Rmu_sc0004665.1_g000009

strictosidine synthase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004665.1
OG0000437
Physical Location & Seq
Forward (+)
16616 .. 17699
1084 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004665.1_g000009.1.cds

Sequence Viewer

Length: 1026 bp
atgtatccggaattgatagagcaatgcaatctccttgattaccaaacaaagccaaagaatgatccttatagcaacacttataatccagggtggagaaatcaccctaattttggttggggtgagaatcaaaaccgtgaacaaggtcaaggttaccaaaggcaaggaggtggatatcaaggtgcaagtagcttacatttcaacaatcaaggagcaaacaattcttatcatgctcatagaccaccttatcaagcatcatctcaacaacctctacctctacaacaaccccaagtaccaatacaagaagcaagaaagacacctacctttgaagaaatgatggcggcctttgtgaacaatcaagcaaagcaagatgagaagatcaatgtcatccaacaaagtgtgagcaagcttgaggtacaaatggggcaactagcccatgagttgagccaaaagaagcaaggagtgtttccaagtcaagtgttgagaacagtgcccactaatgaagaagttgtaactccaagagagccatcgggttttgaaaggagattaaagcatgagcaagttgtgttggattacaatgaaggacaagataaggtcttgaaaaacaactcaaattccaaggccaaccatgaaaaaaaagtgtccaatgatcatccaatcaatagaccattccaaagaggtatcactttcaatccttctttgaagattgtgcaaaaagaagaagtgtctctcccttaccctcaagctatatggcaacaagagaaaaaactcaagaaagagagccaattgagggagatgattgatttgttcaagaaggttcatataaacattccactccttgaagccgtgaagacaatcccatcttatgctaagttcttgaaggatatgcgcatgaagaagaaaaagttcaaagaacatgagcaagtggctatttgtgaagaagtgagtgctattagtcaaagaaagcttaaagctcaaagatccgggaagcttcactattccaagcaagattggagaaactacttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 RVT_1 Retrotrans_gag rve

Protein Analysis

341

Amino Acids

39.65

Weight (kDa)

9.51

Isoelectric Point (pI)

43.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000437)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G06105
fragaria_vesca FvH4_1g09709 FvH4_4g02101 FvH4_4g08975 FvH4_6g23372 FvH4_6g39851 FvH4_c1g00300
malus_domestica MD01G1176100.v1.1 MD09G1284900.v1.1 MD15G1306600.v1.1
prunus_persica Prupe.1G227700_v2.0.a1
pyrus_communis pycom01g00630 pycom01g01020 pycom01g01690 pycom01g01760 pycom01g04190 pycom01g04400 pycom02g18130 pycom03g10160 pycom05g06370 pycom05g08930 pycom06g05590 pycom10g06320 pycom11g14330 pycom11g15320 pycom11g16240 pycom12416g00050 pycom12420g00010 pycom12420g00120 pycom12426g00180 pycom12426g00710 pycom12531g00010 pycom1256g00020 pycom1256g00050 pycom1341g00030 pycom1353g00030 pycom13g23070 pycom13g23210 pycom13g26260 pycom13g26370 pycom13g26470 pycom13g26980 pycom14g08550 pycom14g08850 pycom1534g00040 pycom15g28760 pycom15g31230 pycom1604g00040 pycom16g21900 pycom16g26030 pycom1739g00020 pycom1739g00050 pycom17g12970 pycom17g17960 pycom17g18300 pycom17g18650 pycom2172g00020 pycom2438g00020 pycom436g00370 pycom436g00390 pycom576g00050 pycom76g00020
rosa_chinensis RchiOBHm_Chr1g0320811 RchiOBHm_Chr2g0135321 RchiOBHm_Chr3g0485721 RchiOBHm_Chr7g0236571
rosa_multiflora Rmu_sc0000185.1_g000007 Rmu_sc0002094.1_g000030 Rmu_sc0002764.1_g000007 Rmu_sc0002809.1_g000014 Rmu_sc0003005.1_g000007 Rmu_sc0003798.1_g000005 Rmu_sc0004646.1_g000027 Rmu_sc0004665.1_g000009 Rmu_sc0004818.1_g000001 Rmu_sc0004988.1_g000031 Rmu_sc0006373.1_g000007 Rmu_sc0007142.1_g000015 Rmu_sc0009930.1_g000001 Rmu_sc0011451.1_g000001 Rmu_sc0020424.1_g000001 Rmu_sc0036944.1_g000001 Rmu_ssc0000062.1_g000010
rosa_roxburghii Rroxscaffold_2G00123930 Rroxscaffold_3G00231480 Rroxscaffold_6G00413880
rosa_rugosa Rorug04G0084800
rosa_samantha Rh3BG150500 Rh6DG232400
rosa_wichuraiana Rw2G018400 Rw3G027860 Rw4G021220 Rw6G020670 Rw6G037970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 81
Acc16I TGCGCA 1 cut(s) 887
AccIII TCCGGA 1 cut(s) 7
AciI CCGC 1 cut(s) 338
AclWI GGATC 2 cut(s) 56, 972
AcsI RAATTY 1 cut(s) 610
AfaI GTAC 2 cut(s) 291, 414
AfiI CCNNNNNNNGG 2 cut(s) 110, 787
AjnI CCWGG 1 cut(s) 85
AluBI AGCT 6 cut(s) 189, 406, 743, 964, 971, 988
AluI AGCT 6 cut(s) 189, 406, 743, 964, 971, 988
Alw26I GTCTC 1 cut(s) 729
AlwI GGATC 2 cut(s) 56, 972
Aor13HI TCCGGA 1 cut(s) 7
AoxI GGCC 2 cut(s) 339, 618
ApoI RAATTY 1 cut(s) 610
Asp700I GAANNNNTTC 1 cut(s) 902
AspLEI GCGC 1 cut(s) 888
AsuC2I CCSGG 1 cut(s) 982
AsuHPI GGTGA 2 cut(s) 92, 131
BaeGI GKGCMC 1 cut(s) 492
BbsI GAAGAC 1 cut(s) 854
BccI CCATC 3 cut(s) 328, 532, 865
BceAI ACGGC 1 cut(s) 827
BciT130I CCWGG 1 cut(s) 87
BciVI GTATCC 1 cut(s) 15
BclI TGATCA 1 cut(s) 646
BcnI CCSGG 1 cut(s) 982
BcoDI GTCTC 1 cut(s) 729
BfaI CTAG 1 cut(s) 428
BfuI GTATCC 1 cut(s) 15
BisI GCNGC 1 cut(s) 339
BlsI GCNGC 1 cut(s) 340
Bme1390I CCNGG 2 cut(s) 87, 982
BmrFI CCNGG 2 cut(s) 87, 982
BmsI GCATC 1 cut(s) 260
BpiI GAAGAC 1 cut(s) 854
BpuEI CTTGAG 3 cut(s) 428, 723, 752
BpuMI CCSGG 1 cut(s) 982
BsaJI CCNNGG 2 cut(s) 86, 615
BsaWI WCCGGW 1 cut(s) 7
Bsc4I CCNNNNNNNGG 2 cut(s) 110, 787
Bse3DI GCAATG 1 cut(s) 29
BseAI TCCGGA 1 cut(s) 7
BseBI CCWGG 1 cut(s) 87
BseDI CCNNGG 2 cut(s) 86, 615
BseGI GGATG 2 cut(s) 384, 649
BseLI CCNNNNNNNGG 2 cut(s) 110, 787
BseMI GCAATG 1 cut(s) 29
BseSI GKGCMC 1 cut(s) 492
BshFI GGCC 2 cut(s) 341, 620
BsiSI CCGG 2 cut(s) 8, 981
BslI CCNNNNNNNGG 2 cut(s) 110, 787
BsmAI GTCTC 1 cut(s) 729
BsnI GGCC 2 cut(s) 341, 620
Bsp1286I GDGCHC 1 cut(s) 492
Bsp13I TCCGGA 1 cut(s) 7
Bsp143I GATC 4 cut(s) 61, 375, 646, 977
BspACI CCGC 1 cut(s) 338
BspANI GGCC 2 cut(s) 341, 620
BspEI TCCGGA 1 cut(s) 7
BspPI GGATC 2 cut(s) 56, 972
BsrDI GCAATG 1 cut(s) 29
BssECI CCNNGG 2 cut(s) 86, 615
BssMI GATC 4 cut(s) 61, 375, 646, 977
BssT1I CCWWGG 1 cut(s) 615
Bst2UI CCWGG 1 cut(s) 87
Bst4CI ACNGT 2 cut(s) 134, 487
BstC8I GCNNGC 1 cut(s) 404
BstDEI CTNAG 1 cut(s) 867
BstEII GGTNACC 1 cut(s) 149
BstF5I GGATG 2 cut(s) 384, 649
BstHHI GCGC 1 cut(s) 888
BstKTI GATC 4 cut(s) 64, 378, 649, 980
BstMAI GTCTC 1 cut(s) 729
BstMBI GATC 4 cut(s) 61, 375, 646, 977
BstNI CCWGG 1 cut(s) 87
BstPI GGTNACC 1 cut(s) 149
BstSCI CCNGG 2 cut(s) 85, 980
BstSLI GKGCMC 1 cut(s) 492
BstV2I GAAGAC 1 cut(s) 854
BstX2I RGATCY 1 cut(s) 977
BstYI RGATCY 1 cut(s) 977
BsuI GTATCC 1 cut(s) 15
BsuRI GGCC 2 cut(s) 341, 620
BtsCI GGATG 2 cut(s) 384, 649
BtsIMutI CAGTG 1 cut(s) 492
Cac8I GCNNGC 1 cut(s) 404
CfoI GCGC 1 cut(s) 888
Csp6I GTAC 2 cut(s) 290, 413
CviAII CATG 6 cut(s) 227, 434, 551, 626, 889, 914
CviQI GTAC 2 cut(s) 290, 413
DdeI CTNAG 1 cut(s) 867
DpnI GATC 4 cut(s) 63, 377, 648, 979
DpnII GATC 4 cut(s) 61, 375, 646, 977
Eco130I CCWWGG 1 cut(s) 615
Eco32I GATATC 1 cut(s) 173
Eco91I GGTNACC 1 cut(s) 149
EcoO65I GGTNACC 1 cut(s) 149
EcoRII CCWGG 1 cut(s) 85
EcoRV GATATC 1 cut(s) 173
EcoT14I CCWWGG 1 cut(s) 615
ErhI CCWWGG 1 cut(s) 615
FaeI CATG 6 cut(s) 230, 437, 554, 629, 892, 917
FatI CATG 6 cut(s) 226, 433, 550, 625, 888, 913
FbaI TGATCA 1 cut(s) 646
Fnu4HI GCNGC 1 cut(s) 339
FokI GGATG 2 cut(s) 371, 636
Fsp4HI GCNGC 1 cut(s) 339
FspAI RTGCGCAY 1 cut(s) 887
FspBI CTAG 1 cut(s) 428
FspI TGCGCA 1 cut(s) 887
GlaI GCGC 1 cut(s) 887
GluI GCNGC 1 cut(s) 339
HaeIII GGCC 2 cut(s) 341, 620
HapII CCGG 2 cut(s) 8, 981
HhaI GCGC 1 cut(s) 888
Hin1II CATG 6 cut(s) 230, 437, 554, 629, 892, 917
Hin6I GCGC 1 cut(s) 886
HinP1I GCGC 1 cut(s) 886
HindIII AAGCTT 3 cut(s) 404, 962, 986
HinfI GANTC 1 cut(s) 124
HpaII CCGG 2 cut(s) 8, 981
HphI GGTGA 2 cut(s) 92, 131
Hpy166II GTNNAC 2 cut(s) 137, 349
Hpy188III TCNNGA 5 cut(s) 8, 595, 769, 808, 874
Hpy8I GTNNAC 2 cut(s) 137, 349
HpyAV CCTTC 4 cut(s) 572, 702, 805, 871
HpyCH4III ACNGT 2 cut(s) 134, 487
HpyCH4V TGCA 3 cut(s) 27, 182, 709
HpyF3I CTNAG 1 cut(s) 867
Hsp92II CATG 6 cut(s) 230, 437, 554, 629, 892, 917
HspAI GCGC 1 cut(s) 886
Kpn2I TCCGGA 1 cut(s) 7
Ksp22I TGATCA 1 cut(s) 646
Kzo9I GATC 4 cut(s) 61, 375, 646, 977
LmnI GCTCC 1 cut(s) 209
LpnPI CCDG 4 cut(s) 21, 72, 99, 994
LweI GCATC 1 cut(s) 260
MaeI CTAG 1 cut(s) 428
MaeIII GTNAC 2 cut(s) 149, 508
MalI GATC 4 cut(s) 63, 377, 648, 979
MboI GATC 4 cut(s) 61, 375, 646, 977
MboII GAAGA 9 cut(s) 338, 385, 512, 712, 728, 859, 904, 907, 947
MfeI CAATTG 1 cut(s) 782
MflI RGATCY 1 cut(s) 977
MhlI GDGCHC 1 cut(s) 492
MluCI AATT 5 cut(s) 11, 106, 217, 610, 782
MmeI TCCRAC 2 cut(s) 412, 546
MnlI CCTC 7 cut(s) 158, 276, 282, 403, 668, 747, 780
MroI TCCGGA 1 cut(s) 7
MroXI GAANNNNTTC 1 cut(s) 902
MseI TTAA 2 cut(s) 545, 966
MspI CCGG 2 cut(s) 8, 981
MspR9I CCNGG 2 cut(s) 87, 982
MunI CAATTG 1 cut(s) 782
MvaI CCWGG 1 cut(s) 87
NciI CCSGG 1 cut(s) 982
NdeII GATC 4 cut(s) 61, 375, 646, 977
NlaIII CATG 6 cut(s) 230, 437, 554, 629, 892, 917
NsbI TGCGCA 1 cut(s) 887
PdmI GAANNNNTTC 1 cut(s) 902
PfeI GAWTC 1 cut(s) 124
PfoI TCCNGGA 1 cut(s) 980
PkrI GCNGC 1 cut(s) 340
PsiI TTATAA 1 cut(s) 81
Psp6I CCWGG 1 cut(s) 85
PspEI GGTNACC 1 cut(s) 149
PspGI CCWGG 1 cut(s) 85
PsuI RGATCY 1 cut(s) 977
RsaI GTAC 2 cut(s) 291, 414
RsaNI GTAC 2 cut(s) 290, 413
SaqAI TTAA 2 cut(s) 545, 966
SatI GCNGC 1 cut(s) 339
Sau3AI GATC 4 cut(s) 61, 375, 646, 977
ScrFI CCNGG 2 cut(s) 87, 982
SduI GDGCHC 1 cut(s) 492
SfaNI GCATC 1 cut(s) 260
SmlI CTYRAG 3 cut(s) 407, 738, 767
SmoI CTYRAG 3 cut(s) 407, 738, 767
Sse9I AATT 5 cut(s) 11, 106, 217, 610, 782
SsiI CCGC 1 cut(s) 338
SspMI CTAG 1 cut(s) 428
StyD4I CCNGG 2 cut(s) 85, 980
StyI CCWWGG 1 cut(s) 615
TaaI ACNGT 2 cut(s) 134, 487
TasI AATT 5 cut(s) 11, 106, 217, 610, 782
TauI GCSGC 1 cut(s) 341
TfiI GAWTC 1 cut(s) 124
Tru1I TTAA 2 cut(s) 545, 966
Tru9I TTAA 2 cut(s) 545, 966
TscAI CASTG 1 cut(s) 492
TspDTI ATGAA 5 cut(s) 513, 591, 642, 806, 905
TspRI CASTG 1 cut(s) 492
XapI RAATTY 1 cut(s) 610
XmnI GAANNNNTTC 1 cut(s) 902
XspI CTAG 1 cut(s) 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.