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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 309, 1006 |
| AclWI | GGATC | 2 cut(s) | 1512, 1521 |
| AcyI | GRCGYC | 2 cut(s) | 310, 1779 |
| AfaI | GTAC | 2 cut(s) | 1425, 1979 |
| AfeI | AGCGCT | 1 cut(s) | 1176 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 319, 552 |
| Alw26I | GTCTC | 1 cut(s) | 1451 |
| AlwI | GGATC | 2 cut(s) | 1512, 1521 |
| Aor51HI | AGCGCT | 1 cut(s) | 1176 |
| AoxI | GGCC | 1 cut(s) | 515 |
| ApeKI | GCWGC | 2 cut(s) | 1091, 1526 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 902, 934, 956, 988, 1820, 1852 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 927, 1304 |
| AspLEI | GCGC | 2 cut(s) | 312, 1177 |
| AsuHPI | GGTGA | 2 cut(s) | 722, 1608 |
| BanI | GGYRCC | 2 cut(s) | 309, 1006 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1020, 1052 |
| BbvI | GCAGC | 2 cut(s) | 1078, 1513 |
| BccI | CCATC | 2 cut(s) | 1408, 2152 |
| BceAI | ACGGC | 1 cut(s) | 297 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1070, 1104 |
| BclI | TGATCA | 1 cut(s) | 715 |
| BcoDI | GTCTC | 1 cut(s) | 1451 |
| BfmI | CTRYAG | 1 cut(s) | 1527 |
| BfoI | RGCGCY | 2 cut(s) | 313, 1178 |
| BisI | GCNGC | 2 cut(s) | 1092, 1527 |
| BlsI | GCNGC | 2 cut(s) | 1093, 1528 |
| BmiI | GGNNCC | 3 cut(s) | 311, 777, 1008 |
| BmsI | GCATC | 2 cut(s) | 532, 1726 |
| BpmI | CTGGAG | 1 cut(s) | 1461 |
| Bpu10I | CCTNAGC | 3 cut(s) | 780, 1117, 2057 |
| BpuEI | CTTGAG | 1 cut(s) | 1906 |
| Bsa29I | ATCGAT | 2 cut(s) | 1516, 2022 |
| BsaHI | GRCGYC | 2 cut(s) | 310, 1779 |
| BsaJI | CCNNGG | 1 cut(s) | 449 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 319, 552 |
| Bse1I | ACTGG | 1 cut(s) | 430 |
| BseCI | ATCGAT | 2 cut(s) | 1516, 2022 |
| BseDI | CCNNGG | 1 cut(s) | 449 |
| BseGI | GGATG | 5 cut(s) | 430, 523, 1112, 1133, 2144 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 319, 552 |
| BseNI | ACTGG | 1 cut(s) | 430 |
| BseRI | GAGGAG | 2 cut(s) | 740, 743 |
| BseXI | GCAGC | 2 cut(s) | 1078, 1513 |
| BseYI | CCCAGC | 1 cut(s) | 1197 |
| BshFI | GGCC | 1 cut(s) | 517 |
| BshNI | GGYRCC | 2 cut(s) | 309, 1006 |
| BshVI | ATCGAT | 2 cut(s) | 1516, 2022 |
| BslFI | GGGAC | 3 cut(s) | 320, 336, 2117 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 319, 552 |
| BsmAI | GTCTC | 1 cut(s) | 1451 |
| BsmFI | GGGAC | 3 cut(s) | 320, 336, 2117 |
| BsmI | GAATGC | 1 cut(s) | 484 |
| BsnI | GGCC | 1 cut(s) | 517 |
| Bsp1407I | TGTACA | 1 cut(s) | 1977 |
| Bsp143I | GATC | 4 cut(s) | 715, 1513, 1517, 2023 |
| BspANI | GGCC | 1 cut(s) | 517 |
| BspDI | ATCGAT | 2 cut(s) | 1516, 2022 |
| BspHI | TCATGA | 2 cut(s) | 568, 1987 |
| BspLI | GGNNCC | 3 cut(s) | 311, 777, 1008 |
| BspMAI | CTGCAG | 1 cut(s) | 1531 |
| BspPI | GGATC | 2 cut(s) | 1512, 1521 |
| BspQI | GCTCTTC | 1 cut(s) | 933 |
| BspT107I | GGYRCC | 2 cut(s) | 309, 1006 |
| BsrGI | TGTACA | 1 cut(s) | 1977 |
| BsrI | ACTGG | 1 cut(s) | 430 |
| BssECI | CCNNGG | 1 cut(s) | 449 |
| BssMI | GATC | 4 cut(s) | 715, 1513, 1517, 2023 |
| BssNI | GRCGYC | 2 cut(s) | 310, 1779 |
| BssT1I | CCWWGG | 1 cut(s) | 449 |
| Bst6I | CTCTTC | 2 cut(s) | 717, 933 |
| BstACI | GRCGYC | 2 cut(s) | 310, 1779 |
| BstAUI | TGTACA | 1 cut(s) | 1977 |
| BstC8I | GCNNGC | 5 cut(s) | 175, 603, 751, 1179, 2138 |
| BstDEI | CTNAG | 6 cut(s) | 651, 780, 1117, 1813, 2006, 2057 |
| BstF5I | GGATG | 5 cut(s) | 430, 523, 1112, 1133, 2144 |
| BstH2I | RGCGCY | 2 cut(s) | 313, 1178 |
| BstHHI | GCGC | 2 cut(s) | 312, 1177 |
| BstKTI | GATC | 4 cut(s) | 718, 1516, 1520, 2026 |
| BstMAI | GTCTC | 1 cut(s) | 1451 |
| BstMBI | GATC | 4 cut(s) | 715, 1513, 1517, 2023 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 36, 755, 874, 1687 |
| BstNSI | RCATGY | 2 cut(s) | 147, 1282 |
| BstSFI | CTRYAG | 1 cut(s) | 1527 |
| BstV1I | GCAGC | 2 cut(s) | 1078, 1513 |
| Bsu15I | ATCGAT | 2 cut(s) | 1516, 2022 |
| BsuRI | GGCC | 1 cut(s) | 517 |
| BsuTUI | ATCGAT | 2 cut(s) | 1516, 2022 |
| BtsCI | GGATG | 5 cut(s) | 430, 523, 1112, 1133, 2144 |
| BtsI | GCAGTG | 1 cut(s) | 1273 |
| BtsIMutI | CAGTG | 1 cut(s) | 1273 |
| Cac8I | GCNNGC | 5 cut(s) | 175, 603, 751, 1179, 2138 |
| CciI | TCATGA | 2 cut(s) | 568, 1987 |
| CfoI | GCGC | 2 cut(s) | 312, 1177 |
| ClaI | ATCGAT | 2 cut(s) | 1516, 2022 |
| CseI | GACGC | 1 cut(s) | 1787 |
| Csp6I | GTAC | 2 cut(s) | 1424, 1978 |
| CviQI | GTAC | 2 cut(s) | 1424, 1978 |
| DdeI | CTNAG | 6 cut(s) | 651, 780, 1117, 1813, 2006, 2057 |
| DinI | GGCGCC | 1 cut(s) | 311 |
| DpnI | GATC | 4 cut(s) | 717, 1515, 1519, 2025 |
| DpnII | GATC | 4 cut(s) | 715, 1513, 1517, 2023 |
| DraI | TTTAAA | 1 cut(s) | 1167 |
| Eam1104I | CTCTTC | 2 cut(s) | 717, 933 |
| EarI | CTCTTC | 2 cut(s) | 717, 933 |
| Eco130I | CCWWGG | 1 cut(s) | 449 |
| Eco47III | AGCGCT | 1 cut(s) | 1176 |
| EcoRI | GAATTC | 1 cut(s) | 1887 |
| EcoT14I | CCWWGG | 1 cut(s) | 449 |
| EcoT22I | ATGCAT | 2 cut(s) | 149, 525 |
| EgeI | GGCGCC | 1 cut(s) | 311 |
| EheI | GGCGCC | 1 cut(s) | 311 |
| ErhI | CCWWGG | 1 cut(s) | 449 |
| FaqI | GGGAC | 3 cut(s) | 320, 336, 2117 |
| FauNDI | CATATG | 3 cut(s) | 497, 823, 1947 |
| FbaI | TGATCA | 1 cut(s) | 715 |
| Fnu4HI | GCNGC | 2 cut(s) | 1092, 1527 |
| FokI | GGATG | 5 cut(s) | 417, 510, 1099, 1120, 2131 |
| Fsp4HI | GCNGC | 2 cut(s) | 1092, 1527 |
| GlaI | GCGC | 2 cut(s) | 311, 1176 |
| GluI | GCNGC | 2 cut(s) | 1092, 1527 |
| GsaI | CCCAGC | 1 cut(s) | 1201 |
| GsuI | CTGGAG | 1 cut(s) | 1461 |
| HaeII | RGCGCY | 2 cut(s) | 313, 1178 |
| HaeIII | GGCC | 1 cut(s) | 517 |
| HgaI | GACGC | 1 cut(s) | 1787 |
| HhaI | GCGC | 2 cut(s) | 312, 1177 |
| Hin1I | GRCGYC | 2 cut(s) | 310, 1779 |
| Hin6I | GCGC | 2 cut(s) | 310, 1175 |
| HinP1I | GCGC | 2 cut(s) | 310, 1175 |
| HindIII | AAGCTT | 2 cut(s) | 747, 782 |
| HinfI | GANTC | 5 cut(s) | 572, 977, 1019, 1852, 1996 |
| HphI | GGTGA | 2 cut(s) | 722, 1608 |
| Hpy166II | GTNNAC | 1 cut(s) | 1777 |
| Hpy188I | TCNGA | 1 cut(s) | 976 |
| Hpy188III | TCNNGA | 7 cut(s) | 569, 719, 788, 1049, 1440, 1894, 1988 |
| Hpy8I | GTNNAC | 1 cut(s) | 1777 |
| HpyAV | CCTTC | 1 cut(s) | 1504 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 36, 755, 874, 1687 |
| HpyF3I | CTNAG | 6 cut(s) | 651, 780, 1117, 1813, 2006, 2057 |
| Hsp92I | GRCGYC | 2 cut(s) | 310, 1779 |
| HspAI | GCGC | 2 cut(s) | 310, 1175 |
| KasI | GGCGCC | 1 cut(s) | 309 |
| Ksp22I | TGATCA | 1 cut(s) | 715 |
| Kzo9I | GATC | 4 cut(s) | 715, 1513, 1517, 2023 |
| LguI | GCTCTTC | 1 cut(s) | 933 |
| LmnI | GCTCC | 1 cut(s) | 598 |
| Lsp1109I | GCAGC | 2 cut(s) | 1078, 1513 |
| LweI | GCATC | 2 cut(s) | 532, 1726 |
| MaeIII | GTNAC | 5 cut(s) | 59, 185, 1123, 1396, 1708 |
| MalI | GATC | 4 cut(s) | 717, 1515, 1519, 2025 |
| MboI | GATC | 4 cut(s) | 715, 1513, 1517, 2023 |
| MfeI | CAATTG | 1 cut(s) | 948 |
| Mly113I | GGCGCC | 1 cut(s) | 310 |
| MlyI | GAGTC | 2 cut(s) | 581, 1028 |
| MmeI | TCCRAC | 2 cut(s) | 636, 954 |
| Mph1103I | ATGCAT | 2 cut(s) | 149, 525 |
| MroXI | GAANNNNTTC | 2 cut(s) | 927, 1304 |
| MseI | TTAA | 8 cut(s) | 182, 1140, 1166, 1328, 1419, 1569, 1932, 2179 |
| MslI | CAYNNNNRTG | 4 cut(s) | 792, 887, 1571, 1761 |
| MunI | CAATTG | 1 cut(s) | 948 |
| Mva1269I | GAATGC | 1 cut(s) | 484 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 36, 755, 874, 1687 |
| NarI | GGCGCC | 1 cut(s) | 310 |
| NdeI | CATATG | 3 cut(s) | 497, 823, 1947 |
| NdeII | GATC | 4 cut(s) | 715, 1513, 1517, 2023 |
| NlaIV | GGNNCC | 3 cut(s) | 311, 777, 1008 |
| NmuCI | GTSAC | 1 cut(s) | 1123 |
| NsiI | ATGCAT | 2 cut(s) | 149, 525 |
| NspI | RCATGY | 2 cut(s) | 147, 1282 |
| PagI | TCATGA | 2 cut(s) | 568, 1987 |
| PciSI | GCTCTTC | 1 cut(s) | 933 |
| PctI | GAATGC | 1 cut(s) | 484 |
| PdmI | GAANNNNTTC | 2 cut(s) | 927, 1304 |
| PfeI | GAWTC | 3 cut(s) | 977, 1852, 1996 |
| PkrI | GCNGC | 2 cut(s) | 1093, 1528 |
| PleI | GAGTC | 2 cut(s) | 580, 1027 |
| PluTI | GGCGCC | 1 cut(s) | 313 |
| PpsI | GAGTC | 2 cut(s) | 580, 1027 |
| PspFI | CCCAGC | 1 cut(s) | 1197 |
| PspN4I | GGNNCC | 3 cut(s) | 311, 777, 1008 |
| PstI | CTGCAG | 1 cut(s) | 1531 |
| RsaI | GTAC | 2 cut(s) | 1425, 1979 |
| RsaNI | GTAC | 2 cut(s) | 1424, 1978 |
| RseI | CAYNNNNRTG | 4 cut(s) | 792, 887, 1571, 1761 |
| SapI | GCTCTTC | 1 cut(s) | 933 |
| SaqAI | TTAA | 8 cut(s) | 182, 1140, 1166, 1328, 1419, 1569, 1932, 2179 |
| SatI | GCNGC | 2 cut(s) | 1092, 1527 |
| Sau3AI | GATC | 4 cut(s) | 715, 1513, 1517, 2023 |
| SchI | GAGTC | 2 cut(s) | 581, 1028 |
| SfaNI | GCATC | 2 cut(s) | 532, 1726 |
| SfcI | CTRYAG | 1 cut(s) | 1527 |
| SfoI | GGCGCC | 1 cut(s) | 311 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 792, 887, 1571, 1761 |
| SmlI | CTYRAG | 1 cut(s) | 1921 |
| SmoI | CTYRAG | 1 cut(s) | 1921 |
| SspDI | GGCGCC | 1 cut(s) | 309 |
| StyI | CCWWGG | 1 cut(s) | 449 |
| TaqI | TCGA | 3 cut(s) | 241, 1516, 2022 |
| TaqII | GACCGA | 1 cut(s) | 492 |
| TatI | WGTACW | 1 cut(s) | 1977 |
| TfiI | GAWTC | 3 cut(s) | 977, 1852, 1996 |
| Tru1I | TTAA | 8 cut(s) | 182, 1140, 1166, 1328, 1419, 1569, 1932, 2179 |
| Tru9I | TTAA | 8 cut(s) | 182, 1140, 1166, 1328, 1419, 1569, 1932, 2179 |
| TscAI | CASTG | 1 cut(s) | 1280 |
| TseFI | GTSAC | 1 cut(s) | 1123 |
| TseI | GCWGC | 2 cut(s) | 1091, 1526 |
| Tsp45I | GTSAC | 1 cut(s) | 1123 |
| TspGWI | ACGGA | 1 cut(s) | 31 |
| TspRI | CASTG | 1 cut(s) | 1280 |
| XceI | RCATGY | 2 cut(s) | 147, 1282 |
| XmnI | GAANNNNTTC | 2 cut(s) | 927, 1304 |
| Zsp2I | ATGCAT | 2 cut(s) | 149, 525 |