AoxI GGCC 5 cut(s) 300, 819, 1067, 1851, 2217
ApaLI GTGCAC 1 cut(s) 1944
ApeKI GCWGC 4 cut(s) 406, 1137, 1210, 2525
ApoI RAATTY 5 cut(s) 386, 647, 1215, 1796, 1829
AseI ATTAAT 4 cut(s) 1578, 1989, 2129, 2322
AspLEI GCGC 1 cut(s) 2208
AspS9I GGNCC 2 cut(s) 1181, 1852
AsuC2I CCSGG 2 cut(s) 1104, 2418
AsuHPI GGTGA 7 cut(s) 165, 547, 1057, 1109, 2062, 2354, 2385
AsuII TTCGAA 2 cut(s) 71, 1833
AvaII GGWCC 1 cut(s) 1181
AxyI CCTNAGG 2 cut(s) 969, 1437
BaeGI GKGCMC 3 cut(s) 353, 1522, 1948
BalI TGGCCA 1 cut(s) 2219
BamHI GGATCC 3 cut(s) 364, 1909, 2413
BanI GGYRCC 3 cut(s) 1406, 1519, 2205
BanII GRGCYC 3 cut(s) 1461, 1694, 2590
BauI CACGAG 1 cut(s) 191
BbsI GAAGAC 2 cut(s) 1017, 1291
Bbv12I GWGCWC 5 cut(s) 153, 1461, 1694, 1948, 2590
BbvI GCAGC 4 cut(s) 393, 1149, 1222, 2512
BceAI ACGGC 1 cut(s) 135
BcgI CGANNNNNNTGC 2 cut(s) 2479, 2513
BciT130I CCWGG 4 cut(s) 291, 1188, 1404, 1914
BclI TGATCA 3 cut(s) 997, 1594, 1957
BcnI CCSGG 2 cut(s) 1104, 2418
BcoDI GTCTC 3 cut(s) 1873, 2036, 2273
BcuI ACTAGT 2 cut(s) 95, 2110
BfaI CTAG 8 cut(s) 96, 1206, 1395, 1416, 1970, 2027, 2063, 2111
BfmI CTRYAG 2 cut(s) 504, 2139
BfoI RGCGCY 1 cut(s) 2209
BfrI CTTAAG 3 cut(s) 1802, 1904, 2156
BfuAI ACCTGC 4 cut(s) 497, 511, 1354, 1671
BglII AGATCT 2 cut(s) 1316, 2332
BisI GCNGC 4 cut(s) 407, 1138, 1211, 2526
BlpI GCTNAGC 1 cut(s) 1455
BlsI GCNGC 4 cut(s) 408, 1139, 1212, 2527
BmcAI AGTACT 1 cut(s) 2097
Bme1390I CCNGG 6 cut(s) 291, 1104, 1188, 1404, 1914, 2418
Bme18I GGWCC 1 cut(s) 1181
BmgBI CACGTC 1 cut(s) 869
BmgT120I GGNCC 2 cut(s) 1181, 1852
BmiI GGNNCC 6 cut(s) 366, 1408, 1521, 1911, 2207, 2415
BmrFI CCNGG 6 cut(s) 291, 1104, 1188, 1404, 1914, 2418
BmsI GCATC 6 cut(s) 226, 466, 625, 1519, 1756, 2617
BpiI GAAGAC 2 cut(s) 1017, 1291
Bpu10I CCTNAGC 1 cut(s) 2378
Bpu1102I GCTNAGC 1 cut(s) 1455
Bpu14I TTCGAA 2 cut(s) 71, 1833
BpuEI CTTGAG 4 cut(s) 6, 1231, 1310, 2329
BpuMI CCSGG 2 cut(s) 1104, 2418
BsaAI YACGTR 2 cut(s) 1095, 2117
BsaBI GATNNNNATC 1 cut(s) 2051
BsaHI GRCGYC 1 cut(s) 2206
BsaJI CCNNGG 2 cut(s) 942, 2572
Bsc4I CCNNNNNNNGG 6 cut(s) 141, 1166, 1201, 1442, 1529, 2215
Bse21I CCTNAGG 2 cut(s) 969, 1437
Bse3DI GCAATG 3 cut(s) 955, 1147, 2445
Bse8I GATNNNNATC 1 cut(s) 2051
BseBI CCWGG 4 cut(s) 291, 1188, 1404, 1914
BseDI CCNNGG 2 cut(s) 942, 2572
BseJI GATNNNNATC 1 cut(s) 2051
BseLI CCNNNNNNNGG 6 cut(s) 141, 1166, 1201, 1442, 1529, 2215
BseMI GCAATG 3 cut(s) 955, 1147, 2445
BseMII CTCAG 9 cut(s) 39, 351, 454, 983, 1026, 1446, 1799, 2624, 2699
BseRI GAGGAG 5 cut(s) 161, 1559, 1608, 1632, 2495
BseSI GKGCMC 3 cut(s) 353, 1522, 1948
BseXI GCAGC 4 cut(s) 393, 1149, 1222, 2512
BshFI GGCC 5 cut(s) 302, 821, 1069, 1853, 2219
BshNI GGYRCC 3 cut(s) 1406, 1519, 2205
BsiHKAI GWGCWC 5 cut(s) 153, 1461, 1694, 1948, 2590
BsiSI CCGG 2 cut(s) 1103, 2418
BslFI GGGAC 1 cut(s) 657
BslI CCNNNNNNNGG 6 cut(s) 141, 1166, 1201, 1442, 1529, 2215
BsmAI GTCTC 3 cut(s) 1873, 2036, 2273
BsmBI CGTCTC 1 cut(s) 2036
BsmFI GGGAC 1 cut(s) 657
BsmI GAATGC 1 cut(s) 943
BsnI GGCC 5 cut(s) 302, 821, 1069, 1853, 2219
Bsp119I TTCGAA 2 cut(s) 71, 1833
Bsp1286I GDGCHC 7 cut(s) 153, 353, 1461, 1522, 1694, 1948, 2590
Bsp1720I GCTNAGC 1 cut(s) 1455
Bsp19I CCATGG 1 cut(s) 2572
BspACI CCGC 3 cut(s) 122, 564, 2353
BspANI GGCC 5 cut(s) 302, 821, 1069, 1853, 2219
BspCNI CTCAG 9 cut(s) 40, 352, 453, 982, 1027, 1447, 1798, 2623, 2700
BspHI TCATGA 3 cut(s) 774, 1686, 2548
BspLI GGNNCC 6 cut(s) 366, 1408, 1521, 1911, 2207, 2415
BspMAI CTGCAG 2 cut(s) 508, 2143
BspMI ACCTGC 4 cut(s) 497, 511, 1354, 1671
BspT104I TTCGAA 2 cut(s) 71, 1833
BspT107I GGYRCC 3 cut(s) 1406, 1519, 2205
BspTI CTTAAG 3 cut(s) 1802, 1904, 2156
BsrBI CCGCTC 1 cut(s) 566
BsrDI GCAATG 3 cut(s) 955, 1147, 2445
BssECI CCNNGG 2 cut(s) 942, 2572
BssNI GRCGYC 1 cut(s) 2206
BssSI CACGAG 1 cut(s) 191
BssT1I CCWWGG 2 cut(s) 942, 2572
Bst2BI CACGAG 1 cut(s) 191
Bst2UI CCWGG 4 cut(s) 291, 1188, 1404, 1914
Bst4CI ACNGT 3 cut(s) 2080, 2284, 2703
Bst6I CTCTTC 3 cut(s) 195, 1563, 2472
BstACI GRCGYC 1 cut(s) 2206
BstAFI CTTAAG 3 cut(s) 1802, 1904, 2156
BstBAI YACGTR 2 cut(s) 1095, 2117
BstBI TTCGAA 2 cut(s) 71, 1833
BstC8I GCNNGC 3 cut(s) 353, 404, 2139
BstDSI CCRYGG 1 cut(s) 2572
BstENI CCTNNNNNAGG 1 cut(s) 1164
BstH2I RGCGCY 1 cut(s) 2209
BstHHI GCGC 1 cut(s) 2208
BstMAI GTCTC 3 cut(s) 1873, 2036, 2273
BstMWI GCNNNNNNNGC 2 cut(s) 1066, 1369
BstNI CCWGG 4 cut(s) 291, 1188, 1404, 1914
BstNSI RCATGY 4 cut(s) 762, 931, 1390, 2537
BstSCI CCNGG 6 cut(s) 289, 1102, 1186, 1402, 1912, 2416
BstSFI CTRYAG 2 cut(s) 504, 2139
BstSLI GKGCMC 3 cut(s) 353, 1522, 1948
BstV1I GCAGC 4 cut(s) 393, 1149, 1222, 2512
BstV2I GAAGAC 2 cut(s) 1017, 1291
BstX2I RGATCY 6 cut(s) 364, 1316, 1633, 1909, 2332, 2413
BstXI CCANNNNNNTGG 1 cut(s) 2655
BstYI RGATCY 6 cut(s) 364, 1316, 1633, 1909, 2332, 2413
Bsu36I CCTNAGG 2 cut(s) 969, 1437
BsuRI GGCC 5 cut(s) 302, 821, 1069, 1853, 2219
BtgI CCRYGG 1 cut(s) 2572
BtrI CACGTC 1 cut(s) 869
BtsI GCAGTG 1 cut(s) 751
BtsIMutI CAGTG 2 cut(s) 751, 2289
BveI ACCTGC 4 cut(s) 497, 511, 1354, 1671
Cac8I GCNNGC 3 cut(s) 353, 404, 2139
CaiI CAGNNNCTG 1 cut(s) 2707
CciI TCATGA 3 cut(s) 774, 1686, 2548
CfoI GCGC 1 cut(s) 2208
Cfr13I GGNCC 2 cut(s) 1181, 1852
CseI GACGC 1 cut(s) 1926
DinI GGCGCC 1 cut(s) 2207
DraI TTTAAA 1 cut(s) 468
DraIII CACNNNGTG 1 cut(s) 1169
EaeI YGGCCR 2 cut(s) 819, 2217
Eam1104I CTCTTC 3 cut(s) 195, 1563, 2472
EarI CTCTTC 3 cut(s) 195, 1563, 2472
EciI GGCGGA 1 cut(s) 2368
Ecl136II GAGCTC 3 cut(s) 1459, 1692, 2588
Eco130I CCWWGG 2 cut(s) 942, 2572
Eco147I AGGCCT 2 cut(s) 302, 1069
Eco24I GRGCYC 3 cut(s) 1461, 1694, 2590
Eco47I GGWCC 1 cut(s) 1181
Eco53kI GAGCTC 3 cut(s) 1459, 1692, 2588
Eco57I CTGAAG 1 cut(s) 670
Eco81I CCTNAGG 2 cut(s) 969, 1437
EcoICRI GAGCTC 3 cut(s) 1459, 1692, 2588
EcoNI CCTNNNNNAGG 1 cut(s) 1164
EcoRII CCWGG 4 cut(s) 289, 1186, 1402, 1912
EcoT14I CCWWGG 2 cut(s) 942, 2572
EcoT22I ATGCAT 3 cut(s) 275, 640, 2502
EcoT38I GRGCYC 3 cut(s) 1461, 1694, 2590
EgeI GGCGCC 1 cut(s) 2207
EheI GGCGCC 1 cut(s) 2207
ErhI CCWWGG 2 cut(s) 942, 2572
Esp3I CGTCTC 1 cut(s) 2036
FalI AAGNNNNNCTT 8 cut(s) 15, 47, 1240, 1272, 1706, 1738, 2662, 2694
FaqI GGGAC 1 cut(s) 657
FauI CCCGC 2 cut(s) 115, 571
FbaI TGATCA 3 cut(s) 997, 1594, 1957
FblI GTMKAC 1 cut(s) 1173
Fnu4HI GCNGC 4 cut(s) 407, 1138, 1211, 2526
FriOI GRGCYC 3 cut(s) 1461, 1694, 2590
Fsp4HI GCNGC 4 cut(s) 407, 1138, 1211, 2526
FspBI CTAG 8 cut(s) 96, 1206, 1395, 1416, 1970, 2027, 2063, 2111
GlaI GCGC 1 cut(s) 2207
GluI GCNGC 4 cut(s) 407, 1138, 1211, 2526
HaeII RGCGCY 1 cut(s) 2209
HaeIII GGCC 5 cut(s) 302, 821, 1069, 1853, 2219
HapII CCGG 2 cut(s) 1103, 2418
HgaI GACGC 1 cut(s) 1926
HhaI GCGC 1 cut(s) 2208
Hin1I GRCGYC 1 cut(s) 2206
Hin6I GCGC 1 cut(s) 2206
HinP1I GCGC 1 cut(s) 2206
HindIII AAGCTT 4 cut(s) 1500, 1889, 1901, 2676
HpaII CCGG 2 cut(s) 1103, 2418
HphI GGTGA 7 cut(s) 165, 547, 1057, 1109, 2062, 2354, 2385
Hpy166II GTNNAC 7 cut(s) 6, 345, 376, 1174, 1487, 1750, 1946
Hpy188III TCNNGA 9 cut(s) 191, 653, 775, 791, 1348, 1535, 1687, 1706, 2549
Hpy8I GTNNAC 7 cut(s) 6, 345, 376, 1174, 1487, 1750, 1946
HpyAV CCTTC 8 cut(s) 82, 428, 1105, 1532, 1708, 1829, 2546, 2633
HpyCH4III ACNGT 3 cut(s) 2080, 2284, 2703
HpyCH4IV ACGT 8 cut(s) 484, 856, 868, 1094, 1149, 1447, 2116, 2601
HpyF10VI GCNNNNNNNGC 2 cut(s) 1066, 1369
HpySE526I ACGT 8 cut(s) 484, 856, 868, 1094, 1149, 1447, 2116, 2601
Hsp92I GRCGYC 1 cut(s) 2206
HspAI GCGC 1 cut(s) 2206
KasI GGCGCC 1 cut(s) 2205
Ksp22I TGATCA 3 cut(s) 997, 1594, 1957
LmnI GCTCC 7 cut(s) 148, 1134, 1234, 1330, 1546, 1979, 2585
Lsp1109I GCAGC 4 cut(s) 393, 1149, 1222, 2512
LweI GCATC 6 cut(s) 226, 466, 625, 1519, 1756, 2617
MaeI CTAG 8 cut(s) 96, 1206, 1395, 1416, 1970, 2027, 2063, 2111
MaeII ACGT 8 cut(s) 484, 856, 868, 1094, 1149, 1447, 2116, 2601
MaeIII GTNAC 3 cut(s) 444, 498, 1654
MbiI CCGCTC 1 cut(s) 566
MfeI CAATTG 3 cut(s) 569, 1490, 2591
MflI RGATCY 6 cut(s) 364, 1316, 1633, 1909, 2332, 2413
MhlI GDGCHC 7 cut(s) 153, 353, 1461, 1522, 1694, 1948, 2590
MlsI TGGCCA 1 cut(s) 2219
MluNI TGGCCA 1 cut(s) 2219
Mly113I GGCGCC 1 cut(s) 2206
MlyI GAGTC 3 cut(s) 210, 432, 2320
MmeI TCCRAC 4 cut(s) 272, 451, 1112, 1219
Mox20I TGGCCA 1 cut(s) 2219
Mph1103I ATGCAT 3 cut(s) 275, 640, 2502
MscI TGGCCA 1 cut(s) 2219
MslI CAYNNNNRTG 4 cut(s) 314, 932, 2240, 2653
Msp20I TGGCCA 1 cut(s) 2219
MspCI CTTAAG 3 cut(s) 1802, 1904, 2156
MspI CCGG 2 cut(s) 1103, 2418
MspR9I CCNGG 6 cut(s) 291, 1104, 1188, 1404, 1914, 2418
MunI CAATTG 3 cut(s) 569, 1490, 2591
Mva1269I GAATGC 1 cut(s) 943
MvaI CCWGG 4 cut(s) 291, 1188, 1404, 1914
MwoI GCNNNNNNNGC 2 cut(s) 1066, 1369
NarI GGCGCC 1 cut(s) 2206
NciI CCSGG 2 cut(s) 1104, 2418
NcoI CCATGG 1 cut(s) 2572
NlaIV GGNNCC 6 cut(s) 366, 1408, 1521, 1911, 2207, 2415
NsiI ATGCAT 3 cut(s) 275, 640, 2502
NspI RCATGY 4 cut(s) 762, 931, 1390, 2537
NspV TTCGAA 2 cut(s) 71, 1833
PagI TCATGA 3 cut(s) 774, 1686, 2548
PceI AGGCCT 2 cut(s) 302, 1069
PciI ACATGT 1 cut(s) 2533
PctI GAATGC 1 cut(s) 943
PflFI GACNNNGTC 1 cut(s) 701
PfoI TCCNGGA 2 cut(s) 1102, 1912
PkrI GCNGC 4 cut(s) 408, 1139, 1212, 2527
PleI GAGTC 3 cut(s) 210, 432, 2319
PluTI GGCGCC 1 cut(s) 2209
PpsI GAGTC 3 cut(s) 210, 432, 2319
Ppu21I YACGTR 2 cut(s) 1095, 2117
PscI ACATGT 1 cut(s) 2533
PshBI ATTAAT 4 cut(s) 1578, 1989, 2129, 2322
Psp124BI GAGCTC 3 cut(s) 1461, 1694, 2590
Psp1406I AACGTT 2 cut(s) 484, 2601
Psp6I CCWGG 4 cut(s) 289, 1186, 1402, 1912
PspGI CCWGG 4 cut(s) 289, 1186, 1402, 1912
PspN4I GGNNCC 6 cut(s) 366, 1408, 1521, 1911, 2207, 2415
PspPI GGNCC 2 cut(s) 1181, 1852
PstI CTGCAG 2 cut(s) 508, 2143
PstNI CAGNNNCTG 1 cut(s) 2707
PsuI RGATCY 6 cut(s) 364, 1316, 1633, 1909, 2332, 2413
PsyI GACNNNGTC 1 cut(s) 701
RseI CAYNNNNRTG 4 cut(s) 314, 932, 2240, 2653
SacI GAGCTC 3 cut(s) 1461, 1694, 2590
SatI GCNGC 4 cut(s) 407, 1138, 1211, 2526
Sau96I GGNCC 2 cut(s) 1181, 1852
SbfI CCTGCAGG 1 cut(s) 508
ScaI AGTACT 1 cut(s) 2097
SchI GAGTC 3 cut(s) 210, 432, 2320
ScrFI CCNGG 6 cut(s) 291, 1104, 1188, 1404, 1914, 2418
SdaI CCTGCAGG 1 cut(s) 508
SduI GDGCHC 7 cut(s) 153, 353, 1461, 1522, 1694, 1948, 2590
SfaNI GCATC 6 cut(s) 226, 466, 625, 1519, 1756, 2617
SfcI CTRYAG 2 cut(s) 504, 2139
SfoI GGCGCC 1 cut(s) 2207
SfuI TTCGAA 2 cut(s) 71, 1833
SinI GGWCC 1 cut(s) 1181
SmiMI CAYNNNNRTG 4 cut(s) 314, 932, 2240, 2653
SmlI CTYRAG 7 cut(s) 21, 1246, 1325, 1802, 1904, 2156, 2308
SmoI CTYRAG 7 cut(s) 21, 1246, 1325, 1802, 1904, 2156, 2308
SpeI ACTAGT 2 cut(s) 95, 2110
Sse8387I CCTGCAGG 1 cut(s) 508
SseBI AGGCCT 2 cut(s) 302, 1069
SsiI CCGC 3 cut(s) 122, 564, 2353
SspDI GGCGCC 1 cut(s) 2205
SspMI CTAG 8 cut(s) 96, 1206, 1395, 1416, 1970, 2027, 2063, 2111
SstI GAGCTC 3 cut(s) 1461, 1694, 2590
StuI AGGCCT 2 cut(s) 302, 1069
StyD4I CCNGG 6 cut(s) 289, 1102, 1186, 1402, 1912, 2416
StyI CCWWGG 2 cut(s) 942, 2572
TaaI ACNGT 3 cut(s) 2080, 2284, 2703
TaiI ACGT 8 cut(s) 487, 859, 871, 1097, 1152, 1450, 2119, 2604
TaqI TCGA 8 cut(s) 71, 219, 924, 1088, 1156, 1833, 1985, 2371
TatI WGTACW 5 cut(s) 342, 492, 2095, 2107, 2536
TscAI CASTG 2 cut(s) 751, 2289
TseI GCWGC 4 cut(s) 406, 1137, 1210, 2525
TspGWI ACGGA 2 cut(s) 1118, 1724
TspRI CASTG 2 cut(s) 751, 2289
Tth111I GACNNNGTC 1 cut(s) 701
Vha464I CTTAAG 3 cut(s) 1802, 1904, 2156
VneI GTGCAC 1 cut(s) 1944
VpaK11BI GGWCC 1 cut(s) 1181
VspI ATTAAT 4 cut(s) 1578, 1989, 2129, 2322
XagI CCTNNNNNAGG 1 cut(s) 1164
XapI RAATTY 5 cut(s) 386, 647, 1215, 1796, 1829
XceI RCATGY 4 cut(s) 762, 931, 1390, 2537
XmiI GTMKAC 1 cut(s) 1173
XspI CTAG 8 cut(s) 96, 1206, 1395, 1416, 1970, 2027, 2063, 2111
ZrmI AGTACT 1 cut(s) 2097
Zsp2I ATGCAT 3 cut(s) 275, 640, 2502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.