pycom17g17960

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Forward (+)
15483192 .. 15484441
1250 bp
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UTR
Exon/CDS
Intron
pycom17g17960.2

Sequence Viewer

Length: 888 bp
ATGCGTATTCCATTCAATCCAACGAATTTAGGGAAATCTGAAAAATCAATATTGTATGCAAGTGTAACATGTGTGAGAAGAACCCCTTGGCTATTCCATCATCCATATTTTCATCACATTCATATTTACATTTTGCCTTTAATTATATTCTGTCCATTTAATTTAATATCTCGTATTTGTTTTATTTTTGTATCTTTAAGCTTTTGGAGTCATAAACAGTTTCAAATCCGTCTAAATCAAGTTCTAAGTTTCTATTTGAGTCAGTTTGATTGTTTTAGGCAGTTTGAAGTATTTACATTTAGTTTTTGTGTTTTCAAGTCAATTCAAATTAGATTAGCACCCCTAGTTAATCCCCGGTTAGAACGATCCCTACTTACATCATTACTACAATTGTCACAAATAGGTTCAACTAGAAATTCTTCTTGTTCTTCTTGCTTATTAAGCACTAAAATTTTGTTACAGCAAGTGTCGGTACATCCGAACTTGATGATAATTCTAAATCCTTATCTGATTGACTATAATGGCTTTCTTAACTTTACATTTATTGGCATAATGGCCGAATTTGCCACACTTGTAGCATTTTCCCTTTATACCTTGATGTTGTTTGTCAGGTTTTCGAAAAGATTTCTTTTTAGGGTTTTCATAAAATTTATTGGACTGAAAAGGTTTGGTGGACGACCTTGGTTTGTATTTATGATATCTGGAATGTGGTTTAGAATACTTGCTCATGTGTTGAGCTTTCTTCTTCTTGTGGGAAGAGGCTATAAGAGTGACTTGTTTAGAAATCTTCATATCGATACACATTTTCAATCATTCCTTCTGGATAACATTAACTATGTTCCCATAAGTAAGGGTATGATAAGGTATGATACCTTCTTCATTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

296

Amino Acids

34.89

Weight (kDa)

10.07

Isoelectric Point (pI)

39.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000437)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G06105
fragaria_vesca FvH4_1g09709 FvH4_4g02101 FvH4_4g08975 FvH4_6g23372 FvH4_6g39851 FvH4_c1g00300
malus_domestica MD01G1176100.v1.1 MD09G1284900.v1.1 MD15G1306600.v1.1
prunus_persica Prupe.1G227700_v2.0.a1
pyrus_communis pycom01g00630 pycom01g01020 pycom01g01690 pycom01g01760 pycom01g04190 pycom01g04400 pycom02g18130 pycom03g10160 pycom05g06370 pycom05g08930 pycom06g05590 pycom10g06320 pycom11g14330 pycom11g15320 pycom11g16240 pycom12416g00050 pycom12420g00010 pycom12420g00120 pycom12426g00180 pycom12426g00710 pycom12531g00010 pycom1256g00020 pycom1256g00050 pycom1341g00030 pycom1353g00030 pycom13g23070 pycom13g23210 pycom13g26260 pycom13g26370 pycom13g26470 pycom13g26980 pycom14g08550 pycom14g08850 pycom1534g00040 pycom15g28760 pycom15g31230 pycom1604g00040 pycom16g21900 pycom16g26030 pycom1739g00020 pycom1739g00050 pycom17g12970 pycom17g17960 pycom17g18300 pycom17g18650 pycom2172g00020 pycom2438g00020 pycom436g00370 pycom436g00390 pycom576g00050 pycom76g00020
rosa_chinensis RchiOBHm_Chr1g0320811 RchiOBHm_Chr2g0135321 RchiOBHm_Chr3g0485721 RchiOBHm_Chr7g0236571
rosa_multiflora Rmu_sc0000185.1_g000007 Rmu_sc0002094.1_g000030 Rmu_sc0002764.1_g000007 Rmu_sc0002809.1_g000014 Rmu_sc0003005.1_g000007 Rmu_sc0003798.1_g000005 Rmu_sc0004646.1_g000027 Rmu_sc0004665.1_g000009 Rmu_sc0004818.1_g000001 Rmu_sc0004988.1_g000031 Rmu_sc0006373.1_g000007 Rmu_sc0007142.1_g000015 Rmu_sc0009930.1_g000001 Rmu_sc0011451.1_g000001 Rmu_sc0020424.1_g000001 Rmu_sc0036944.1_g000001 Rmu_ssc0000062.1_g000010
rosa_roxburghii Rroxscaffold_2G00123930 Rroxscaffold_3G00231480 Rroxscaffold_6G00413880
rosa_rugosa Rorug04G0084800
rosa_samantha Rh3BG150500 Rh6DG232400
rosa_wichuraiana Rw2G018400 Rw3G027860 Rw4G021220 Rw6G020670 Rw6G037970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 360
AcoI YGGCCR 1 cut(s) 555
AcsI RAATTY 5 cut(s) 25, 415, 450, 560, 647
AfaI GTAC 1 cut(s) 474
AflIII ACRYGT 1 cut(s) 68
AgsI TTSAA 7 cut(s) 16, 224, 287, 316, 326, 408, 809
AjuI GAANNNNNNNTTGG 2 cut(s) 70, 102
AluBI AGCT 2 cut(s) 201, 738
AluI AGCT 2 cut(s) 201, 738
AlwI GGATC 1 cut(s) 360
AoxI GGCC 1 cut(s) 555
ApoI RAATTY 5 cut(s) 25, 415, 450, 560, 647
Asp700I GAANNNNTTC 1 cut(s) 418
AsuC2I CCSGG 1 cut(s) 355
AsuII TTCGAA 1 cut(s) 617
BarI GAAGNNNNNNTAC 1 cut(s) 857
BccI CCATC 1 cut(s) 105
BcnI CCSGG 1 cut(s) 355
BfaI CTAG 2 cut(s) 344, 411
Bme1390I CCNGG 1 cut(s) 355
BmrFI CCNGG 1 cut(s) 355
Bpu14I TTCGAA 1 cut(s) 617
BpuMI CCSGG 1 cut(s) 355
Bsa29I ATCGAT 1 cut(s) 795
BsaJI CCNNGG 3 cut(s) 86, 353, 680
BseCI ATCGAT 1 cut(s) 795
BseDI CCNNGG 3 cut(s) 86, 353, 680
BseGI GGATG 2 cut(s) 100, 475
BshFI GGCC 1 cut(s) 557
BshVI ATCGAT 1 cut(s) 795
BsiSI CCGG 1 cut(s) 355
BsnI GGCC 1 cut(s) 557
Bsp119I TTCGAA 1 cut(s) 617
Bsp143I GATC 1 cut(s) 365
BspANI GGCC 1 cut(s) 557
BspDI ATCGAT 1 cut(s) 795
BspPI GGATC 1 cut(s) 360
BspT104I TTCGAA 1 cut(s) 617
BssECI CCNNGG 3 cut(s) 86, 353, 680
BssMI GATC 1 cut(s) 365
BssT1I CCWWGG 2 cut(s) 86, 680
Bst4CI ACNGT 1 cut(s) 219
Bst6I CTCTTC 1 cut(s) 751
BstBI TTCGAA 1 cut(s) 617
BstDEI CTNAG 1 cut(s) 245
BstF5I GGATG 2 cut(s) 100, 475
BstKTI GATC 1 cut(s) 368
BstMBI GATC 1 cut(s) 365
BstMWI GCNNNNNNNGC 2 cut(s) 441, 563
BstNSI RCATGY 1 cut(s) 72
BstSCI CCNGG 1 cut(s) 353
Bsu15I ATCGAT 1 cut(s) 795
BsuRI GGCC 1 cut(s) 557
BsuTUI ATCGAT 1 cut(s) 795
BtsCI GGATG 2 cut(s) 100, 475
ClaI ATCGAT 1 cut(s) 795
Csp6I GTAC 1 cut(s) 473
CviAII CATG 2 cut(s) 69, 728
CviJI RGCY 6 cut(s) 91, 201, 525, 557, 738, 762
CviKI_1 RGCY 6 cut(s) 91, 201, 525, 557, 738, 762
CviQI GTAC 1 cut(s) 473
DdeI CTNAG 1 cut(s) 245
DpnI GATC 1 cut(s) 367
DpnII GATC 1 cut(s) 365
EaeI YGGCCR 1 cut(s) 555
Eam1104I CTCTTC 1 cut(s) 751
EarI CTCTTC 1 cut(s) 751
Eco130I CCWWGG 2 cut(s) 86, 680
Eco32I GATATC 1 cut(s) 699
EcoRV GATATC 1 cut(s) 699
EcoT14I CCWWGG 2 cut(s) 86, 680
ErhI CCWWGG 2 cut(s) 86, 680
FaeI CATG 2 cut(s) 72, 731
FalI AAGNNNNNCTT 4 cut(s) 70, 102, 758, 790
FatI CATG 2 cut(s) 68, 727
FokI GGATG 2 cut(s) 87, 462
FspBI CTAG 2 cut(s) 344, 411
HaeIII GGCC 1 cut(s) 557
HapII CCGG 1 cut(s) 355
Hin1II CATG 2 cut(s) 72, 731
HindIII AAGCTT 1 cut(s) 199
HinfI GANTC 2 cut(s) 208, 259
HpaII CCGG 1 cut(s) 355
Hpy166II GTNNAC 1 cut(s) 674
Hpy188I TCNGA 3 cut(s) 40, 480, 510
Hpy188III TCNNGA 2 cut(s) 702, 821
Hpy8I GTNNAC 1 cut(s) 674
HpyAV CCTTC 2 cut(s) 827, 883
HpyCH4III ACNGT 1 cut(s) 219
HpyCH4V TGCA 1 cut(s) 59
HpyF10VI GCNNNNNNNGC 2 cut(s) 441, 563
HpyF3I CTNAG 1 cut(s) 245
Hsp92II CATG 2 cut(s) 72, 731
Kzo9I GATC 1 cut(s) 365
LpnPI CCDG 4 cut(s) 368, 595, 687, 806
MaeI CTAG 2 cut(s) 344, 411
MaeIII GTNAC 4 cut(s) 64, 393, 456, 770
MalI GATC 1 cut(s) 367
MboI GATC 1 cut(s) 365
MboII GAAGA 8 cut(s) 90, 411, 420, 734, 737, 768, 779, 868
MfeI CAATTG 1 cut(s) 389
MlyI GAGTC 2 cut(s) 217, 268
MmeI TCCRAC 1 cut(s) 44
MnlI CCTC 1 cut(s) 752
MroXI GAANNNNTTC 1 cut(s) 418
MseI TTAA 8 cut(s) 140, 159, 164, 197, 348, 440, 531, 831
MspI CCGG 1 cut(s) 355
MspR9I CCNGG 1 cut(s) 355
MunI CAATTG 1 cut(s) 389
MwoI GCNNNNNNNGC 2 cut(s) 441, 563
NciI CCSGG 1 cut(s) 355
NdeII GATC 1 cut(s) 365
NlaIII CATG 2 cut(s) 72, 731
NmuCI GTSAC 2 cut(s) 393, 770
NspI RCATGY 1 cut(s) 72
NspV TTCGAA 1 cut(s) 617
PciI ACATGT 1 cut(s) 68
PcsI WCGNNNNNNNCGW 1 cut(s) 476
PdmI GAANNNNTTC 1 cut(s) 418
PleI GAGTC 2 cut(s) 216, 267
PpsI GAGTC 2 cut(s) 216, 267
PscI ACATGT 1 cut(s) 68
PsrI GAACNNNNNNTAC 2 cut(s) 354, 386
RsaI GTAC 1 cut(s) 474
RsaNI GTAC 1 cut(s) 473
SaqAI TTAA 8 cut(s) 140, 159, 164, 197, 348, 440, 531, 831
Sau3AI GATC 1 cut(s) 365
SchI GAGTC 2 cut(s) 217, 268
ScrFI CCNGG 1 cut(s) 355
SetI ASST 9 cut(s) 203, 406, 596, 614, 668, 682, 740, 866, 875
SfuI TTCGAA 1 cut(s) 617
SspI AATATT 1 cut(s) 51
SspMI CTAG 2 cut(s) 344, 411
StyD4I CCNGG 1 cut(s) 353
StyI CCWWGG 2 cut(s) 86, 680
TaaI ACNGT 1 cut(s) 219
TaqI TCGA 2 cut(s) 617, 795
Tru1I TTAA 8 cut(s) 140, 159, 164, 197, 348, 440, 531, 831
Tru9I TTAA 8 cut(s) 140, 159, 164, 197, 348, 440, 531, 831
TseFI GTSAC 2 cut(s) 393, 770
Tsp45I GTSAC 2 cut(s) 393, 770
TspDTI ATGAA 5 cut(s) 101, 110, 631, 779, 868
TspGWI ACGGA 1 cut(s) 218
XapI RAATTY 5 cut(s) 25, 415, 450, 560, 647
XceI RCATGY 1 cut(s) 72
XmnI GAANNNNTTC 1 cut(s) 418
XspI CTAG 2 cut(s) 344, 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.