pycom2172g00020

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00002172
OG0000437
Physical Location & Seq
Reverse (-)
2074 .. 2568
495 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom2172g00020.1

Sequence Viewer

Length: 495 bp
ATGACGCGGAGTTCTCAAACTGTGCATGCACATATCTTGGACTTTAACGACGATTTTGAACGTGATTTGAGAAGAAAGAGGAGGCATCCCGAACCTAGTGAACCTAGTTCAAGTTCAGAGGCCGAATCTGAGTTTGAAAGTGTGGAAGAAGAAGTTATGGCAGCGGACAATCGGACCATTAAAGAGCTTTCGGCCTCGGGGTTGACCAATGCCGCACCATTATGCATTCAATACCCCGCGGCTGCCCAAGGCAAGACCGATGAATTCGAGTTGAAGTCAAGCTTGTTGCACCACATTCCGAAATACCATGGGCTTTCCATGGAAGATCCCAACAAGCATCTCAAGGAGTTCGAGGTTGTTTGTTCGAGCATGACACCCATAAATGTCGATGGGAACATTCTAATGATGAAAGCTTTCCATTCTCTCTTGTGGAAAAGGCTAAGGATTGGCTTTATGAATTGGCACCCGGGACCGTTACTTCTTGGGAGAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotrans_gag

Protein Analysis

165

Amino Acids

18.61

Weight (kDa)

5.97

Isoelectric Point (pI)

62.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000437)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G06105
fragaria_vesca FvH4_1g09709 FvH4_4g02101 FvH4_4g08975 FvH4_6g23372 FvH4_6g39851 FvH4_c1g00300
malus_domestica MD01G1176100.v1.1 MD09G1284900.v1.1 MD15G1306600.v1.1
prunus_persica Prupe.1G227700_v2.0.a1
pyrus_communis pycom01g00630 pycom01g01020 pycom01g01690 pycom01g01760 pycom01g04190 pycom01g04400 pycom02g18130 pycom03g10160 pycom05g06370 pycom05g08930 pycom06g05590 pycom10g06320 pycom11g14330 pycom11g15320 pycom11g16240 pycom12416g00050 pycom12420g00010 pycom12420g00120 pycom12426g00180 pycom12426g00710 pycom12531g00010 pycom1256g00020 pycom1256g00050 pycom1341g00030 pycom1353g00030 pycom13g23070 pycom13g23210 pycom13g26260 pycom13g26370 pycom13g26470 pycom13g26980 pycom14g08550 pycom14g08850 pycom1534g00040 pycom15g28760 pycom15g31230 pycom1604g00040 pycom16g21900 pycom16g26030 pycom1739g00020 pycom1739g00050 pycom17g12970 pycom17g17960 pycom17g18300 pycom17g18650 pycom2172g00020 pycom2438g00020 pycom436g00370 pycom436g00390 pycom576g00050 pycom76g00020
rosa_chinensis RchiOBHm_Chr1g0320811 RchiOBHm_Chr2g0135321 RchiOBHm_Chr3g0485721 RchiOBHm_Chr7g0236571
rosa_multiflora Rmu_sc0000185.1_g000007 Rmu_sc0002094.1_g000030 Rmu_sc0002764.1_g000007 Rmu_sc0002809.1_g000014 Rmu_sc0003005.1_g000007 Rmu_sc0003798.1_g000005 Rmu_sc0004646.1_g000027 Rmu_sc0004665.1_g000009 Rmu_sc0004818.1_g000001 Rmu_sc0004988.1_g000031 Rmu_sc0006373.1_g000007 Rmu_sc0007142.1_g000015 Rmu_sc0009930.1_g000001 Rmu_sc0011451.1_g000001 Rmu_sc0020424.1_g000001 Rmu_sc0036944.1_g000001 Rmu_ssc0000062.1_g000010
rosa_roxburghii Rroxscaffold_2G00123930 Rroxscaffold_3G00231480 Rroxscaffold_6G00413880
rosa_rugosa Rorug04G0084800
rosa_samantha Rh3BG150500 Rh6DG232400
rosa_wichuraiana Rw2G018400 Rw3G027860 Rw4G021220 Rw6G020670 Rw6G037970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 462
AccII CGCG 2 cut(s) 7, 239
AciI CCGC 5 cut(s) 7, 164, 213, 237, 239
AclWI GGATC 1 cut(s) 320
AcsI RAATTY 1 cut(s) 263
AgsI TTSAA 5 cut(s) 59, 111, 137, 230, 274
AluBI AGCT 3 cut(s) 187, 282, 413
AluI AGCT 3 cut(s) 187, 282, 413
AlwI GGATC 1 cut(s) 320
Ama87I CYCGRG 2 cut(s) 196, 466
AoxI GGCC 2 cut(s) 120, 192
ApeKI GCWGC 2 cut(s) 161, 242
ApoI RAATTY 1 cut(s) 263
Asp700I GAANNNNTTC 1 cut(s) 413
AspS9I GGNCC 2 cut(s) 174, 470
AsuC2I CCSGG 2 cut(s) 467, 468
AvaI CYCGRG 2 cut(s) 196, 466
AvaII GGWCC 2 cut(s) 174, 470
BanI GGYRCC 1 cut(s) 462
BbvI GCAGC 2 cut(s) 173, 229
BccI CCATC 1 cut(s) 383
BcnI CCSGG 2 cut(s) 467, 468
BfaI CTAG 2 cut(s) 96, 105
BisI GCNGC 4 cut(s) 162, 213, 240, 243
BlsI GCNGC 4 cut(s) 163, 214, 241, 244
Bme1390I CCNGG 2 cut(s) 467, 468
Bme18I GGWCC 2 cut(s) 174, 470
BmeT110I CYCGRG 2 cut(s) 196, 466
BmgT120I GGNCC 2 cut(s) 174, 470
BmiI GGNNCC 2 cut(s) 464, 471
BmrFI CCNGG 2 cut(s) 467, 468
BmsI GCATC 2 cut(s) 94, 346
Bpu10I CCTNAGC 1 cut(s) 440
BpuEI CTTGAG 1 cut(s) 326
BpuMI CCSGG 2 cut(s) 467, 468
BsaJI CCNNGG 6 cut(s) 195, 237, 247, 307, 318, 466
BseDI CCNNGG 6 cut(s) 195, 237, 247, 307, 318, 466
BseGI GGATG 1 cut(s) 85
BseMII CTCAG 1 cut(s) 120
BseRI GAGGAG 1 cut(s) 94
BseXI GCAGC 2 cut(s) 173, 229
Bsh1236I CGCG 2 cut(s) 7, 239
BshFI GGCC 2 cut(s) 122, 194
BshNI GGYRCC 1 cut(s) 462
BsiHKCI CYCGRG 2 cut(s) 196, 466
BsiSI CCGG 1 cut(s) 467
BslFI GGGAC 1 cut(s) 483
BsmFI GGGAC 1 cut(s) 483
BsmI GAATGC 1 cut(s) 225
BsnI GGCC 2 cut(s) 122, 194
BsoBI CYCGRG 2 cut(s) 196, 466
Bsp143I GATC 1 cut(s) 325
Bsp19I CCATGG 2 cut(s) 307, 318
BspACI CCGC 5 cut(s) 7, 164, 213, 237, 239
BspANI GGCC 2 cut(s) 122, 194
BspCNI CTCAG 1 cut(s) 121
BspFNI CGCG 2 cut(s) 7, 239
BspLI GGNNCC 2 cut(s) 464, 471
BspPI GGATC 1 cut(s) 320
BspT107I GGYRCC 1 cut(s) 462
BssECI CCNNGG 6 cut(s) 195, 237, 247, 307, 318, 466
BssMI GATC 1 cut(s) 325
BssT1I CCWWGG 3 cut(s) 247, 307, 318
Bst4CI ACNGT 2 cut(s) 22, 474
BstC8I GCNNGC 1 cut(s) 27
BstDEI CTNAG 2 cut(s) 129, 440
BstDSI CCRYGG 3 cut(s) 237, 307, 318
BstF5I GGATG 1 cut(s) 85
BstFNI CGCG 2 cut(s) 7, 239
BstKTI GATC 1 cut(s) 328
BstMBI GATC 1 cut(s) 325
BstNSI RCATGY 1 cut(s) 29
BstSCI CCNGG 2 cut(s) 465, 466
BstUI CGCG 2 cut(s) 7, 239
BstV1I GCAGC 2 cut(s) 173, 229
BstX2I RGATCY 1 cut(s) 325
BstYI RGATCY 1 cut(s) 325
BsuRI GGCC 2 cut(s) 122, 194
BtgI CCRYGG 3 cut(s) 237, 307, 318
BtsCI GGATG 1 cut(s) 85
Cac8I GCNNGC 1 cut(s) 27
Cfr13I GGNCC 2 cut(s) 174, 470
Cfr42I CCGCGG 1 cut(s) 240
Cfr9I CCCGGG 1 cut(s) 466
CseI GACGC 1 cut(s) 13
CviAII CATG 5 cut(s) 26, 308, 319, 370, 492
CviJI RGCY 9 cut(s) 122, 187, 194, 242, 282, 313, 413, 439, 450
CviKI_1 RGCY 9 cut(s) 122, 187, 194, 242, 282, 313, 413, 439, 450
DdeI CTNAG 2 cut(s) 129, 440
DpnI GATC 1 cut(s) 327
DpnII GATC 1 cut(s) 325
Eco130I CCWWGG 3 cut(s) 247, 307, 318
Eco47I GGWCC 2 cut(s) 174, 470
Eco88I CYCGRG 2 cut(s) 196, 466
EcoRI GAATTC 1 cut(s) 263
EcoT14I CCWWGG 3 cut(s) 247, 307, 318
EcoT22I ATGCAT 1 cut(s) 227
ErhI CCWWGG 3 cut(s) 247, 307, 318
FaeI CATG 5 cut(s) 29, 311, 322, 373, 495
FalI AAGNNNNNCTT 2 cut(s) 266, 298
FaqI GGGAC 1 cut(s) 483
FatI CATG 5 cut(s) 25, 307, 318, 369, 491
FauI CCCGC 1 cut(s) 244
Fnu4HI GCNGC 4 cut(s) 162, 213, 240, 243
FokI GGATG 1 cut(s) 72
Fsp4HI GCNGC 4 cut(s) 162, 213, 240, 243
FspBI CTAG 2 cut(s) 96, 105
GluI GCNGC 4 cut(s) 162, 213, 240, 243
HaeIII GGCC 2 cut(s) 122, 194
HapII CCGG 1 cut(s) 467
HgaI GACGC 1 cut(s) 13
Hin1II CATG 5 cut(s) 29, 311, 322, 373, 495
HincII GTYRAC 1 cut(s) 204
HindII GTYRAC 1 cut(s) 204
HindIII AAGCTT 2 cut(s) 280, 411
HinfI GANTC 1 cut(s) 125
HpaII CCGG 1 cut(s) 467
Hpy166II GTNNAC 2 cut(s) 101, 204
Hpy188I TCNGA 4 cut(s) 118, 130, 174, 300
Hpy188III TCNNGA 1 cut(s) 89
Hpy8I GTNNAC 2 cut(s) 101, 204
Hpy99I CGWCG 1 cut(s) 53
HpyCH4III ACNGT 2 cut(s) 22, 474
HpyCH4IV ACGT 1 cut(s) 61
HpyCH4V TGCA 4 cut(s) 25, 29, 225, 289
HpyF3I CTNAG 2 cut(s) 129, 440
HpySE526I ACGT 1 cut(s) 61
Hsp92II CATG 5 cut(s) 29, 311, 322, 373, 495
KspI CCGCGG 1 cut(s) 240
Kzo9I GATC 1 cut(s) 325
LpnPI CCDG 1 cut(s) 480
Lsp1109I GCAGC 2 cut(s) 173, 229
LweI GCATC 2 cut(s) 94, 346
MaeI CTAG 2 cut(s) 96, 105
MaeII ACGT 1 cut(s) 61
MaeIII GTNAC 1 cut(s) 474
MalI GATC 1 cut(s) 327
MboI GATC 1 cut(s) 325
MboII GAAGA 4 cut(s) 84, 158, 161, 335
MflI RGATCY 1 cut(s) 325
MluCI AATT 2 cut(s) 263, 457
MnlI CCTC 5 cut(s) 72, 75, 112, 205, 346
Mph1103I ATGCAT 1 cut(s) 227
MroXI GAANNNNTTC 1 cut(s) 413
MseI TTAA 2 cut(s) 45, 180
MslI CAYNNNNRTG 2 cut(s) 220, 401
MspA1I CMGCKG 2 cut(s) 164, 239
MspI CCGG 1 cut(s) 467
MspR9I CCNGG 2 cut(s) 467, 468
Mva1269I GAATGC 1 cut(s) 225
MvnI CGCG 2 cut(s) 7, 239
NciI CCSGG 2 cut(s) 467, 468
NcoI CCATGG 2 cut(s) 307, 318
NdeII GATC 1 cut(s) 325
NlaIII CATG 5 cut(s) 29, 311, 322, 373, 495
NlaIV GGNNCC 2 cut(s) 464, 471
NsiI ATGCAT 1 cut(s) 227
NspI RCATGY 1 cut(s) 29
PaeI GCATGC 1 cut(s) 29
PctI GAATGC 1 cut(s) 225
PdmI GAANNNNTTC 1 cut(s) 413
PfeI GAWTC 1 cut(s) 125
PkrI GCNGC 4 cut(s) 163, 214, 241, 244
PspN4I GGNNCC 2 cut(s) 464, 471
PspPI GGNCC 2 cut(s) 174, 470
PsuI RGATCY 1 cut(s) 325
RseI CAYNNNNRTG 2 cut(s) 220, 401
SacII CCGCGG 1 cut(s) 240
SaqAI TTAA 2 cut(s) 45, 180
SatI GCNGC 4 cut(s) 162, 213, 240, 243
Sau3AI GATC 1 cut(s) 325
Sau96I GGNCC 2 cut(s) 174, 470
ScrFI CCNGG 2 cut(s) 467, 468
SetI ASST 7 cut(s) 64, 97, 106, 189, 284, 357, 415
SfaNI GCATC 2 cut(s) 94, 346
Sfr303I CCGCGG 1 cut(s) 240
SgrBI CCGCGG 1 cut(s) 240
SinI GGWCC 2 cut(s) 174, 470
SmaI CCCGGG 1 cut(s) 468
SmiMI CAYNNNNRTG 2 cut(s) 220, 401
SmlI CTYRAG 1 cut(s) 341
SmoI CTYRAG 1 cut(s) 341
SphI GCATGC 1 cut(s) 29
Sse9I AATT 2 cut(s) 263, 457
SsiI CCGC 5 cut(s) 7, 164, 213, 237, 239
SspMI CTAG 2 cut(s) 96, 105
StyD4I CCNGG 2 cut(s) 465, 466
StyI CCWWGG 3 cut(s) 247, 307, 318
TaaI ACNGT 2 cut(s) 22, 474
TaiI ACGT 1 cut(s) 64
TaqI TCGA 4 cut(s) 267, 351, 365, 387
TaqII GACCGA 1 cut(s) 272
TasI AATT 2 cut(s) 263, 457
TauI GCSGC 2 cut(s) 215, 242
TfiI GAWTC 1 cut(s) 125
Tru1I TTAA 2 cut(s) 45, 180
Tru9I TTAA 2 cut(s) 45, 180
TseI GCWGC 2 cut(s) 161, 242
TspDTI ATGAA 3 cut(s) 276, 422, 470
TspMI CCCGGG 1 cut(s) 466
VpaK11BI GGWCC 2 cut(s) 174, 470
XapI RAATTY 1 cut(s) 263
XceI RCATGY 1 cut(s) 29
XmaI CCCGGG 1 cut(s) 466
XmnI GAANNNNTTC 1 cut(s) 413
XspI CTAG 2 cut(s) 96, 105
Zsp2I ATGCAT 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.