pycom05g06370

protein kinase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0000437
Physical Location & Seq
Reverse (-)
8632693 .. 8633218
526 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g06370.1

Sequence Viewer

Length: 486 bp
ATGGAGGATCCCAATAAGCATATAAAGGAATTTGAAGTAGTATGCTCGAGTATGACACCGGTGAACGTGGACAGCAACATATTGAAGATGAAGGCTTTTCCTTTTTCTTTGTTGGAGAAGGCCAATGATTGGTTGTATGAGTTGGCTCCCGGAACTGTCACATCATGGGAGAGTATGAAGCGAGCCTTCTTAGAGAAGTTCTTTCCGACATCACGAGTCATTCTTCTTCGCAAGAAGATTAGTGGAATTCAGCAAAGCCAAGGTGAATATTTTCCAACTTATTATGAACGTTTTAAAACTCTTGTTGCTTCATGTCCACAGCTCCAAATGAAGGAGGAGCTTCTTCTTCAATATTTCTACGAAGGTCTCTTACCAATTGAACGTCAAATGTTGGATGCATCCGCGGGAGGAGCTCTAGTGGACAAGACACCCATGGATGCCAAAACTCTCATTGCTAATCGAACACCCCACGGCCACATCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 RVT_1 Retrotrans_gag rve

Protein Analysis

162

Amino Acids

18.49

Weight (kDa)

6.83

Isoelectric Point (pI)

54.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotrans_gag PF03732 32 - 124 2e-18 Retrotransposon gag protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000437)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G06105
fragaria_vesca FvH4_1g09709 FvH4_4g02101 FvH4_4g08975 FvH4_6g23372 FvH4_6g39851 FvH4_c1g00300
malus_domestica MD01G1176100.v1.1 MD09G1284900.v1.1 MD15G1306600.v1.1
prunus_persica Prupe.1G227700_v2.0.a1
pyrus_communis pycom01g00630 pycom01g01020 pycom01g01690 pycom01g01760 pycom01g04190 pycom01g04400 pycom02g18130 pycom03g10160 pycom05g06370 pycom05g08930 pycom06g05590 pycom10g06320 pycom11g14330 pycom11g15320 pycom11g16240 pycom12416g00050 pycom12420g00010 pycom12420g00120 pycom12426g00180 pycom12426g00710 pycom12531g00010 pycom1256g00020 pycom1256g00050 pycom1341g00030 pycom1353g00030 pycom13g23070 pycom13g23210 pycom13g26260 pycom13g26370 pycom13g26470 pycom13g26980 pycom14g08550 pycom14g08850 pycom1534g00040 pycom15g28760 pycom15g31230 pycom1604g00040 pycom16g21900 pycom16g26030 pycom1739g00020 pycom1739g00050 pycom17g12970 pycom17g17960 pycom17g18300 pycom17g18650 pycom2172g00020 pycom2438g00020 pycom436g00370 pycom436g00390 pycom576g00050 pycom76g00020
rosa_chinensis RchiOBHm_Chr1g0320811 RchiOBHm_Chr2g0135321 RchiOBHm_Chr3g0485721 RchiOBHm_Chr7g0236571
rosa_multiflora Rmu_sc0000185.1_g000007 Rmu_sc0002094.1_g000030 Rmu_sc0002764.1_g000007 Rmu_sc0002809.1_g000014 Rmu_sc0003005.1_g000007 Rmu_sc0003798.1_g000005 Rmu_sc0004646.1_g000027 Rmu_sc0004665.1_g000009 Rmu_sc0004818.1_g000001 Rmu_sc0004988.1_g000031 Rmu_sc0006373.1_g000007 Rmu_sc0007142.1_g000015 Rmu_sc0009930.1_g000001 Rmu_sc0011451.1_g000001 Rmu_sc0020424.1_g000001 Rmu_sc0036944.1_g000001 Rmu_ssc0000062.1_g000010
rosa_roxburghii Rroxscaffold_2G00123930 Rroxscaffold_3G00231480 Rroxscaffold_6G00413880
rosa_rugosa Rorug04G0084800
rosa_samantha Rh3BG150500 Rh6DG232400
rosa_wichuraiana Rw2G018400 Rw3G027860 Rw4G021220 Rw6G020670 Rw6G037970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 129
AccII CGCG 1 cut(s) 404
AciI CCGC 2 cut(s) 402, 404
AclI AACGTT 1 cut(s) 289
AclWI GGATC 2 cut(s) 2, 15
AcoI YGGCCR 1 cut(s) 472
AcsI RAATTY 2 cut(s) 29, 246
AfiI CCNNNNNNNGG 2 cut(s) 129, 331
AgeI ACCGGT 1 cut(s) 58
AgsI TTSAA 4 cut(s) 35, 85, 350, 380
AluBI AGCT 3 cut(s) 322, 340, 413
AluI AGCT 3 cut(s) 322, 340, 413
Alw21I GWGCWC 1 cut(s) 415
Alw26I GTCTC 1 cut(s) 371
AlwI GGATC 2 cut(s) 2, 15
Ama87I CYCGRG 1 cut(s) 46
AoxI GGCC 2 cut(s) 120, 472
ApoI RAATTY 2 cut(s) 29, 246
AsiGI ACCGGT 1 cut(s) 58
Asp700I GAANNNNTTC 1 cut(s) 270
AsuC2I CCSGG 1 cut(s) 150
AsuHPI GGTGA 2 cut(s) 73, 275
AvaI CYCGRG 1 cut(s) 46
BamHI GGATCC 1 cut(s) 7
BanII GRGCYC 1 cut(s) 415
BarI GAAGNNNNNNTAC 2 cut(s) 354, 386
BauI CACGAG 1 cut(s) 213
Bbv12I GWGCWC 1 cut(s) 415
BcnI CCSGG 1 cut(s) 150
BcoDI GTCTC 1 cut(s) 371
BfaI CTAG 1 cut(s) 416
Bme1390I CCNGG 1 cut(s) 150
BmeT110I CYCGRG 1 cut(s) 46
BmiI GGNNCC 2 cut(s) 9, 147
BmrFI CCNGG 1 cut(s) 150
BmsI GCATC 3 cut(s) 385, 407, 427
BpuMI CCSGG 1 cut(s) 150
BsaI GGTCTC 1 cut(s) 371
BsaJI CCNNGG 4 cut(s) 259, 402, 432, 469
BsaWI WCCGGW 1 cut(s) 58
BsaXI ACNNNNNCTCC 2 cut(s) 402, 432
Bsc4I CCNNNNNNNGG 2 cut(s) 129, 331
Bse118I RCCGGY 1 cut(s) 58
Bse3DI GCAATG 1 cut(s) 450
BseDI CCNNGG 4 cut(s) 259, 402, 432, 469
BseGI GGATG 3 cut(s) 398, 400, 442
BseLI CCNNNNNNNGG 2 cut(s) 129, 331
BseMI GCAATG 1 cut(s) 450
BseRI GAGGAG 2 cut(s) 350, 423
Bsh1236I CGCG 1 cut(s) 404
BshFI GGCC 2 cut(s) 122, 474
BshTI ACCGGT 1 cut(s) 58
BsiHKAI GWGCWC 1 cut(s) 415
BsiHKCI CYCGRG 1 cut(s) 46
BsiSI CCGG 2 cut(s) 59, 150
BslI CCNNNNNNNGG 2 cut(s) 129, 331
BsmAI GTCTC 1 cut(s) 371
BsnI GGCC 2 cut(s) 122, 474
Bso31I GGTCTC 1 cut(s) 371
BsoBI CYCGRG 1 cut(s) 46
Bsp1286I GDGCHC 1 cut(s) 415
Bsp143I GATC 1 cut(s) 7
Bsp19I CCATGG 1 cut(s) 432
BspACI CCGC 2 cut(s) 402, 404
BspANI GGCC 2 cut(s) 122, 474
BspFNI CGCG 1 cut(s) 404
BspLI GGNNCC 2 cut(s) 9, 147
BspPI GGATC 2 cut(s) 2, 15
BspTNI GGTCTC 1 cut(s) 371
BsrDI GCAATG 1 cut(s) 450
BsrFI RCCGGY 1 cut(s) 58
BssAI RCCGGY 1 cut(s) 58
BssECI CCNNGG 4 cut(s) 259, 402, 432, 469
BssMI GATC 1 cut(s) 7
BssSI CACGAG 1 cut(s) 213
BssT1I CCWWGG 2 cut(s) 259, 432
Bst2BI CACGAG 1 cut(s) 213
Bst4CI ACNGT 1 cut(s) 157
BstC8I GCNNGC 1 cut(s) 183
BstDEI CTNAG 1 cut(s) 190
BstDSI CCRYGG 3 cut(s) 402, 432, 469
BstF5I GGATG 3 cut(s) 398, 400, 442
BstFNI CGCG 1 cut(s) 404
BstKTI GATC 1 cut(s) 10
BstMAI GTCTC 1 cut(s) 371
BstMBI GATC 1 cut(s) 7
BstMWI GCNNNNNNNGC 1 cut(s) 410
BstSCI CCNGG 1 cut(s) 148
BstUI CGCG 1 cut(s) 404
BstX2I RGATCY 1 cut(s) 7
BstYI RGATCY 1 cut(s) 7
BsuRI GGCC 2 cut(s) 122, 474
BtgI CCRYGG 3 cut(s) 402, 432, 469
BtsCI GGATG 3 cut(s) 398, 400, 442
Cac8I GCNNGC 1 cut(s) 183
Cfr10I RCCGGY 1 cut(s) 58
Cfr42I CCGCGG 1 cut(s) 405
CspAI ACCGGT 1 cut(s) 58
CviAII CATG 4 cut(s) 165, 312, 433, 481
CviJI RGCY 9 cut(s) 95, 122, 146, 185, 258, 322, 340, 413, 474
CviKI_1 RGCY 9 cut(s) 95, 122, 146, 185, 258, 322, 340, 413, 474
DdeI CTNAG 1 cut(s) 190
DpnI GATC 1 cut(s) 9
DpnII GATC 1 cut(s) 7
DraI TTTAAA 1 cut(s) 295
EaeI YGGCCR 1 cut(s) 472
Ecl136II GAGCTC 1 cut(s) 413
Eco130I CCWWGG 2 cut(s) 259, 432
Eco24I GRGCYC 1 cut(s) 415
Eco31I GGTCTC 1 cut(s) 371
Eco53kI GAGCTC 1 cut(s) 413
Eco88I CYCGRG 1 cut(s) 46
EcoICRI GAGCTC 1 cut(s) 413
EcoRI GAATTC 1 cut(s) 246
EcoT14I CCWWGG 2 cut(s) 259, 432
EcoT22I ATGCAT 1 cut(s) 400
EcoT38I GRGCYC 1 cut(s) 415
ErhI CCWWGG 2 cut(s) 259, 432
FaeI CATG 4 cut(s) 168, 315, 436, 484
FalI AAGNNNNNCTT 2 cut(s) 170, 202
FatI CATG 4 cut(s) 164, 311, 432, 480
FauI CCCGC 1 cut(s) 397
FokI GGATG 3 cut(s) 385, 407, 449
FriOI GRGCYC 1 cut(s) 415
FspBI CTAG 1 cut(s) 416
HaeIII GGCC 2 cut(s) 122, 474
HapII CCGG 2 cut(s) 59, 150
Hin1II CATG 4 cut(s) 168, 315, 436, 484
HinfI GANTC 1 cut(s) 216
HpaII CCGG 2 cut(s) 59, 150
HphI GGTGA 2 cut(s) 73, 275
Hpy166II GTNNAC 4 cut(s) 64, 70, 317, 421
Hpy188I TCNGA 1 cut(s) 207
Hpy188III TCNNGA 1 cut(s) 213
Hpy8I GTNNAC 4 cut(s) 64, 70, 317, 421
HpyAV CCTTC 5 cut(s) 85, 112, 196, 325, 356
HpyCH4III ACNGT 1 cut(s) 157
HpyCH4IV ACGT 3 cut(s) 66, 289, 382
HpyCH4V TGCA 1 cut(s) 398
HpyF10VI GCNNNNNNNGC 1 cut(s) 410
HpyF3I CTNAG 1 cut(s) 190
HpySE526I ACGT 3 cut(s) 66, 289, 382
Hsp92II CATG 4 cut(s) 168, 315, 436, 484
KspI CCGCGG 1 cut(s) 405
Kzo9I GATC 1 cut(s) 7
LmnI GCTCC 4 cut(s) 151, 327, 337, 410
LpnPI CCDG 2 cut(s) 72, 163
LweI GCATC 3 cut(s) 385, 407, 427
MaeI CTAG 1 cut(s) 416
MaeII ACGT 3 cut(s) 66, 289, 382
MaeIII GTNAC 1 cut(s) 157
MalI GATC 1 cut(s) 9
MboI GATC 1 cut(s) 7
MboII GAAGA 6 cut(s) 97, 215, 218, 247, 335, 338
MfeI CAATTG 1 cut(s) 375
MflI RGATCY 1 cut(s) 7
MhlI GDGCHC 1 cut(s) 415
MluCI AATT 3 cut(s) 29, 246, 375
MlyI GAGTC 1 cut(s) 225
MmeI TCCRAC 4 cut(s) 93, 230, 299, 372
MnlI CCTC 2 cut(s) 328, 401
Mph1103I ATGCAT 1 cut(s) 400
MroXI GAANNNNTTC 1 cut(s) 270
MseI TTAA 1 cut(s) 294
MspA1I CMGCKG 1 cut(s) 404
MspI CCGG 2 cut(s) 59, 150
MspR9I CCNGG 1 cut(s) 150
MunI CAATTG 1 cut(s) 375
MvnI CGCG 1 cut(s) 404
MwoI GCNNNNNNNGC 1 cut(s) 410
NciI CCSGG 1 cut(s) 150
NcoI CCATGG 1 cut(s) 432
NdeII GATC 1 cut(s) 7
NlaIII CATG 4 cut(s) 168, 315, 436, 484
NlaIV GGNNCC 2 cut(s) 9, 147
NmuCI GTSAC 1 cut(s) 157
NsiI ATGCAT 1 cut(s) 400
PaeR7I CTCGAG 1 cut(s) 46
PdmI GAANNNNTTC 1 cut(s) 270
PflMI CCANNNNNTGG 1 cut(s) 129
PfoI TCCNGGA 1 cut(s) 148
PinAI ACCGGT 1 cut(s) 58
PleI GAGTC 1 cut(s) 224
PpsI GAGTC 1 cut(s) 224
Psp124BI GAGCTC 1 cut(s) 415
Psp1406I AACGTT 1 cut(s) 289
PspN4I GGNNCC 2 cut(s) 9, 147
PspXI VCTCGAGB 1 cut(s) 46
PsuI RGATCY 1 cut(s) 7
SacI GAGCTC 1 cut(s) 415
SacII CCGCGG 1 cut(s) 405
SaqAI TTAA 1 cut(s) 294
Sau3AI GATC 1 cut(s) 7
SchI GAGTC 1 cut(s) 225
ScrFI CCNGG 1 cut(s) 150
SduI GDGCHC 1 cut(s) 415
SetI ASST 8 cut(s) 69, 265, 292, 324, 342, 367, 385, 415
SfaNI GCATC 3 cut(s) 385, 407, 427
Sfr274I CTCGAG 1 cut(s) 46
Sfr303I CCGCGG 1 cut(s) 405
SgrAI CRCCGGYG 1 cut(s) 58
SgrBI CCGCGG 1 cut(s) 405
SlaI CTCGAG 1 cut(s) 46
SmlI CTYRAG 1 cut(s) 46
SmoI CTYRAG 1 cut(s) 46
Sse9I AATT 3 cut(s) 29, 246, 375
SsiI CCGC 2 cut(s) 402, 404
SspI AATATT 2 cut(s) 269, 353
SspMI CTAG 1 cut(s) 416
SstI GAGCTC 1 cut(s) 415
StyD4I CCNGG 1 cut(s) 148
StyI CCWWGG 2 cut(s) 259, 432
TaaI ACNGT 1 cut(s) 157
TaiI ACGT 3 cut(s) 69, 292, 385
TaqI TCGA 2 cut(s) 47, 460
TasI AATT 3 cut(s) 29, 246, 375
Tru1I TTAA 1 cut(s) 294
Tru9I TTAA 1 cut(s) 294
TseFI GTSAC 1 cut(s) 157
Tsp45I GTSAC 1 cut(s) 157
TspDTI ATGAA 5 cut(s) 104, 191, 300, 300, 344
Van91I CCANNNNNTGG 1 cut(s) 129
XapI RAATTY 2 cut(s) 29, 246
XhoI CTCGAG 1 cut(s) 46
XmnI GAANNNNTTC 1 cut(s) 270
XspI CTAG 1 cut(s) 416
Zsp2I ATGCAT 1 cut(s) 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.