pycom17g18300

ABC transporter C family member

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Forward (+)
15688947 .. 15690466
1520 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g18300.7

Sequence Viewer

Length: 1107 bp
ATGGAGATGAACCCCTTAGCTAGCCTTCATTCCATTCATTCTATCACATTCACATTTACATTTTGCTTTAATTTACAATCTGTACATTTTAGCTTAATTTCGTATAAAACTCAATCCCCCTTTACTTTAATTGTTTTGATTCATTTTATTTCCCAATTTCGTCCAAATTTGTGTTTGTACTCAAATCTGCCCAGAAAGTGGTTTTTAGGCAGATTTGAGTGTGTTTGTGTTGTTTTGAGTCTTTTGGTTTGTTTTAGTGTTTTAAAGTTTAGTTTTACATTCTTTGAGTCTAGTTTAGTGTTTTATATTACGTTTTTACCCCCGGTGCAGATCGATCCCTACTTATACATATACTACAATTTGACGAAAAGAGGGTTTAATTTGTGTGCGTATAAATCTCCAATAACGGGGACAAAGATTTTTGGGACTCGATGGTATTACAACTTATCGAACTACATTATCTCAATTGAAGGGATAAAACAATTCATGATGATGCCGCCAGAGCCTCCAACGATTGTGGAGGATAAGAGGCCACCATATTCATGGCCTACCAAGGGTAGGATAGTGCTCTATTCTCTGAAGGTAATATATGTTGGAACTTGTGTTTATGAGGGACTCCCAAGTTTGAAAAGAATTGAGTCAAAGTCATGGACCTTGGGCCTTAGACTTGGAGGGTTTGATTCTGTCTTAGGTGATTGCTTCTGCAAGTCTCTATCTTCAAAGAACAAGTCATTATATATATTGTATCTGTTGTTAAATTTTTTTATTCGAAATAAACTGTGCAATAGTTATATATGCTGTTCTTTAACGACCTTATCATTTGATCGAGTTAAAATTCTAACCATTGATTATTTCTTTTTTGTTGGTTTAAAGATAAAATATCGTTCAAATGCTCTGCTAGTTCAAAAGGGAATTACATGCACATTCAAAGAAGGCATTAGAGTAGGAGTTATAGGAAGGACAGGAAGCAGAAAAACTACCCTCATAAGTGGACTTGACATCTGTTCAATGGGTCTAAAAGATTTGAGAATGAAGCTCAACATCATCCCTCAAAAGCCAACTCGTTTCAAAAGTAATATGGAGGGTGAGCTAACTGACTCCTGTTAA

Protein Analysis

369

Amino Acids

42.38

Weight (kDa)

9.48

Isoelectric Point (pI)

38.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000437)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G06105
fragaria_vesca FvH4_1g09709 FvH4_4g02101 FvH4_4g08975 FvH4_6g23372 FvH4_6g39851 FvH4_c1g00300
malus_domestica MD01G1176100.v1.1 MD09G1284900.v1.1 MD15G1306600.v1.1
prunus_persica Prupe.1G227700_v2.0.a1
pyrus_communis pycom01g00630 pycom01g01020 pycom01g01690 pycom01g01760 pycom01g04190 pycom01g04400 pycom02g18130 pycom03g10160 pycom05g06370 pycom05g08930 pycom06g05590 pycom10g06320 pycom11g14330 pycom11g15320 pycom11g16240 pycom12416g00050 pycom12420g00010 pycom12420g00120 pycom12426g00180 pycom12426g00710 pycom12531g00010 pycom1256g00020 pycom1256g00050 pycom1341g00030 pycom1353g00030 pycom13g23070 pycom13g23210 pycom13g26260 pycom13g26370 pycom13g26470 pycom13g26980 pycom14g08550 pycom14g08850 pycom1534g00040 pycom15g28760 pycom15g31230 pycom1604g00040 pycom16g21900 pycom16g26030 pycom1739g00020 pycom1739g00050 pycom17g12970 pycom17g17960 pycom17g18300 pycom17g18650 pycom2172g00020 pycom2438g00020 pycom436g00370 pycom436g00390 pycom576g00050 pycom76g00020
rosa_chinensis RchiOBHm_Chr1g0320811 RchiOBHm_Chr2g0135321 RchiOBHm_Chr3g0485721 RchiOBHm_Chr7g0236571
rosa_multiflora Rmu_sc0000185.1_g000007 Rmu_sc0002094.1_g000030 Rmu_sc0002764.1_g000007 Rmu_sc0002809.1_g000014 Rmu_sc0003005.1_g000007 Rmu_sc0003798.1_g000005 Rmu_sc0004646.1_g000027 Rmu_sc0004665.1_g000009 Rmu_sc0004818.1_g000001 Rmu_sc0004988.1_g000031 Rmu_sc0006373.1_g000007 Rmu_sc0007142.1_g000015 Rmu_sc0009930.1_g000001 Rmu_sc0011451.1_g000001 Rmu_sc0020424.1_g000001 Rmu_sc0036944.1_g000001 Rmu_ssc0000062.1_g000010
rosa_roxburghii Rroxscaffold_2G00123930 Rroxscaffold_3G00231480 Rroxscaffold_6G00413880
rosa_rugosa Rorug04G0084800
rosa_samantha Rh3BG150500 Rh6DG232400
rosa_wichuraiana Rw2G018400 Rw3G027860 Rw4G021220 Rw6G020670 Rw6G037970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 198
AciI CCGC 1 cut(s) 497
AclWI GGATC 1 cut(s) 329
AcsI RAATTY 3 cut(s) 166, 757, 834
AcuI CTGAAG 1 cut(s) 599
AfaI GTAC 2 cut(s) 84, 179
AfiI CCNNNNNNNGG 4 cut(s) 198, 407, 554, 558
AgsI TTSAA 8 cut(s) 470, 628, 720, 888, 905, 928, 1008, 1069
AluBI AGCT 4 cut(s) 20, 93, 1036, 1090
AluI AGCT 4 cut(s) 20, 93, 1036, 1090
Alw21I GWGCWC 1 cut(s) 570
Alw26I GTCTC 1 cut(s) 714
AlwI GGATC 1 cut(s) 329
AoxI GGCC 3 cut(s) 530, 545, 658
ApoI RAATTY 3 cut(s) 166, 757, 834
ArsI GACNNNNNNTTYG 2 cut(s) 713, 745
AspS9I GGNCC 2 cut(s) 651, 658
AsuC2I CCSGG 1 cut(s) 323
AsuHPI GGTGA 2 cut(s) 704, 1097
AsuII TTCGAA 1 cut(s) 769
AsuNHI GCTAGC 1 cut(s) 20
AvaII GGWCC 1 cut(s) 651
Bbv12I GWGCWC 1 cut(s) 570
BccI CCATC 1 cut(s) 426
BcnI CCSGG 1 cut(s) 323
BcoDI GTCTC 1 cut(s) 714
BfaI CTAG 3 cut(s) 21, 291, 899
BisI GCNGC 1 cut(s) 497
BlsI GCNGC 1 cut(s) 498
Bme1390I CCNGG 1 cut(s) 323
Bme18I GGWCC 1 cut(s) 651
BmgT120I GGNCC 2 cut(s) 651, 658
BmrFI CCNGG 1 cut(s) 323
BmsI GCATC 1 cut(s) 483
BmtI GCTAGC 1 cut(s) 24
Bpu10I CCTNAGC 1 cut(s) 16
Bpu14I TTCGAA 1 cut(s) 769
BpuMI CCSGG 1 cut(s) 323
Bsa29I ATCGAT 1 cut(s) 333
BsaJI CCNNGG 3 cut(s) 321, 552, 654
Bsc4I CCNNNNNNNGG 4 cut(s) 198, 407, 554, 558
BseCI ATCGAT 1 cut(s) 333
BseDI CCNNGG 3 cut(s) 321, 552, 654
BseGI GGATG 1 cut(s) 1044
BseLI CCNNNNNNNGG 4 cut(s) 198, 407, 554, 558
BsgI GTGCAG 1 cut(s) 347
BshFI GGCC 3 cut(s) 532, 547, 660
BshVI ATCGAT 1 cut(s) 333
BsiHKAI GWGCWC 1 cut(s) 570
BsiSI CCGG 1 cut(s) 323
BslFI GGGAC 3 cut(s) 424, 439, 627
BslI CCNNNNNNNGG 4 cut(s) 198, 407, 554, 558
BsmAI GTCTC 1 cut(s) 714
BsmFI GGGAC 3 cut(s) 424, 439, 627
BsnI GGCC 3 cut(s) 532, 547, 660
Bsp119I TTCGAA 1 cut(s) 769
Bsp1286I GDGCHC 1 cut(s) 570
Bsp1407I TGTACA 1 cut(s) 82
Bsp143I GATC 3 cut(s) 330, 334, 823
BspACI CCGC 1 cut(s) 497
BspANI GGCC 3 cut(s) 532, 547, 660
BspDI ATCGAT 1 cut(s) 333
BspHI TCATGA 1 cut(s) 486
BspOI GCTAGC 1 cut(s) 24
BspPI GGATC 1 cut(s) 329
BspT104I TTCGAA 1 cut(s) 769
BsrGI TGTACA 1 cut(s) 82
BssECI CCNNGG 3 cut(s) 321, 552, 654
BssMI GATC 3 cut(s) 330, 334, 823
BssT1I CCWWGG 2 cut(s) 552, 654
Bst4CI ACNGT 1 cut(s) 780
BstAUI TGTACA 1 cut(s) 82
BstBI TTCGAA 1 cut(s) 769
BstC8I GCNNGC 1 cut(s) 22
BstDEI CTNAG 3 cut(s) 16, 662, 688
BstF5I GGATG 1 cut(s) 1044
BstKTI GATC 3 cut(s) 333, 337, 826
BstMAI GTCTC 1 cut(s) 714
BstMBI GATC 3 cut(s) 330, 334, 823
BstMWI GCNNNNNNNGC 1 cut(s) 502
BstNSI RCATGY 1 cut(s) 921
BstSCI CCNGG 1 cut(s) 321
BstXI CCANNNNNNTGG 1 cut(s) 543
Bsu15I ATCGAT 1 cut(s) 333
BsuRI GGCC 3 cut(s) 532, 547, 660
BsuTUI ATCGAT 1 cut(s) 333
BtsCI GGATG 1 cut(s) 1044
Cac8I GCNNGC 1 cut(s) 22
CciI TCATGA 1 cut(s) 486
Cfr13I GGNCC 2 cut(s) 651, 658
ClaI ATCGAT 1 cut(s) 333
Csp6I GTAC 2 cut(s) 83, 178
CspCI CAANNNNNGTGG 2 cut(s) 498, 533
CviAII CATG 4 cut(s) 487, 543, 648, 918
CviQI GTAC 2 cut(s) 83, 178
DdeI CTNAG 3 cut(s) 16, 662, 688
DpnI GATC 3 cut(s) 332, 336, 825
DpnII GATC 3 cut(s) 330, 334, 823
DraI TTTAAA 2 cut(s) 264, 870
Eco130I CCWWGG 2 cut(s) 552, 654
Eco47I GGWCC 1 cut(s) 651
Eco57I CTGAAG 1 cut(s) 599
EcoT14I CCWWGG 2 cut(s) 552, 654
ErhI CCWWGG 2 cut(s) 552, 654
FaeI CATG 4 cut(s) 490, 546, 651, 921
FaqI GGGAC 3 cut(s) 424, 439, 627
FatI CATG 4 cut(s) 486, 542, 647, 917
Fnu4HI GCNGC 1 cut(s) 497
FokI GGATG 1 cut(s) 1031
Fsp4HI GCNGC 1 cut(s) 497
FspBI CTAG 3 cut(s) 21, 291, 899
GluI GCNGC 1 cut(s) 497
HaeIII GGCC 3 cut(s) 532, 547, 660
HapII CCGG 1 cut(s) 323
Hin1II CATG 4 cut(s) 490, 546, 651, 921
HinfI GANTC 8 cut(s) 139, 238, 287, 427, 615, 638, 680, 1097
HpaII CCGG 1 cut(s) 323
HphI GGTGA 2 cut(s) 704, 1097
Hpy166II GTNNAC 1 cut(s) 992
Hpy188I TCNGA 1 cut(s) 579
Hpy188III TCNNGA 1 cut(s) 487
Hpy8I GTNNAC 1 cut(s) 992
HpyAV CCTTC 5 cut(s) 35, 464, 574, 926, 951
HpyCH4III ACNGT 1 cut(s) 780
HpyCH4IV ACGT 1 cut(s) 311
HpyCH4V TGCA 4 cut(s) 328, 705, 783, 921
HpyF10VI GCNNNNNNNGC 1 cut(s) 502
HpyF3I CTNAG 3 cut(s) 16, 662, 688
HpySE526I ACGT 1 cut(s) 311
Hsp92II CATG 4 cut(s) 490, 546, 651, 921
Kzo9I GATC 3 cut(s) 330, 334, 823
LpnPI CCDG 4 cut(s) 205, 336, 513, 948
LweI GCATC 1 cut(s) 483
MaeI CTAG 3 cut(s) 21, 291, 899
MaeII ACGT 1 cut(s) 311
MalI GATC 3 cut(s) 332, 336, 825
MboI GATC 3 cut(s) 330, 334, 823
MboII GAAGA 1 cut(s) 708
MfeI CAATTG 1 cut(s) 465
MhlI GDGCHC 1 cut(s) 570
MlyI GAGTC 6 cut(s) 247, 296, 421, 609, 647, 1091
MmeI TCCRAC 2 cut(s) 533, 574
MnlI CCTC 9 cut(s) 365, 514, 516, 522, 604, 665, 992, 1059, 1075
MslI CAYNNNNRTG 2 cut(s) 491, 541
MspI CCGG 1 cut(s) 323
MspR9I CCNGG 1 cut(s) 323
MunI CAATTG 1 cut(s) 465
MwoI GCNNNNNNNGC 1 cut(s) 502
NciI CCSGG 1 cut(s) 323
NdeII GATC 3 cut(s) 330, 334, 823
NheI GCTAGC 1 cut(s) 20
NlaIII CATG 4 cut(s) 490, 546, 651, 921
NspI RCATGY 1 cut(s) 921
NspV TTCGAA 1 cut(s) 769
PagI TCATGA 1 cut(s) 486
PfeI GAWTC 2 cut(s) 139, 680
PflMI CCANNNNNTGG 1 cut(s) 198
PkrI GCNGC 1 cut(s) 498
PleI GAGTC 6 cut(s) 246, 295, 421, 609, 646, 1091
PpsI GAGTC 6 cut(s) 246, 295, 421, 609, 646, 1091
PspPI GGNCC 2 cut(s) 651, 658
RsaI GTAC 2 cut(s) 84, 179
RsaNI GTAC 2 cut(s) 83, 178
RseI CAYNNNNRTG 2 cut(s) 491, 541
SatI GCNGC 1 cut(s) 497
Sau3AI GATC 3 cut(s) 330, 334, 823
Sau96I GGNCC 2 cut(s) 651, 658
SchI GAGTC 6 cut(s) 247, 296, 421, 609, 647, 1091
ScrFI CCNGG 1 cut(s) 323
SduI GDGCHC 1 cut(s) 570
SetI ASST 9 cut(s) 22, 95, 314, 585, 656, 694, 815, 1038, 1092
SfaNI GCATC 1 cut(s) 483
SfuI TTCGAA 1 cut(s) 769
SinI GGWCC 1 cut(s) 651
SmiMI CAYNNNNRTG 2 cut(s) 491, 541
SsiI CCGC 1 cut(s) 497
SspMI CTAG 3 cut(s) 21, 291, 899
StyD4I CCNGG 1 cut(s) 321
StyI CCWWGG 2 cut(s) 552, 654
TaaI ACNGT 1 cut(s) 780
TaiI ACGT 1 cut(s) 314
TaqI TCGA 5 cut(s) 333, 430, 449, 769, 826
TatI WGTACW 2 cut(s) 82, 177
TauI GCSGC 1 cut(s) 499
TfiI GAWTC 2 cut(s) 139, 680
TspDTI ATGAA 7 cut(s) 17, 23, 26, 131, 475, 531, 1046
Van91I CCANNNNNTGG 1 cut(s) 198
VpaK11BI GGWCC 1 cut(s) 651
XapI RAATTY 3 cut(s) 166, 757, 834
XceI RCATGY 1 cut(s) 921
XcmI CCANNNNNNNNNTGG 1 cut(s) 540
XspI CTAG 3 cut(s) 21, 291, 899
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.