pycom1604g00040

protein kinase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00001604
OG0000437
Physical Location & Seq
Reverse (-)
71367 .. 71729
363 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom1604g00040.1

Sequence Viewer

Length: 363 bp
ATGAAGGCCTTTCCATTCTCCCTTGTGGACAAGGCCAAAGATTGGTTGTATGAATTGGCCCCCGGAACTGTCAATTCTTGGGAAAGTATGAAACGTGCATTCTTAGAGAAATTCTTTCCCACTGCAAAGATCATTCTCTTGAGGAAACGAATTAGTGGCATCCAACAAAATCAAGGTGAGTCGTTTCCATCTTATTATGAACGTTTTAAATCACTTGTTGCTTCATGTCCACAACATCAAATGAAGGAGGAGCTGCTCATTCAATATTTCTACGAGGGACTCCTTCCTATGGAACGTCAAATGCTAGATGCCTCGGCGGGGGGTGCATTAGTGGACAAGACTCCGGTGGATTCCAAAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 RVT_1 Retrotrans_gag rve

Protein Analysis

121

Amino Acids

13.8

Weight (kDa)

8.66

Isoelectric Point (pI)

40.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotrans_gag PF03732 2 - 95 8.5e-22 Retrotransposon gag protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000437)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G06105
fragaria_vesca FvH4_1g09709 FvH4_4g02101 FvH4_4g08975 FvH4_6g23372 FvH4_6g39851 FvH4_c1g00300
malus_domestica MD01G1176100.v1.1 MD09G1284900.v1.1 MD15G1306600.v1.1
prunus_persica Prupe.1G227700_v2.0.a1
pyrus_communis pycom01g00630 pycom01g01020 pycom01g01690 pycom01g01760 pycom01g04190 pycom01g04400 pycom02g18130 pycom03g10160 pycom05g06370 pycom05g08930 pycom06g05590 pycom10g06320 pycom11g14330 pycom11g15320 pycom11g16240 pycom12416g00050 pycom12420g00010 pycom12420g00120 pycom12426g00180 pycom12426g00710 pycom12531g00010 pycom1256g00020 pycom1256g00050 pycom1341g00030 pycom1353g00030 pycom13g23070 pycom13g23210 pycom13g26260 pycom13g26370 pycom13g26470 pycom13g26980 pycom14g08550 pycom14g08850 pycom1534g00040 pycom15g28760 pycom15g31230 pycom1604g00040 pycom16g21900 pycom16g26030 pycom1739g00020 pycom1739g00050 pycom17g12970 pycom17g17960 pycom17g18300 pycom17g18650 pycom2172g00020 pycom2438g00020 pycom436g00370 pycom436g00390 pycom576g00050 pycom76g00020
rosa_chinensis RchiOBHm_Chr1g0320811 RchiOBHm_Chr2g0135321 RchiOBHm_Chr3g0485721 RchiOBHm_Chr7g0236571
rosa_multiflora Rmu_sc0000185.1_g000007 Rmu_sc0002094.1_g000030 Rmu_sc0002764.1_g000007 Rmu_sc0002809.1_g000014 Rmu_sc0003005.1_g000007 Rmu_sc0003798.1_g000005 Rmu_sc0004646.1_g000027 Rmu_sc0004665.1_g000009 Rmu_sc0004818.1_g000001 Rmu_sc0004988.1_g000031 Rmu_sc0006373.1_g000007 Rmu_sc0007142.1_g000015 Rmu_sc0009930.1_g000001 Rmu_sc0011451.1_g000001 Rmu_sc0020424.1_g000001 Rmu_sc0036944.1_g000001 Rmu_ssc0000062.1_g000010
rosa_roxburghii Rroxscaffold_2G00123930 Rroxscaffold_3G00231480 Rroxscaffold_6G00413880
rosa_rugosa Rorug04G0084800
rosa_samantha Rh3BG150500 Rh6DG232400
rosa_wichuraiana Rw2G018400 Rw3G027860 Rw4G021220 Rw6G020670 Rw6G037970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 42
AciI CCGC 1 cut(s) 317
AclI AACGTT 1 cut(s) 202
AcsI RAATTY 1 cut(s) 110
AfiI CCNNNNNNNGG 3 cut(s) 42, 289, 318
AgsI TTSAA 1 cut(s) 263
AluBI AGCT 1 cut(s) 253
AluI AGCT 1 cut(s) 253
AoxI GGCC 3 cut(s) 6, 33, 57
ApeKI GCWGC 1 cut(s) 253
ApoI RAATTY 1 cut(s) 110
AspS9I GGNCC 1 cut(s) 58
AsuC2I CCSGG 1 cut(s) 63
AsuHPI GGTGA 1 cut(s) 188
BbvI GCAGC 1 cut(s) 240
BccI CCATC 1 cut(s) 196
BcnI CCSGG 1 cut(s) 63
BfaI CTAG 1 cut(s) 305
BisI GCNGC 1 cut(s) 254
BlsI GCNGC 1 cut(s) 255
Bme1390I CCNGG 1 cut(s) 63
BmgT120I GGNCC 1 cut(s) 58
BmiI GGNNCC 1 cut(s) 60
BmrFI CCNGG 1 cut(s) 63
BmsI GCATC 2 cut(s) 168, 298
BpuEI CTTGAG 1 cut(s) 160
BpuMI CCSGG 1 cut(s) 63
BsaJI CCNNGG 2 cut(s) 61, 312
BsaWI WCCGGW 1 cut(s) 343
Bsc4I CCNNNNNNNGG 3 cut(s) 42, 289, 318
BseDI CCNNGG 2 cut(s) 61, 312
BseGI GGATG 1 cut(s) 159
BseLI CCNNNNNNNGG 3 cut(s) 42, 289, 318
BseRI GAGGAG 1 cut(s) 263
BseXI GCAGC 1 cut(s) 240
BshFI GGCC 3 cut(s) 8, 35, 59
BsiSI CCGG 2 cut(s) 63, 344
BslFI GGGAC 1 cut(s) 291
BslI CCNNNNNNNGG 3 cut(s) 42, 289, 318
BsmFI GGGAC 1 cut(s) 291
BsmI GAATGC 1 cut(s) 98
BsnI GGCC 3 cut(s) 8, 35, 59
Bsp143I GATC 1 cut(s) 129
BspACI CCGC 1 cut(s) 317
BspANI GGCC 3 cut(s) 8, 35, 59
BspLI GGNNCC 1 cut(s) 60
BssECI CCNNGG 2 cut(s) 61, 312
BssMI GATC 1 cut(s) 129
Bst4CI ACNGT 1 cut(s) 70
BstDEI CTNAG 1 cut(s) 103
BstF5I GGATG 1 cut(s) 159
BstKTI GATC 1 cut(s) 132
BstMBI GATC 1 cut(s) 129
BstMWI GCNNNNNNNGC 1 cut(s) 323
BstSCI CCNGG 1 cut(s) 61
BstV1I GCAGC 1 cut(s) 240
BsuRI GGCC 3 cut(s) 8, 35, 59
BtsCI GGATG 1 cut(s) 159
BtsI GCAGTG 1 cut(s) 120
BtsIMutI CAGTG 1 cut(s) 120
Cfr13I GGNCC 1 cut(s) 58
CviAII CATG 1 cut(s) 225
CviJI RGCY 4 cut(s) 8, 35, 59, 253
CviKI_1 RGCY 4 cut(s) 8, 35, 59, 253
DdeI CTNAG 1 cut(s) 103
DpnI GATC 1 cut(s) 131
DpnII GATC 1 cut(s) 129
DraI TTTAAA 1 cut(s) 208
Eco147I AGGCCT 1 cut(s) 8
FaeI CATG 1 cut(s) 228
FaiI YATR 5 cut(s) 51, 89, 198, 226, 290
FaqI GGGAC 1 cut(s) 291
FatI CATG 1 cut(s) 224
FauI CCCGC 1 cut(s) 310
Fnu4HI GCNGC 1 cut(s) 254
FokI GGATG 1 cut(s) 146
Fsp4HI GCNGC 1 cut(s) 254
FspBI CTAG 1 cut(s) 305
GluI GCNGC 1 cut(s) 254
HaeIII GGCC 3 cut(s) 8, 35, 59
HapII CCGG 2 cut(s) 63, 344
Hin1II CATG 1 cut(s) 228
HinfI GANTC 4 cut(s) 179, 279, 340, 350
HpaII CCGG 2 cut(s) 63, 344
HphI GGTGA 1 cut(s) 188
Hpy166II GTNNAC 3 cut(s) 28, 230, 334
Hpy188III TCNNGA 1 cut(s) 139
Hpy8I GTNNAC 3 cut(s) 28, 230, 334
HpyAV CCTTC 2 cut(s) 238, 293
HpyCH4III ACNGT 1 cut(s) 70
HpyCH4IV ACGT 3 cut(s) 94, 202, 295
HpyCH4V TGCA 3 cut(s) 98, 125, 326
HpyF10VI GCNNNNNNNGC 1 cut(s) 323
HpyF3I CTNAG 1 cut(s) 103
HpySE526I ACGT 3 cut(s) 94, 202, 295
Hsp92II CATG 1 cut(s) 228
Kzo9I GATC 1 cut(s) 129
LmnI GCTCC 1 cut(s) 250
LpnPI CCDG 2 cut(s) 76, 357
Lsp1109I GCAGC 1 cut(s) 240
LweI GCATC 2 cut(s) 168, 298
MaeI CTAG 1 cut(s) 305
MaeII ACGT 3 cut(s) 94, 202, 295
MalI GATC 1 cut(s) 131
MboI GATC 1 cut(s) 129
MluCI AATT 4 cut(s) 53, 73, 110, 150
MlyI GAGTC 3 cut(s) 188, 273, 334
MmeI TCCRAC 1 cut(s) 187
MnlI CCTC 4 cut(s) 135, 241, 268, 322
MseI TTAA 1 cut(s) 207
MspI CCGG 2 cut(s) 63, 344
MspR9I CCNGG 1 cut(s) 63
Mva1269I GAATGC 1 cut(s) 98
MwoI GCNNNNNNNGC 1 cut(s) 323
NciI CCSGG 1 cut(s) 63
NdeII GATC 1 cut(s) 129
NlaIII CATG 1 cut(s) 228
NlaIV GGNNCC 1 cut(s) 60
NmeAIII GCCGAG 1 cut(s) 293
PceI AGGCCT 1 cut(s) 8
PctI GAATGC 1 cut(s) 98
PfeI GAWTC 1 cut(s) 350
PflMI CCANNNNNTGG 1 cut(s) 42
PkrI GCNGC 1 cut(s) 255
PleI GAGTC 3 cut(s) 187, 273, 334
PpsI GAGTC 3 cut(s) 187, 273, 334
Psp1406I AACGTT 1 cut(s) 202
PspN4I GGNNCC 1 cut(s) 60
PspPI GGNCC 1 cut(s) 58
SaqAI TTAA 1 cut(s) 207
SatI GCNGC 1 cut(s) 254
Sau3AI GATC 1 cut(s) 129
Sau96I GGNCC 1 cut(s) 58
SchI GAGTC 3 cut(s) 188, 273, 334
ScrFI CCNGG 1 cut(s) 63
SetI ASST 5 cut(s) 97, 178, 205, 255, 298
SfaNI GCATC 2 cut(s) 168, 298
SmlI CTYRAG 1 cut(s) 139
SmoI CTYRAG 1 cut(s) 139
Sse9I AATT 4 cut(s) 53, 73, 110, 150
SseBI AGGCCT 1 cut(s) 8
SsiI CCGC 1 cut(s) 317
SspI AATATT 1 cut(s) 266
SspMI CTAG 1 cut(s) 305
StuI AGGCCT 1 cut(s) 8
StyD4I CCNGG 1 cut(s) 61
TaaI ACNGT 1 cut(s) 70
TaiI ACGT 3 cut(s) 97, 205, 298
TasI AATT 4 cut(s) 53, 73, 110, 150
TfiI GAWTC 1 cut(s) 350
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TscAI CASTG 1 cut(s) 127
TseI GCWGC 1 cut(s) 253
TspDTI ATGAA 6 cut(s) 17, 66, 104, 213, 213, 257
TspRI CASTG 1 cut(s) 127
Van91I CCANNNNNTGG 1 cut(s) 42
XapI RAATTY 1 cut(s) 110
XspI CTAG 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.