pycom01g00630

bile acid:sodium symporter activity

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Forward (+)
643997 .. 645939
1943 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g00630.10

Sequence Viewer

Length: 1347 bp
ATGGATAGCTTGCATATGGAGCATAATGGATGGACGTTTTTGGTAACAAATGATGCAAAAAATGTGAAGCAGCTAAAAGGAAGGAACATTATCAAAACCTTATCCAAACCTAACCTTATCTTATCTTATCCTATCCTAATCTTATCCTACCTTAATTCCAACTCCTTATCCTCTAAATCTGCTGTGCCCTATCCTTGTCCTCCAAGGATTGGTACCGTGAACCCTACTTTAGGGAGAATTTCAGAGAAAAATATAAAGAGTGCTGCAGCTTTGCAAGGAAGGAAGGGGAAGAAGGACTTGTGCCTTGACCTGCCATCCAAGGTCATTGGAGTGCTGGAACGTTTCTGGGTTCTTTCCATCCTTATTTTTAGTTCAATGTTTAAATTAGATTGGTTTTGTTTAATTGAATTGATTACATCCAGTTATTGTTTCGTAAAACATAAATGCGATTTACTTATCTGTTTGATTGAGAACTTGAATTTGATGCTAAAATATAAGGGAATTTCACCTAATAGTTATGAACTTATATTTATAAGGCAGGAGTATCATGCAGTTCATAGTTACGAATGCCTTGTATCTCTATTATGCAGTTTATATAGGGAACTTGATAAGAATAATTTGGTTGCGTTGCTGATGCTATTGACGGTTAACTTGGGGCATTGTCATTCATGGTTTATAGGAATAATAACTGGAAATCGATTGTATGCATATGGTTCATTCACCTTAATTTCGTGCAATCTTTACTTAGTTCTGCAACCTATTAGTTTTAAGTCAATTTTTCGTCCAAACAAACCCCCCTTTCATGTTTTGAGTCAAGTTAGTCAATTTTCGTTCAAATCATCCTCTATCAGTTTAGCTTGTTTTGAGTTGTTTGAGTCTAGTTTTCTCGATCCCTACTTACACATACTACAATTGTCTAAAAGTGGGTTTAATTTGTGTGTTAGTTTTTATCGCATCAAATTTGGGCGCCATTGCCAGGGATTAGCAAAATTGCTAATCTCCCCTTTGTTTTTGTTTTGTTTTTCTTATTTTATGACTCAACGTTCTCAACCTATTTGTGCACATATATTGGAGTTTGACGACGATTTTGAACGAAGTTTGAGAAGGAAGAGGAAGCAACCAGAACCCAATCCACCTAGTTCTAGCTTTGAATCCGAATTGGAAGACAAAGAGGAGGAAGAACAGGACATGGCTATGGACAATCGAACAATCAAGGAACTTTCAGCCTCGGGATTGGACAATGCCGTGCCTATTTGCATTCAATACACTAGGGCAGCTCAAGGCAAGACAGATGAGTTTGAATTGAAGTCTAGTTTGCTGCATCATATTCCCAAATACCATGGGTGA

Protein Analysis

449

Amino Acids

51.25

Weight (kDa)

8.73

Isoelectric Point (pI)

47.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000437)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G06105
fragaria_vesca FvH4_1g09709 FvH4_4g02101 FvH4_4g08975 FvH4_6g23372 FvH4_6g39851 FvH4_c1g00300
malus_domestica MD01G1176100.v1.1 MD09G1284900.v1.1 MD15G1306600.v1.1
prunus_persica Prupe.1G227700_v2.0.a1
pyrus_communis pycom01g00630 pycom01g01020 pycom01g01690 pycom01g01760 pycom01g04190 pycom01g04400 pycom02g18130 pycom03g10160 pycom05g06370 pycom05g08930 pycom06g05590 pycom10g06320 pycom11g14330 pycom11g15320 pycom11g16240 pycom12416g00050 pycom12420g00010 pycom12420g00120 pycom12426g00180 pycom12426g00710 pycom12531g00010 pycom1256g00020 pycom1256g00050 pycom1341g00030 pycom1353g00030 pycom13g23070 pycom13g23210 pycom13g26260 pycom13g26370 pycom13g26470 pycom13g26980 pycom14g08550 pycom14g08850 pycom1534g00040 pycom15g28760 pycom15g31230 pycom1604g00040 pycom16g21900 pycom16g26030 pycom1739g00020 pycom1739g00050 pycom17g12970 pycom17g17960 pycom17g18300 pycom17g18650 pycom2172g00020 pycom2438g00020 pycom436g00370 pycom436g00390 pycom576g00050 pycom76g00020
rosa_chinensis RchiOBHm_Chr1g0320811 RchiOBHm_Chr2g0135321 RchiOBHm_Chr3g0485721 RchiOBHm_Chr7g0236571
rosa_multiflora Rmu_sc0000185.1_g000007 Rmu_sc0002094.1_g000030 Rmu_sc0002764.1_g000007 Rmu_sc0002809.1_g000014 Rmu_sc0003005.1_g000007 Rmu_sc0003798.1_g000005 Rmu_sc0004646.1_g000027 Rmu_sc0004665.1_g000009 Rmu_sc0004818.1_g000001 Rmu_sc0004988.1_g000031 Rmu_sc0006373.1_g000007 Rmu_sc0007142.1_g000015 Rmu_sc0009930.1_g000001 Rmu_sc0011451.1_g000001 Rmu_sc0020424.1_g000001 Rmu_sc0036944.1_g000001 Rmu_ssc0000062.1_g000010
rosa_roxburghii Rroxscaffold_2G00123930 Rroxscaffold_3G00231480 Rroxscaffold_6G00413880
rosa_rugosa Rorug04G0084800
rosa_samantha Rh3BG150500 Rh6DG232400
rosa_wichuraiana Rw2G018400 Rw3G027860 Rw4G021220 Rw6G020670 Rw6G037970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 533
Acc36I ACCTGC 1 cut(s) 318
Acc65I GGTACC 1 cut(s) 212
AccB1I GGYRCC 2 cut(s) 212, 966
AccB7I CCANNNNNTGG 1 cut(s) 209
AclI AACGTT 2 cut(s) 340, 1042
AclWI GGATC 1 cut(s) 884
AcsI RAATTY 4 cut(s) 237, 478, 501, 959
AcyI GRCGYC 1 cut(s) 967
AfaI GTAC 1 cut(s) 214
AfiI CCNNNNNNNGG 3 cut(s) 209, 230, 976
AgsI TTSAA 9 cut(s) 375, 407, 478, 835, 1091, 1151, 1262, 1301, 1306
AjnI CCWGG 1 cut(s) 975
AluBI AGCT 6 cut(s) 9, 73, 269, 857, 1146, 1277
AluI AGCT 6 cut(s) 9, 73, 269, 857, 1146, 1277
Alw21I GWGCWC 1 cut(s) 1063
Alw44I GTGCAC 1 cut(s) 1059
AlwI GGATC 1 cut(s) 884
Ama87I CYCGRG 1 cut(s) 1228
ApaLI GTGCAC 1 cut(s) 1059
ApeKI GCWGC 5 cut(s) 70, 263, 266, 1274, 1318
ApoI RAATTY 4 cut(s) 237, 478, 501, 959
ArsI GACNNNNNNTTYG 2 cut(s) 1070, 1102
Asp718I GGTACC 1 cut(s) 212
AspLEI GCGC 1 cut(s) 969
AsuHPI GGTGA 2 cut(s) 498, 712
AvaI CYCGRG 1 cut(s) 1228
BaeGI GKGCMC 2 cut(s) 189, 1063
BanI GGYRCC 2 cut(s) 212, 966
BbsI GAAGAC 1 cut(s) 1170
Bbv12I GWGCWC 1 cut(s) 1063
BbvI GCAGC 5 cut(s) 82, 250, 278, 1286, 1305
BccI CCATC 3 cut(s) 24, 322, 365
BceAI ACGGC 1 cut(s) 1229
BciT130I CCWGG 1 cut(s) 977
BfaI CTAG 5 cut(s) 879, 1137, 1143, 1269, 1311
BfmI CTRYAG 1 cut(s) 264
BfoI RGCGCY 1 cut(s) 970
BfuAI ACCTGC 1 cut(s) 318
BisI GCNGC 5 cut(s) 71, 264, 267, 1275, 1319
BlsI GCNGC 5 cut(s) 72, 265, 268, 1276, 1320
Bme1390I CCNGG 1 cut(s) 977
BmeT110I CYCGRG 1 cut(s) 1228
BmiI GGNNCC 2 cut(s) 214, 968
BmrFI CCNGG 1 cut(s) 977
BmsI GCATC 5 cut(s) 43, 474, 624, 963, 1330
BpiI GAAGAC 1 cut(s) 1170
BpuEI CTTGAG 1 cut(s) 1263
Bsa29I ATCGAT 1 cut(s) 697
BsaHI GRCGYC 1 cut(s) 967
BsaJI CCNNGG 5 cut(s) 203, 318, 976, 1227, 1339
Bsc4I CCNNNNNNNGG 3 cut(s) 209, 230, 976
Bse1I ACTGG 2 cut(s) 420, 694
Bse3DI GCAATG 1 cut(s) 970
BseBI CCWGG 1 cut(s) 977
BseCI ATCGAT 1 cut(s) 697
BseDI CCNNGG 5 cut(s) 203, 318, 976, 1227, 1339
BseGI GGATG 5 cut(s) 35, 314, 357, 416, 839
BseLI CCNNNNNNNGG 3 cut(s) 209, 230, 976
BseMI GCAATG 1 cut(s) 970
BseNI ACTGG 2 cut(s) 420, 694
BseRI GAGGAG 1 cut(s) 1187
BseSI GKGCMC 2 cut(s) 189, 1063
BseXI GCAGC 5 cut(s) 82, 250, 278, 1286, 1305
BshNI GGYRCC 2 cut(s) 212, 966
BshVI ATCGAT 1 cut(s) 697
BsiHKAI GWGCWC 1 cut(s) 1063
BsiHKCI CYCGRG 1 cut(s) 1228
BslI CCNNNNNNNGG 3 cut(s) 209, 230, 976
BsmI GAATGC 2 cut(s) 572, 1257
BsoBI CYCGRG 1 cut(s) 1228
Bsp1286I GDGCHC 2 cut(s) 189, 1063
Bsp143I GATC 1 cut(s) 889
Bsp19I CCATGG 1 cut(s) 1339
BspDI ATCGAT 1 cut(s) 697
BspLI GGNNCC 2 cut(s) 214, 968
BspMAI CTGCAG 1 cut(s) 268
BspMI ACCTGC 1 cut(s) 318
BspPI GGATC 1 cut(s) 884
BspT107I GGYRCC 2 cut(s) 212, 966
BsrDI GCAATG 1 cut(s) 970
BsrI ACTGG 2 cut(s) 420, 694
BssECI CCNNGG 5 cut(s) 203, 318, 976, 1227, 1339
BssMI GATC 1 cut(s) 889
BssNI GRCGYC 1 cut(s) 967
BssT1I CCWWGG 3 cut(s) 203, 318, 1339
Bst2UI CCWGG 1 cut(s) 977
Bst4CI ACNGT 2 cut(s) 217, 646
Bst6I CTCTTC 1 cut(s) 1103
BstACI GRCGYC 1 cut(s) 967
BstC8I GCNNGC 1 cut(s) 11
BstDEI CTNAG 1 cut(s) 745
BstDSI CCRYGG 1 cut(s) 1339
BstENI CCTNNNNNAGG 1 cut(s) 228
BstF5I GGATG 5 cut(s) 35, 314, 357, 416, 839
BstH2I RGCGCY 1 cut(s) 970
BstHHI GCGC 1 cut(s) 969
BstKTI GATC 1 cut(s) 892
BstMBI GATC 1 cut(s) 889
BstMWI GCNNNNNNNGC 1 cut(s) 19
BstNI CCWGG 1 cut(s) 977
BstSCI CCNGG 1 cut(s) 975
BstSFI CTRYAG 1 cut(s) 264
BstSLI GKGCMC 2 cut(s) 189, 1063
BstV1I GCAGC 5 cut(s) 82, 250, 278, 1286, 1305
BstV2I GAAGAC 1 cut(s) 1170
Bsu15I ATCGAT 1 cut(s) 697
BsuTUI ATCGAT 1 cut(s) 697
BtgI CCRYGG 1 cut(s) 1339
BtsCI GGATG 5 cut(s) 35, 314, 357, 416, 839
BveI ACCTGC 1 cut(s) 318
Cac8I GCNNGC 1 cut(s) 11
CfoI GCGC 1 cut(s) 969
ClaI ATCGAT 1 cut(s) 697
Csp6I GTAC 1 cut(s) 213
CviAII CATG 5 cut(s) 548, 669, 803, 1189, 1340
CviJI RGCY 8 cut(s) 9, 73, 269, 857, 1146, 1193, 1226, 1277
CviKI_1 RGCY 8 cut(s) 9, 73, 269, 857, 1146, 1193, 1226, 1277
CviQI GTAC 1 cut(s) 213
DdeI CTNAG 1 cut(s) 745
DinI GGCGCC 1 cut(s) 968
DpnI GATC 1 cut(s) 891
DpnII GATC 1 cut(s) 889
DraI TTTAAA 1 cut(s) 382
Eam1104I CTCTTC 1 cut(s) 1103
EarI CTCTTC 1 cut(s) 1103
Eco130I CCWWGG 3 cut(s) 203, 318, 1339
Eco88I CYCGRG 1 cut(s) 1228
EcoNI CCTNNNNNAGG 1 cut(s) 228
EcoRII CCWGG 1 cut(s) 975
EcoT14I CCWWGG 3 cut(s) 203, 318, 1339
EcoT22I ATGCAT 1 cut(s) 709
EgeI GGCGCC 1 cut(s) 968
EheI GGCGCC 1 cut(s) 968
ErhI CCWWGG 3 cut(s) 203, 318, 1339
FaeI CATG 5 cut(s) 551, 672, 806, 1192, 1343
FalI AAGNNNNNCTT 2 cut(s) 281, 313
FatI CATG 5 cut(s) 547, 668, 802, 1188, 1339
FauNDI CATATG 2 cut(s) 15, 709
Fnu4HI GCNGC 5 cut(s) 71, 264, 267, 1275, 1319
FokI GGATG 5 cut(s) 42, 301, 344, 403, 826
Fsp4HI GCNGC 5 cut(s) 71, 264, 267, 1275, 1319
FspBI CTAG 5 cut(s) 879, 1137, 1143, 1269, 1311
GlaI GCGC 1 cut(s) 968
GluI GCNGC 5 cut(s) 71, 264, 267, 1275, 1319
HaeII RGCGCY 1 cut(s) 970
HhaI GCGC 1 cut(s) 969
Hin1I GRCGYC 1 cut(s) 967
Hin1II CATG 5 cut(s) 551, 672, 806, 1192, 1343
Hin6I GCGC 1 cut(s) 967
HinP1I GCGC 1 cut(s) 967
HincII GTYRAC 1 cut(s) 649
HindII GTYRAC 1 cut(s) 649
HinfI GANTC 4 cut(s) 811, 875, 1036, 1151
HpaI GTTAAC 1 cut(s) 649
HphI GGTGA 2 cut(s) 498, 712
Hpy166II GTNNAC 3 cut(s) 220, 649, 1061
Hpy188I TCNGA 2 cut(s) 244, 1156
Hpy188III TCNNGA 2 cut(s) 887, 1230
Hpy8I GTNNAC 3 cut(s) 220, 649, 1061
Hpy99I CGWCG 1 cut(s) 1085
HpyAV CCTTC 5 cut(s) 75, 273, 277, 286, 1098
HpyCH4III ACNGT 2 cut(s) 217, 646
HpyCH4IV ACGT 3 cut(s) 35, 340, 1042
HpyF10VI GCNNNNNNNGC 1 cut(s) 19
HpyF3I CTNAG 1 cut(s) 745
HpySE526I ACGT 3 cut(s) 35, 340, 1042
Hsp92I GRCGYC 1 cut(s) 967
Hsp92II CATG 5 cut(s) 551, 672, 806, 1192, 1343
HspAI GCGC 1 cut(s) 967
KasI GGCGCC 1 cut(s) 966
KpnI GGTACC 1 cut(s) 216
KspAI GTTAAC 1 cut(s) 649
Kzo9I GATC 1 cut(s) 889
LmnI GCTCC 1 cut(s) 19
Lsp1109I GCAGC 5 cut(s) 82, 250, 278, 1286, 1305
LweI GCATC 5 cut(s) 43, 474, 624, 963, 1330
MaeI CTAG 5 cut(s) 879, 1137, 1143, 1269, 1311
MaeII ACGT 3 cut(s) 35, 340, 1042
MaeIII GTNAC 2 cut(s) 43, 560
MalI GATC 1 cut(s) 891
MboI GATC 1 cut(s) 889
MboII GAAGA 4 cut(s) 301, 1120, 1175, 1190
MfeI CAATTG 1 cut(s) 911
MhlI GDGCHC 2 cut(s) 189, 1063
Mly113I GGCGCC 1 cut(s) 967
MlyI GAGTC 3 cut(s) 820, 884, 1030
MmeI TCCRAC 1 cut(s) 183
MnlI CCTC 7 cut(s) 181, 210, 853, 1104, 1165, 1168, 1237
Mph1103I ATGCAT 1 cut(s) 709
MseI TTAA 7 cut(s) 153, 381, 401, 648, 725, 768, 930
MslI CAYNNNNRTG 2 cut(s) 329, 1193
MspR9I CCNGG 1 cut(s) 977
MunI CAATTG 1 cut(s) 911
Mva1269I GAATGC 2 cut(s) 572, 1257
MvaI CCWGG 1 cut(s) 977
MwoI GCNNNNNNNGC 1 cut(s) 19
NarI GGCGCC 1 cut(s) 967
NcoI CCATGG 1 cut(s) 1339
NdeI CATATG 2 cut(s) 15, 709
NdeII GATC 1 cut(s) 889
NlaIII CATG 5 cut(s) 551, 672, 806, 1192, 1343
NlaIV GGNNCC 2 cut(s) 214, 968
NsiI ATGCAT 1 cut(s) 709
PctI GAATGC 2 cut(s) 572, 1257
PfeI GAWTC 1 cut(s) 1151
PflMI CCANNNNNTGG 1 cut(s) 209
PkrI GCNGC 5 cut(s) 72, 265, 268, 1276, 1320
PleI GAGTC 3 cut(s) 819, 883, 1030
PluTI GGCGCC 1 cut(s) 970
PpsI GAGTC 3 cut(s) 819, 883, 1030
PsiI TTATAA 1 cut(s) 533
Psp1406I AACGTT 2 cut(s) 340, 1042
Psp6I CCWGG 1 cut(s) 975
PspGI CCWGG 1 cut(s) 975
PspN4I GGNNCC 2 cut(s) 214, 968
PstI CTGCAG 1 cut(s) 268
RsaI GTAC 1 cut(s) 214
RsaNI GTAC 1 cut(s) 213
RseI CAYNNNNRTG 2 cut(s) 329, 1193
SaqAI TTAA 7 cut(s) 153, 381, 401, 648, 725, 768, 930
SatI GCNGC 5 cut(s) 71, 264, 267, 1275, 1319
Sau3AI GATC 1 cut(s) 889
SchI GAGTC 3 cut(s) 820, 884, 1030
ScrFI CCNGG 1 cut(s) 977
SduI GDGCHC 2 cut(s) 189, 1063
SfaNI GCATC 5 cut(s) 43, 474, 624, 963, 1330
SfcI CTRYAG 1 cut(s) 264
SfoI GGCGCC 1 cut(s) 968
SmiMI CAYNNNNRTG 2 cut(s) 329, 1193
SmlI CTYRAG 1 cut(s) 1278
SmoI CTYRAG 1 cut(s) 1278
SspDI GGCGCC 1 cut(s) 966
SspMI CTAG 5 cut(s) 879, 1137, 1143, 1269, 1311
StyD4I CCNGG 1 cut(s) 975
StyI CCWWGG 3 cut(s) 203, 318, 1339
TaaI ACNGT 2 cut(s) 217, 646
TaiI ACGT 3 cut(s) 38, 343, 1045
TaqI TCGA 3 cut(s) 697, 888, 1204
TfiI GAWTC 1 cut(s) 1151
Tru1I TTAA 7 cut(s) 153, 381, 401, 648, 725, 768, 930
Tru9I TTAA 7 cut(s) 153, 381, 401, 648, 725, 768, 930
TseI GCWGC 5 cut(s) 70, 263, 266, 1274, 1318
TspDTI ATGAA 5 cut(s) 534, 545, 657, 705, 791
Van91I CCANNNNNTGG 1 cut(s) 209
VneI GTGCAC 1 cut(s) 1059
XagI CCTNNNNNAGG 1 cut(s) 228
XapI RAATTY 4 cut(s) 237, 478, 501, 959
XspI CTAG 5 cut(s) 879, 1137, 1143, 1269, 1311
Zsp2I ATGCAT 1 cut(s) 709
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.