Rorug04G0084800

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000437
Physical Location & Seq
Forward (+)
12970572 .. 12972486
1915 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0084800.1

Sequence Viewer

Length: 1578 bp
ATGGCTCATCTAGTCACCAAATCCATCTTGTTTTGCTCTCTTCTCACAGTAACGATGCTTGTCACACCCTCCAAATTCCTAAGCTACCACATTGTCCTCTCACTAATTCCCATTATTGCCTACTTCTTCTATTCCATTTCCACTTCCTCTAATCTTCCTCCTGGCCCGCTCTCCCTCCCAATCTTTGGCAACTGGCTCCAATTTGGCAATGACCTCAACCACCGCCTTCTCGCAACCATGTCACAAAACTATGGTCCCATATTCCTCCTCAAACTTGGCTCCAAAAACCTGGCTGTGGTTTCGGACCCCGAGCTAGCAACTCAAGTCCTCCACAGCCAGGGAGTAGAGTTTGGCTCTCGTCCTCGCAACGTTGTCTTCGACATTTTTACTGGCAATGGCCAGGACATGGTGTTCACAGCGTATGGTGATCATTGGCGCAAAATGCGCCGGATCATGACACTACCATTTTTTACCAACAAAGTTGTGCAACATTATAGCAACATGTGGGAGGAGGAAATGGACCAAGTTGTGAATGATCTGAAGAAAGACGAGGGAGTGAAGACTAAAGGGATAGTCATTAGGAAACGCTTGCAACTGATGCTGTACAACATTATGTATAGGATGATGTTTGATGCCAAGTTTGAATCACAAGAGGACCCGTTGTTCGTTGATGCTACCCGGTTTAACTCCGAAAGAAGCCGGTTGGCTCAGAGCTTCGAGTATAACTACGGTGATTTCATTCCATTGCTCAGACCATTTCTAAGAGGGTACTTGAACAAGTGCAGGGACCTGCAAACTAGGCGGCTGGCCTTTTTCAATAACTTTTTCGTTGAGAAAAGAAGGCAAATTATGGCTGCCAATGGAGAGAAGCACAAGATAAGTTGTGCCATAGATCACATAATAGATGCTCAAATGAAGGGTGAGATCAGTGAAGAAAATGTGCTCTACATTGTTGAGAACATTAACGTTGCAGCAATAGAGACAACCCTATGGTCCATGGAATGGGCAATAGCTGAGCTGGTCAACCATCCTACTGTTCAATGCAAGATCCGCGATGAAATCTCAACCGTCCTTAAAGGAGCTCCAGTAACAGAATCCAACCTACATGAATTACCTTACTTGCAAGCGACGGTAAAAGAGACATTAAGGTTGCACACCCCAATACCTTTGTTGGTACCCCATATGAACCTTGAAGAAGCAAAGCTAGGGGGTTATACCATCCCCAGAGAGTCGAAGGTGGTTGTCAATGCATGGTGGCTAGCCAACAACCCTGCGTGGTGGAAAAACCCAGAGGAGTTCCGGCCAGAGCGGTTCTTCAAAGAAGAACTTGGCACAGAGGCTGTGGCTGGTGGTAAGGTCGATTTTAGATATGTGCCATTTGGTATGGGAAGGAGGAGTTGTCCAGGGATCATACTTGCACTGCCAATCCTAGGGCTTGTGATTGCCAAACTGGTGTCAAATTTTGAGATGAAGGCTCCACATGGGGTGGAGAAGATTGATGTGAGTGAAAAAGGAGGGCAGTTCAGCTTACACATAGCAAACCATTCGACTGTTGTGTTCAACCAACTTGTGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 RVT_1 Retrotrans_gag rve

Protein Analysis

525

Amino Acids

59.98

Weight (kDa)

8.4

Isoelectric Point (pI)

43.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 53 - 514 1.2e-110 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000437)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G06105
fragaria_vesca FvH4_1g09709 FvH4_4g02101 FvH4_4g08975 FvH4_6g23372 FvH4_6g39851 FvH4_c1g00300
malus_domestica MD01G1176100.v1.1 MD09G1284900.v1.1 MD15G1306600.v1.1
prunus_persica Prupe.1G227700_v2.0.a1
pyrus_communis pycom01g00630 pycom01g01020 pycom01g01690 pycom01g01760 pycom01g04190 pycom01g04400 pycom02g18130 pycom03g10160 pycom05g06370 pycom05g08930 pycom06g05590 pycom10g06320 pycom11g14330 pycom11g15320 pycom11g16240 pycom12416g00050 pycom12420g00010 pycom12420g00120 pycom12426g00180 pycom12426g00710 pycom12531g00010 pycom1256g00020 pycom1256g00050 pycom1341g00030 pycom1353g00030 pycom13g23070 pycom13g23210 pycom13g26260 pycom13g26370 pycom13g26470 pycom13g26980 pycom14g08550 pycom14g08850 pycom1534g00040 pycom15g28760 pycom15g31230 pycom1604g00040 pycom16g21900 pycom16g26030 pycom1739g00020 pycom1739g00050 pycom17g12970 pycom17g17960 pycom17g18300 pycom17g18650 pycom2172g00020 pycom2438g00020 pycom436g00370 pycom436g00390 pycom576g00050 pycom76g00020
rosa_chinensis RchiOBHm_Chr1g0320811 RchiOBHm_Chr2g0135321 RchiOBHm_Chr3g0485721 RchiOBHm_Chr7g0236571
rosa_multiflora Rmu_sc0000185.1_g000007 Rmu_sc0002094.1_g000030 Rmu_sc0002764.1_g000007 Rmu_sc0002809.1_g000014 Rmu_sc0003005.1_g000007 Rmu_sc0003798.1_g000005 Rmu_sc0004646.1_g000027 Rmu_sc0004665.1_g000009 Rmu_sc0004818.1_g000001 Rmu_sc0004988.1_g000031 Rmu_sc0006373.1_g000007 Rmu_sc0007142.1_g000015 Rmu_sc0009930.1_g000001 Rmu_sc0011451.1_g000001 Rmu_sc0020424.1_g000001 Rmu_sc0036944.1_g000001 Rmu_ssc0000062.1_g000010
rosa_roxburghii Rroxscaffold_2G00123930 Rroxscaffold_3G00231480 Rroxscaffold_6G00413880
rosa_rugosa Rorug04G0084800
rosa_samantha Rh3BG150500 Rh6DG232400
rosa_wichuraiana Rw2G018400 Rw3G027860 Rw4G021220 Rw6G020670 Rw6G037970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 798
Acc65I GGTACC 1 cut(s) 1174
AccB1I GGYRCC 1 cut(s) 1174
AccB7I CCANNNNNTGG 4 cut(s) 185, 406, 1002, 1570
AccBSI CCGCTC 2 cut(s) 169, 1309
AccII CGCG 1 cut(s) 1053
AciI CCGC 5 cut(s) 167, 223, 802, 1051, 1309
AclI AACGTT 2 cut(s) 369, 966
AclWI GGATC 3 cut(s) 458, 1042, 1415
AcoI YGGCCR 2 cut(s) 397, 1301
AcsI RAATTY 2 cut(s) 74, 1459
AcuI CTGAAG 1 cut(s) 560
AfaI GTAC 3 cut(s) 605, 770, 1176
AfiI CCNNNNNNNGG 7 cut(s) 185, 295, 337, 406, 1002, 1430, 1570
AflIII ACRYGT 1 cut(s) 501
AgsI TTSAA 7 cut(s) 644, 775, 817, 1040, 1193, 1318, 1561
AjnI CCWGG 5 cut(s) 160, 288, 336, 399, 1402
AloI GAACNNNNNNTCC 4 cut(s) 395, 427, 647, 679
AluBI AGCT 8 cut(s) 84, 313, 714, 1013, 1018, 1082, 1204, 1527
AluI AGCT 8 cut(s) 84, 313, 714, 1013, 1018, 1082, 1204, 1527
Alw21I GWGCWC 2 cut(s) 945, 1084
Alw26I GTCTC 2 cut(s) 974, 1133
AlwI GGATC 3 cut(s) 458, 1042, 1415
AlwNI CAGNNNCTG 1 cut(s) 1340
Ama87I CYCGRG 1 cut(s) 308
AoxI GGCC 4 cut(s) 163, 397, 807, 1301
ApeKI GCWGC 2 cut(s) 854, 971
ApoI RAATTY 2 cut(s) 74, 1459
ArsI GACNNNNNNTTYG 4 cut(s) 238, 270, 647, 679
Asp718I GGTACC 1 cut(s) 1174
AspA2I CCTAGG 1 cut(s) 1429
AspLEI GCGC 2 cut(s) 438, 447
AspS9I GGNCC 7 cut(s) 164, 254, 304, 520, 655, 787, 993
AsuC2I CCSGG 1 cut(s) 679
AsuHPI GGTGA 4 cut(s) 7, 437, 743, 932
AsuNHI GCTAGC 2 cut(s) 313, 1258
AvaI CYCGRG 1 cut(s) 308
AvaII GGWCC 6 cut(s) 254, 304, 520, 655, 787, 993
AvrII CCTAGG 1 cut(s) 1429
BalI TGGCCA 1 cut(s) 399
BanI GGYRCC 1 cut(s) 1174
BanII GRGCYC 1 cut(s) 1084
BbsI GAAGAC 2 cut(s) 367, 566
Bbv12I GWGCWC 2 cut(s) 945, 1084
BbvI GCAGC 2 cut(s) 841, 983
BccI CCATC 3 cut(s) 32, 1035, 1226
BcgI CGANNNNNNTGC 2 cut(s) 1527, 1561
BciT130I CCWGG 5 cut(s) 162, 290, 338, 401, 1404
BclI TGATCA 1 cut(s) 427
BcnI CCSGG 1 cut(s) 679
BcoDI GTCTC 2 cut(s) 974, 1133
BfaI CTAG 6 cut(s) 11, 314, 798, 1205, 1259, 1430
BfuAI ACCTGC 1 cut(s) 798
BisI GCNGC 3 cut(s) 803, 855, 972
BlnI CCTAGG 1 cut(s) 1429
BlpI GCTNAGC 1 cut(s) 1014
BlsI GCNGC 3 cut(s) 804, 856, 973
Bme1390I CCNGG 6 cut(s) 162, 290, 338, 401, 679, 1404
Bme18I GGWCC 6 cut(s) 254, 304, 520, 655, 787, 993
BmeT110I CYCGRG 1 cut(s) 308
BmgT120I GGNCC 7 cut(s) 164, 254, 304, 520, 655, 787, 993
BmiI GGNNCC 8 cut(s) 197, 256, 280, 306, 657, 788, 1176, 1476
BmrFI CCNGG 6 cut(s) 162, 290, 338, 401, 679, 1404
BmsI GCATC 5 cut(s) 45, 588, 622, 661, 895
BmtI GCTAGC 2 cut(s) 317, 1262
BpiI GAAGAC 2 cut(s) 367, 566
BplI GAGNNNNNCTC 2 cut(s) 338, 370
BpmI CTGGAG 1 cut(s) 1068
Bpu10I CCTNAGC 1 cut(s) 80
Bpu1102I GCTNAGC 1 cut(s) 1014
BpuEI CTTGAG 1 cut(s) 306
BpuMI CCSGG 1 cut(s) 679
BsaJI CCNNGG 4 cut(s) 337, 996, 1403, 1429
BsaXI ACNNNNNCTCC 4 cut(s) 1071, 1101, 1384, 1414
Bsc4I CCNNNNNNNGG 7 cut(s) 185, 295, 337, 406, 1002, 1430, 1570
Bse118I RCCGGY 1 cut(s) 699
Bse1I ACTGG 4 cut(s) 197, 394, 1085, 1455
Bse3DI GCAATG 3 cut(s) 214, 400, 743
BseBI CCWGG 5 cut(s) 162, 290, 338, 401, 1404
BseDI CCNNGG 4 cut(s) 337, 996, 1403, 1429
BseGI GGATG 3 cut(s) 627, 1027, 1218
BseLI CCNNNNNNNGG 7 cut(s) 185, 295, 337, 406, 1002, 1430, 1570
BseMI GCAATG 3 cut(s) 214, 400, 743
BseMII CTCAG 3 cut(s) 722, 763, 1005
BseNI ACTGG 4 cut(s) 197, 394, 1085, 1455
BseRI GAGGAG 4 cut(s) 257, 524, 1307, 1408
BseXI GCAGC 2 cut(s) 841, 983
BsgI GTGCAG 1 cut(s) 802
Bsh1236I CGCG 1 cut(s) 1053
BshFI GGCC 4 cut(s) 165, 399, 809, 1303
BshNI GGYRCC 1 cut(s) 1174
BsiHKAI GWGCWC 2 cut(s) 945, 1084
BsiHKCI CYCGRG 1 cut(s) 308
BsiSI CCGG 4 cut(s) 448, 679, 700, 1300
BslFI GGGAC 2 cut(s) 240, 800
BslI CCNNNNNNNGG 7 cut(s) 185, 295, 337, 406, 1002, 1430, 1570
BsmAI GTCTC 2 cut(s) 974, 1133
BsmFI GGGAC 2 cut(s) 240, 800
BsnI GGCC 4 cut(s) 165, 399, 809, 1303
BsoBI CYCGRG 1 cut(s) 308
Bsp1286I GDGCHC 2 cut(s) 945, 1084
Bsp1407I TGTACA 1 cut(s) 603
Bsp143I GATC 7 cut(s) 427, 450, 535, 892, 924, 1047, 1407
Bsp1720I GCTNAGC 1 cut(s) 1014
Bsp19I CCATGG 1 cut(s) 996
BspACI CCGC 5 cut(s) 167, 223, 802, 1051, 1309
BspANI GGCC 4 cut(s) 165, 399, 809, 1303
BspCNI CTCAG 3 cut(s) 721, 762, 1006
BspFNI CGCG 1 cut(s) 1053
BspHI TCATGA 1 cut(s) 453
BspLI GGNNCC 8 cut(s) 197, 256, 280, 306, 657, 788, 1176, 1476
BspMI ACCTGC 1 cut(s) 798
BspOI GCTAGC 2 cut(s) 317, 1262
BspPI GGATC 3 cut(s) 458, 1042, 1415
BspT107I GGYRCC 1 cut(s) 1174
BsrBI CCGCTC 2 cut(s) 169, 1309
BsrDI GCAATG 3 cut(s) 214, 400, 743
BsrFI RCCGGY 1 cut(s) 699
BsrGI TGTACA 1 cut(s) 603
BsrI ACTGG 4 cut(s) 197, 394, 1085, 1455
BssAI RCCGGY 1 cut(s) 699
BssECI CCNNGG 4 cut(s) 337, 996, 1403, 1429
BssMI GATC 7 cut(s) 427, 450, 535, 892, 924, 1047, 1407
BssT1I CCWWGG 2 cut(s) 996, 1429
Bst2UI CCWGG 5 cut(s) 162, 290, 338, 401, 1404
Bst4CI ACNGT 6 cut(s) 49, 731, 1036, 1069, 1132, 1552
Bst6I CTCTTC 1 cut(s) 45
BstAPI GCANNNNNTGC 1 cut(s) 598
BstAUI TGTACA 1 cut(s) 603
BstC8I GCNNGC 6 cut(s) 167, 315, 590, 807, 1125, 1260
BstDEI CTNAG 5 cut(s) 80, 708, 749, 761, 1014
BstDSI CCRYGG 1 cut(s) 996
BstF5I GGATG 3 cut(s) 627, 1027, 1218
BstFNI CGCG 1 cut(s) 1053
BstHHI GCGC 2 cut(s) 438, 447
BstKTI GATC 7 cut(s) 430, 453, 538, 895, 927, 1050, 1410
BstMAI GTCTC 2 cut(s) 974, 1133
BstMBI GATC 7 cut(s) 427, 450, 535, 892, 924, 1047, 1407
BstMWI GCNNNNNNNGC 5 cut(s) 442, 444, 598, 799, 1050
BstNI CCWGG 5 cut(s) 162, 290, 338, 401, 1404
BstNSI RCATGY 1 cut(s) 505
BstSCI CCNGG 6 cut(s) 160, 288, 336, 399, 677, 1402
BstUI CGCG 1 cut(s) 1053
BstV1I GCAGC 2 cut(s) 841, 983
BstV2I GAAGAC 2 cut(s) 367, 566
BstX2I RGATCY 1 cut(s) 1047
BstXI CCANNNNNNTGG 1 cut(s) 289
BstYI RGATCY 1 cut(s) 1047
BsuRI GGCC 4 cut(s) 165, 399, 809, 1303
BtgI CCRYGG 1 cut(s) 996
BtgZI GCGATG 1 cut(s) 1068
BtsCI GGATG 3 cut(s) 627, 1027, 1218
BtsI GCAGTG 1 cut(s) 1418
BtsIMutI CAGTG 2 cut(s) 934, 1418
BveI ACCTGC 1 cut(s) 798
Cac8I GCNNGC 6 cut(s) 167, 315, 590, 807, 1125, 1260
CaiI CAGNNNCTG 1 cut(s) 1340
CciI TCATGA 1 cut(s) 453
CfoI GCGC 2 cut(s) 438, 447
Cfr10I RCCGGY 1 cut(s) 699
Cfr13I GGNCC 7 cut(s) 164, 254, 304, 520, 655, 787, 993
Csp6I GTAC 3 cut(s) 604, 769, 1175
CviAII CATG 8 cut(s) 238, 406, 454, 502, 997, 1106, 1251, 1481
CviQI GTAC 3 cut(s) 604, 769, 1175
DdeI CTNAG 5 cut(s) 80, 708, 749, 761, 1014
DpnI GATC 7 cut(s) 429, 452, 537, 894, 926, 1049, 1409
DpnII GATC 7 cut(s) 427, 450, 535, 892, 924, 1047, 1407
EaeI YGGCCR 2 cut(s) 397, 1301
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
Ecl136II GAGCTC 1 cut(s) 1082
Eco130I CCWWGG 2 cut(s) 996, 1429
Eco24I GRGCYC 1 cut(s) 1084
Eco47I GGWCC 6 cut(s) 254, 304, 520, 655, 787, 993
Eco53kI GAGCTC 1 cut(s) 1082
Eco57I CTGAAG 1 cut(s) 560
Eco88I CYCGRG 1 cut(s) 308
EcoICRI GAGCTC 1 cut(s) 1082
EcoO109I RGGNCCY 2 cut(s) 655, 787
EcoRII CCWGG 5 cut(s) 160, 288, 336, 399, 1402
EcoT14I CCWWGG 2 cut(s) 996, 1429
EcoT22I ATGCAT 1 cut(s) 1252
EcoT38I GRGCYC 1 cut(s) 1084
ErhI CCWWGG 2 cut(s) 996, 1429
FaeI CATG 8 cut(s) 241, 409, 457, 505, 1000, 1109, 1254, 1484
FalI AAGNNNNNCTT 2 cut(s) 1311, 1343
FaqI GGGAC 2 cut(s) 240, 800
FatI CATG 8 cut(s) 237, 405, 453, 501, 996, 1105, 1250, 1480
FauI CCCGC 1 cut(s) 174
FauNDI CATATG 1 cut(s) 1182
FbaI TGATCA 1 cut(s) 427
Fnu4HI GCNGC 3 cut(s) 803, 855, 972
FokI GGATG 3 cut(s) 634, 1014, 1205
FriOI GRGCYC 1 cut(s) 1084
Fsp4HI GCNGC 3 cut(s) 803, 855, 972
FspBI CTAG 6 cut(s) 11, 314, 798, 1205, 1259, 1430
GlaI GCGC 2 cut(s) 437, 446
GluI GCNGC 3 cut(s) 803, 855, 972
GsuI CTGGAG 1 cut(s) 1068
HaeIII GGCC 4 cut(s) 165, 399, 809, 1303
HapII CCGG 4 cut(s) 448, 679, 700, 1300
HhaI GCGC 2 cut(s) 438, 447
Hin1II CATG 8 cut(s) 241, 409, 457, 505, 1000, 1109, 1254, 1484
Hin6I GCGC 2 cut(s) 436, 445
HinP1I GCGC 2 cut(s) 436, 445
HincII GTYRAC 1 cut(s) 1024
HindII GTYRAC 1 cut(s) 1024
HinfI GANTC 3 cut(s) 644, 1094, 1229
HpaII CCGG 4 cut(s) 448, 679, 700, 1300
HphI GGTGA 4 cut(s) 7, 437, 743, 932
Hpy166II GTNNAC 2 cut(s) 414, 1024
Hpy188I TCNGA 5 cut(s) 304, 540, 691, 711, 752
Hpy188III TCNNGA 1 cut(s) 454
Hpy8I GTNNAC 2 cut(s) 414, 1024
Hpy99I CGWCG 1 cut(s) 1132
HpyAV CCTTC 6 cut(s) 236, 834, 910, 1228, 1383, 1465
HpyCH4III ACNGT 6 cut(s) 49, 731, 1036, 1069, 1132, 1552
HpyCH4IV ACGT 2 cut(s) 369, 966
HpyF10VI GCNNNNNNNGC 5 cut(s) 442, 444, 598, 799, 1050
HpyF3I CTNAG 5 cut(s) 80, 708, 749, 761, 1014
HpySE526I ACGT 2 cut(s) 369, 966
Hsp92II CATG 8 cut(s) 241, 409, 457, 505, 1000, 1109, 1254, 1484
HspAI GCGC 2 cut(s) 436, 445
KpnI GGTACC 1 cut(s) 1178
Ksp22I TGATCA 1 cut(s) 427
Kzo9I GATC 7 cut(s) 427, 450, 535, 892, 924, 1047, 1407
LmnI GCTCC 5 cut(s) 201, 284, 1079, 1087, 1480
Lsp1109I GCAGC 2 cut(s) 841, 983
LweI GCATC 5 cut(s) 45, 588, 622, 661, 895
MaeI CTAG 6 cut(s) 11, 314, 798, 1205, 1259, 1430
MaeII ACGT 2 cut(s) 369, 966
MaeIII GTNAC 5 cut(s) 13, 49, 61, 240, 1087
MalI GATC 7 cut(s) 429, 452, 537, 894, 926, 1049, 1409
MbiI CCGCTC 2 cut(s) 169, 1309
MboI GATC 7 cut(s) 427, 450, 535, 892, 924, 1047, 1407
MflI RGATCY 1 cut(s) 1047
MhlI GDGCHC 2 cut(s) 945, 1084
MlsI TGGCCA 1 cut(s) 399
MluCI AATT 6 cut(s) 74, 105, 200, 846, 1109, 1459
MluNI TGGCCA 1 cut(s) 399
MlyI GAGTC 1 cut(s) 1238
MmeI TCCRAC 1 cut(s) 1122
Mox20I TGGCCA 1 cut(s) 399
Mph1103I ATGCAT 1 cut(s) 1252
MscI TGGCCA 1 cut(s) 399
MseI TTAA 4 cut(s) 684, 963, 1074, 1145
Msp20I TGGCCA 1 cut(s) 399
MspI CCGG 4 cut(s) 448, 679, 700, 1300
MspR9I CCNGG 6 cut(s) 162, 290, 338, 401, 679, 1404
MvaI CCWGG 5 cut(s) 162, 290, 338, 401, 1404
MvnI CGCG 1 cut(s) 1053
MwoI GCNNNNNNNGC 5 cut(s) 442, 444, 598, 799, 1050
NciI CCSGG 1 cut(s) 679
NcoI CCATGG 1 cut(s) 996
NdeI CATATG 1 cut(s) 1182
NdeII GATC 7 cut(s) 427, 450, 535, 892, 924, 1047, 1407
NheI GCTAGC 2 cut(s) 313, 1258
NlaIII CATG 8 cut(s) 241, 409, 457, 505, 1000, 1109, 1254, 1484
NlaIV GGNNCC 8 cut(s) 197, 256, 280, 306, 657, 788, 1176, 1476
NmuCI GTSAC 3 cut(s) 13, 61, 240
NsiI ATGCAT 1 cut(s) 1252
NspI RCATGY 1 cut(s) 505
PagI TCATGA 1 cut(s) 453
PciI ACATGT 1 cut(s) 501
PcsI WCGNNNNNNNCGW 1 cut(s) 375
PfeI GAWTC 2 cut(s) 644, 1094
PflMI CCANNNNNTGG 4 cut(s) 185, 406, 1002, 1570
PkrI GCNGC 3 cut(s) 804, 856, 973
PleI GAGTC 1 cut(s) 1237
PpsI GAGTC 1 cut(s) 1237
PpuMI RGGWCCY 2 cut(s) 655, 787
PscI ACATGT 1 cut(s) 501
Psp124BI GAGCTC 1 cut(s) 1084
Psp1406I AACGTT 2 cut(s) 369, 966
Psp5II RGGWCCY 2 cut(s) 655, 787
Psp6I CCWGG 5 cut(s) 160, 288, 336, 399, 1402
PspGI CCWGG 5 cut(s) 160, 288, 336, 399, 1402
PspN4I GGNNCC 8 cut(s) 197, 256, 280, 306, 657, 788, 1176, 1476
PspPI GGNCC 7 cut(s) 164, 254, 304, 520, 655, 787, 993
PspPPI RGGWCCY 2 cut(s) 655, 787
PstNI CAGNNNCTG 1 cut(s) 1340
PsuI RGATCY 1 cut(s) 1047
RsaI GTAC 3 cut(s) 605, 770, 1176
RsaNI GTAC 3 cut(s) 604, 769, 1175
SacI GAGCTC 1 cut(s) 1084
SaqAI TTAA 4 cut(s) 684, 963, 1074, 1145
SatI GCNGC 3 cut(s) 803, 855, 972
Sau3AI GATC 7 cut(s) 427, 450, 535, 892, 924, 1047, 1407
Sau96I GGNCC 7 cut(s) 164, 254, 304, 520, 655, 787, 993
SchI GAGTC 1 cut(s) 1238
ScrFI CCNGG 6 cut(s) 162, 290, 338, 401, 679, 1404
SduI GDGCHC 2 cut(s) 945, 1084
SfaNI GCATC 5 cut(s) 45, 588, 622, 661, 895
SinI GGWCC 6 cut(s) 254, 304, 520, 655, 787, 993
SmlI CTYRAG 1 cut(s) 321
SmoI CTYRAG 1 cut(s) 321
Sse9I AATT 6 cut(s) 74, 105, 200, 846, 1109, 1459
SsiI CCGC 5 cut(s) 167, 223, 802, 1051, 1309
SspMI CTAG 6 cut(s) 11, 314, 798, 1205, 1259, 1430
SstI GAGCTC 1 cut(s) 1084
StyD4I CCNGG 6 cut(s) 160, 288, 336, 399, 677, 1402
StyI CCWWGG 2 cut(s) 996, 1429
TaaI ACNGT 6 cut(s) 49, 731, 1036, 1069, 1132, 1552
TaiI ACGT 2 cut(s) 372, 969
TaqI TCGA 5 cut(s) 378, 717, 1232, 1359, 1547
TasI AATT 6 cut(s) 74, 105, 200, 846, 1109, 1459
TatI WGTACW 1 cut(s) 603
TauI GCSGC 1 cut(s) 805
TfiI GAWTC 2 cut(s) 644, 1094
Tru1I TTAA 4 cut(s) 684, 963, 1074, 1145
Tru9I TTAA 4 cut(s) 684, 963, 1074, 1145
TscAI CASTG 2 cut(s) 934, 1425
TseFI GTSAC 3 cut(s) 13, 61, 240
TseI GCWGC 2 cut(s) 854, 971
Tsp45I GTSAC 3 cut(s) 13, 61, 240
TspDTI ATGAA 6 cut(s) 727, 929, 1071, 1122, 1199, 1484
TspRI CASTG 2 cut(s) 934, 1425
Van91I CCANNNNNTGG 4 cut(s) 185, 406, 1002, 1570
VpaK11BI GGWCC 6 cut(s) 254, 304, 520, 655, 787, 993
XapI RAATTY 2 cut(s) 74, 1459
XceI RCATGY 1 cut(s) 505
XmaJI CCTAGG 1 cut(s) 1429
XspI CTAG 6 cut(s) 11, 314, 798, 1205, 1259, 1430
Zsp2I ATGCAT 1 cut(s) 1252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.