pycom13g26980

AAA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0000437
Physical Location & Seq
Forward (+)
23423423 .. 23423956
534 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g26980.3

Sequence Viewer

Length: 447 bp
ATGCTAGCAACTTTGCTAATCCTTTGTCTTTATTTTTATATTTTTTTTTTTTTGTTTTTCGTGCATTCTTATTTCAGATTCTTAGTTTGTTTGTTTCCTTGTTTTTTTAGCTCCGACTTTGACGGTGATTTTGAACGCACTTTGAGGAGAACGAGGAGTCAACAAGAGCCACCACAACCTCCACCACAACCTGGGCTTGAAGAAGACGAAGTAGGTGTAGAAGAAAAGCCCACGGATCAGATTTTTGAAGAAGAACAAGCCATGGCAGTAGATAATAGAACCATCAAGGAGCTTTCGGCCTCGGGTTTGGCCAATGCAGACCCTCTTTGCATTCAATACCCGCGGCTGCCCAAGGCAAGACCGATGAATTTGAACTCAAATCCAGTTTGTTACACCATATTCCGAAGTTCCATGGCTTGTCTATGGAAGACCCCAACAAACACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12 Cytochrom_B561

Protein Analysis

149

Amino Acids

17.17

Weight (kDa)

4.86

Isoelectric Point (pI)

61.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000437)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G06105
fragaria_vesca FvH4_1g09709 FvH4_4g02101 FvH4_4g08975 FvH4_6g23372 FvH4_6g39851 FvH4_c1g00300
malus_domestica MD01G1176100.v1.1 MD09G1284900.v1.1 MD15G1306600.v1.1
prunus_persica Prupe.1G227700_v2.0.a1
pyrus_communis pycom01g00630 pycom01g01020 pycom01g01690 pycom01g01760 pycom01g04190 pycom01g04400 pycom02g18130 pycom03g10160 pycom05g06370 pycom05g08930 pycom06g05590 pycom10g06320 pycom11g14330 pycom11g15320 pycom11g16240 pycom12416g00050 pycom12420g00010 pycom12420g00120 pycom12426g00180 pycom12426g00710 pycom12531g00010 pycom1256g00020 pycom1256g00050 pycom1341g00030 pycom1353g00030 pycom13g23070 pycom13g23210 pycom13g26260 pycom13g26370 pycom13g26470 pycom13g26980 pycom14g08550 pycom14g08850 pycom1534g00040 pycom15g28760 pycom15g31230 pycom1604g00040 pycom16g21900 pycom16g26030 pycom1739g00020 pycom1739g00050 pycom17g12970 pycom17g17960 pycom17g18300 pycom17g18650 pycom2172g00020 pycom2438g00020 pycom436g00370 pycom436g00390 pycom576g00050 pycom76g00020
rosa_chinensis RchiOBHm_Chr1g0320811 RchiOBHm_Chr2g0135321 RchiOBHm_Chr3g0485721 RchiOBHm_Chr7g0236571
rosa_multiflora Rmu_sc0000185.1_g000007 Rmu_sc0002094.1_g000030 Rmu_sc0002764.1_g000007 Rmu_sc0002809.1_g000014 Rmu_sc0003005.1_g000007 Rmu_sc0003798.1_g000005 Rmu_sc0004646.1_g000027 Rmu_sc0004665.1_g000009 Rmu_sc0004818.1_g000001 Rmu_sc0004988.1_g000031 Rmu_sc0006373.1_g000007 Rmu_sc0007142.1_g000015 Rmu_sc0009930.1_g000001 Rmu_sc0011451.1_g000001 Rmu_sc0020424.1_g000001 Rmu_sc0036944.1_g000001 Rmu_ssc0000062.1_g000010
rosa_roxburghii Rroxscaffold_2G00123930 Rroxscaffold_3G00231480 Rroxscaffold_6G00413880
rosa_rugosa Rorug04G0084800
rosa_samantha Rh3BG150500 Rh6DG232400
rosa_wichuraiana Rw2G018400 Rw3G027860 Rw4G021220 Rw6G020670 Rw6G037970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 191
AccII CGCG 1 cut(s) 343
AciI CCGC 2 cut(s) 341, 343
AclWI GGATC 1 cut(s) 243
AcoI YGGCCR 1 cut(s) 309
AcsI RAATTY 1 cut(s) 367
AfiI CCNNNNNNNGG 1 cut(s) 191
AgsI TTSAA 5 cut(s) 134, 200, 248, 335, 373
AjnI CCWGG 1 cut(s) 190
AluBI AGCT 2 cut(s) 111, 292
AluI AGCT 2 cut(s) 111, 292
AlwI GGATC 1 cut(s) 243
Ama87I CYCGRG 1 cut(s) 301
AoxI GGCC 2 cut(s) 297, 309
ApeKI GCWGC 1 cut(s) 346
ApoI RAATTY 1 cut(s) 367
ArsI GACNNNNNNTTYG 2 cut(s) 113, 145
AsuHPI GGTGA 1 cut(s) 137
AsuNHI GCTAGC 1 cut(s) 4
AvaI CYCGRG 1 cut(s) 301
BalI TGGCCA 1 cut(s) 311
BbsI GAAGAC 2 cut(s) 210, 434
BbvI GCAGC 1 cut(s) 333
BccI CCATC 1 cut(s) 290
BciT130I CCWGG 1 cut(s) 192
BfaI CTAG 1 cut(s) 5
BisI GCNGC 2 cut(s) 344, 347
BlsI GCNGC 2 cut(s) 345, 348
Bme1390I CCNGG 1 cut(s) 192
BmeT110I CYCGRG 1 cut(s) 301
BmrFI CCNGG 1 cut(s) 192
BmtI GCTAGC 1 cut(s) 8
BpiI GAAGAC 2 cut(s) 210, 434
BsaJI CCNNGG 7 cut(s) 191, 231, 261, 300, 341, 351, 411
Bsc4I CCNNNNNNNGG 1 cut(s) 191
Bse1I ACTGG 1 cut(s) 383
BseBI CCWGG 1 cut(s) 192
BseDI CCNNGG 7 cut(s) 191, 231, 261, 300, 341, 351, 411
BseLI CCNNNNNNNGG 1 cut(s) 191
BseNI ACTGG 1 cut(s) 383
BseRI GAGGAG 2 cut(s) 160, 169
BseXI GCAGC 1 cut(s) 333
Bsh1236I CGCG 1 cut(s) 343
BshFI GGCC 2 cut(s) 299, 311
BsiHKCI CYCGRG 1 cut(s) 301
BslI CCNNNNNNNGG 1 cut(s) 191
BsmI GAATGC 2 cut(s) 64, 330
BsnI GGCC 2 cut(s) 299, 311
BsoBI CYCGRG 1 cut(s) 301
Bsp143I GATC 1 cut(s) 235
Bsp19I CCATGG 2 cut(s) 261, 411
BspACI CCGC 2 cut(s) 341, 343
BspANI GGCC 2 cut(s) 299, 311
BspFNI CGCG 1 cut(s) 343
BspOI GCTAGC 1 cut(s) 8
BspPI GGATC 1 cut(s) 243
BsrI ACTGG 1 cut(s) 383
BssECI CCNNGG 7 cut(s) 191, 231, 261, 300, 341, 351, 411
BssMI GATC 1 cut(s) 235
BssT1I CCWWGG 3 cut(s) 261, 351, 411
Bst2UI CCWGG 1 cut(s) 192
Bst4CI ACNGT 1 cut(s) 125
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 1 cut(s) 82
BstDSI CCRYGG 4 cut(s) 231, 261, 341, 411
BstFNI CGCG 1 cut(s) 343
BstKTI GATC 1 cut(s) 238
BstMBI GATC 1 cut(s) 235
BstNI CCWGG 1 cut(s) 192
BstSCI CCNGG 1 cut(s) 190
BstUI CGCG 1 cut(s) 343
BstV1I GCAGC 1 cut(s) 333
BstV2I GAAGAC 2 cut(s) 210, 434
BsuRI GGCC 2 cut(s) 299, 311
BtgI CCRYGG 4 cut(s) 231, 261, 341, 411
Cac8I GCNNGC 1 cut(s) 6
Cfr42I CCGCGG 1 cut(s) 344
CviAII CATG 2 cut(s) 262, 412
DdeI CTNAG 1 cut(s) 82
DpnI GATC 1 cut(s) 237
DpnII GATC 1 cut(s) 235
EaeI YGGCCR 1 cut(s) 309
Eco130I CCWWGG 3 cut(s) 261, 351, 411
Eco88I CYCGRG 1 cut(s) 301
EcoRII CCWGG 1 cut(s) 190
EcoT14I CCWWGG 3 cut(s) 261, 351, 411
ErhI CCWWGG 3 cut(s) 261, 351, 411
FaeI CATG 2 cut(s) 265, 415
FaiI YATR 5 cut(s) 39, 263, 398, 413, 424
FatI CATG 2 cut(s) 261, 411
FauI CCCGC 1 cut(s) 348
Fnu4HI GCNGC 2 cut(s) 344, 347
Fsp4HI GCNGC 2 cut(s) 344, 347
FspBI CTAG 1 cut(s) 5
GluI GCNGC 2 cut(s) 344, 347
HaeIII GGCC 2 cut(s) 299, 311
Hin1II CATG 2 cut(s) 265, 415
HincII GTYRAC 1 cut(s) 161
HindII GTYRAC 1 cut(s) 161
HinfI GANTC 2 cut(s) 78, 157
HphI GGTGA 1 cut(s) 137
Hpy166II GTNNAC 1 cut(s) 161
Hpy188I TCNGA 4 cut(s) 77, 115, 240, 404
Hpy8I GTNNAC 1 cut(s) 161
HpyCH4III ACNGT 1 cut(s) 125
HpyCH4V TGCA 3 cut(s) 64, 317, 330
HpyF3I CTNAG 1 cut(s) 82
Hsp92II CATG 2 cut(s) 265, 415
KspI CCGCGG 1 cut(s) 344
Kzo9I GATC 1 cut(s) 235
LmnI GCTCC 2 cut(s) 116, 289
LpnPI CCDG 3 cut(s) 177, 204, 396
Lsp1109I GCAGC 1 cut(s) 333
MaeI CTAG 1 cut(s) 5
MaeIII GTNAC 1 cut(s) 389
MalI GATC 1 cut(s) 237
MboI GATC 1 cut(s) 235
MboII GAAGA 6 cut(s) 212, 215, 233, 260, 263, 439
MlsI TGGCCA 1 cut(s) 311
MluCI AATT 1 cut(s) 367
MluNI TGGCCA 1 cut(s) 311
MlyI GAGTC 1 cut(s) 166
MmeI TCCRAC 1 cut(s) 138
MnlI CCTC 5 cut(s) 138, 147, 189, 310, 333
Mox20I TGGCCA 1 cut(s) 311
MscI TGGCCA 1 cut(s) 311
Msp20I TGGCCA 1 cut(s) 311
MspA1I CMGCKG 1 cut(s) 343
MspR9I CCNGG 1 cut(s) 192
Mva1269I GAATGC 2 cut(s) 64, 330
MvaI CCWGG 1 cut(s) 192
MvnI CGCG 1 cut(s) 343
NcoI CCATGG 2 cut(s) 261, 411
NdeII GATC 1 cut(s) 235
NheI GCTAGC 1 cut(s) 4
NlaIII CATG 2 cut(s) 265, 415
PctI GAATGC 2 cut(s) 64, 330
PfeI GAWTC 1 cut(s) 78
PflMI CCANNNNNTGG 1 cut(s) 191
PkrI GCNGC 2 cut(s) 345, 348
PleI GAGTC 1 cut(s) 165
PpsI GAGTC 1 cut(s) 165
Psp6I CCWGG 1 cut(s) 190
PspGI CCWGG 1 cut(s) 190
SacII CCGCGG 1 cut(s) 344
SatI GCNGC 2 cut(s) 344, 347
Sau3AI GATC 1 cut(s) 235
SchI GAGTC 1 cut(s) 166
ScrFI CCNGG 1 cut(s) 192
SetI ASST 5 cut(s) 113, 181, 193, 217, 294
Sfr303I CCGCGG 1 cut(s) 344
SgrBI CCGCGG 1 cut(s) 344
Sse9I AATT 1 cut(s) 367
SsiI CCGC 2 cut(s) 341, 343
SspMI CTAG 1 cut(s) 5
StyD4I CCNGG 1 cut(s) 190
StyI CCWWGG 3 cut(s) 261, 351, 411
TaaI ACNGT 1 cut(s) 125
TaqII GACCGA 1 cut(s) 376
TasI AATT 1 cut(s) 367
TauI GCSGC 1 cut(s) 346
TfiI GAWTC 1 cut(s) 78
TseI GCWGC 1 cut(s) 346
TspDTI ATGAA 1 cut(s) 380
TspGWI ACGGA 1 cut(s) 248
Van91I CCANNNNNTGG 1 cut(s) 191
XapI RAATTY 1 cut(s) 367
XspI CTAG 1 cut(s) 5
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.