RchiOBHm_Chr2g0135321

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000437
Physical Location & Seq
Forward (+)
52400822 .. 52401901
1080 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50624

Sequence Viewer

Length: 1080 bp
ATGAGGGAGATACAAGAAATATTTAAGAAAGTGGATGTCAATATCCCATTGATAGACCTCATTCATCAAGTGCCGGTGTATGCTCAATTTCTCAAGAGCTTGTGCATGAATAAAAAGAAATTTAAAGCCGATGAGACATTTGAGTTGAAGGAGGAAGTAAGTGCAATTATCCAACGAAGACTACCATCAAAGATGCAAGATCCGGGGAGCTTTACCATAGGGTGTACCATAGGAGAGAAAGTGTTTGAAGGAGCTCTCATGGACTTAGGGGCGAGTGTCAATTTGATGCCCTTGGCTATATATCGGAAGCTACAAATTGGTGAGTTGAAGCCCACATCAATTAGATTGCAGTTAGCGGATCGTAGCACAAGGCGTCCGGTGGGAGTTGTAGAGGATGTGCTAGTGAGAGTAAATAAATTTATTCTACCGGCCGACTTTGTAGTGTTGGATATGGGTGACGACCCCTACCTTGACAATGAGTTACCTATCATTCTAGGCCGACCATTTATGGCAACGGCGGGTGTGAAGATCAATGTGTTGAAGGGTACCATTAGACTCAAGGTGTTGGGTGACAAAGTGAAGATCAAAGTATGCAATCCATTCTATCCGCCGAACATTATGAAGGAGGTTTTCTCTATTGATTTGGTGAAGGGTAATGAAGCCAAGAGTGAGCGGATCTTTGGACCCTTGAATCCTTCCAAGCCTACAATCCGTGCACAAGATCATTTCTCACCTATTTGGGGCTATGACCATGAGCCACCATTGAAGCATGATGATGTAGTTCCTACTTCTACTTTGGAGCCTACTATTGAGATTGAAAAGCAACCAACTCCTACTCTTGAGACTTATGAGCAACACAAGAAGAAAAGTTCACCATTGAGTGAAGCACAAGAGGAGTCCATCAAGAAATTAAGGGGGACTTGCGGAGTTGTGAAGAAGAAGGAAATTCCAAAGAGGTATGATTGGCCTCCACCTCCAAGCTACAAGCTCACTTCTTCAATTGCTAGATGTTTTGGAAATGATGGTGAGGCTAGCACAATTGTTGTGGGTGGTAAGAAGACATCCTTTGAGCCACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03410 ko04210 ko04212 ko04214 ko04217 ko05010 map03410 map04210 map04212 map04214 map04217 map05010
Pfam Domains
Protein Families
Exo_endo_phos_2 RVT_1 RVT_3 zf-RVT

Protein Analysis

359

Amino Acids

40.3

Weight (kDa)

8.95

Isoelectric Point (pI)

46.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000437)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G06105
fragaria_vesca FvH4_1g09709 FvH4_4g02101 FvH4_4g08975 FvH4_6g23372 FvH4_6g39851 FvH4_c1g00300
malus_domestica MD01G1176100.v1.1 MD09G1284900.v1.1 MD15G1306600.v1.1
prunus_persica Prupe.1G227700_v2.0.a1
pyrus_communis pycom01g00630 pycom01g01020 pycom01g01690 pycom01g01760 pycom01g04190 pycom01g04400 pycom02g18130 pycom03g10160 pycom05g06370 pycom05g08930 pycom06g05590 pycom10g06320 pycom11g14330 pycom11g15320 pycom11g16240 pycom12416g00050 pycom12420g00010 pycom12420g00120 pycom12426g00180 pycom12426g00710 pycom12531g00010 pycom1256g00020 pycom1256g00050 pycom1341g00030 pycom1353g00030 pycom13g23070 pycom13g23210 pycom13g26260 pycom13g26370 pycom13g26470 pycom13g26980 pycom14g08550 pycom14g08850 pycom1534g00040 pycom15g28760 pycom15g31230 pycom1604g00040 pycom16g21900 pycom16g26030 pycom1739g00020 pycom1739g00050 pycom17g12970 pycom17g17960 pycom17g18300 pycom17g18650 pycom2172g00020 pycom2438g00020 pycom436g00370 pycom436g00390 pycom576g00050 pycom76g00020
rosa_chinensis RchiOBHm_Chr1g0320811 RchiOBHm_Chr2g0135321 RchiOBHm_Chr3g0485721 RchiOBHm_Chr7g0236571
rosa_multiflora Rmu_sc0000185.1_g000007 Rmu_sc0002094.1_g000030 Rmu_sc0002764.1_g000007 Rmu_sc0002809.1_g000014 Rmu_sc0003005.1_g000007 Rmu_sc0003798.1_g000005 Rmu_sc0004646.1_g000027 Rmu_sc0004665.1_g000009 Rmu_sc0004818.1_g000001 Rmu_sc0004988.1_g000031 Rmu_sc0006373.1_g000007 Rmu_sc0007142.1_g000015 Rmu_sc0009930.1_g000001 Rmu_sc0011451.1_g000001 Rmu_sc0020424.1_g000001 Rmu_sc0036944.1_g000001 Rmu_ssc0000062.1_g000010
rosa_roxburghii Rroxscaffold_2G00123930 Rroxscaffold_3G00231480 Rroxscaffold_6G00413880
rosa_rugosa Rorug04G0084800
rosa_samantha Rh3BG150500 Rh6DG232400
rosa_wichuraiana Rw2G018400 Rw3G027860 Rw4G021220 Rw6G020670 Rw6G037970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 545
AccB1I GGYRCC 1 cut(s) 545
AccBSI CCGCTC 1 cut(s) 673
AciI CCGC 5 cut(s) 356, 518, 608, 673, 924
AclWI GGATC 3 cut(s) 194, 366, 683
AcoI YGGCCR 1 cut(s) 429
AcsI RAATTY 3 cut(s) 119, 416, 945
AcyI GRCGYC 1 cut(s) 373
AfaI GTAC 2 cut(s) 226, 547
AfiI CCNNNNNNNGG 1 cut(s) 740
AgsI TTSAA 8 cut(s) 148, 248, 328, 541, 691, 766, 818, 999
AluBI AGCT 6 cut(s) 99, 210, 254, 310, 981, 988
AluI AGCT 6 cut(s) 99, 210, 254, 310, 981, 988
Alw21I GWGCWC 2 cut(s) 256, 718
Alw26I GTCTC 2 cut(s) 128, 836
Alw44I GTGCAC 1 cut(s) 714
AlwI GGATC 3 cut(s) 194, 366, 683
AoxI GGCC 3 cut(s) 429, 496, 965
ApaLI GTGCAC 1 cut(s) 714
ApoI RAATTY 3 cut(s) 119, 416, 945
Asp718I GGTACC 1 cut(s) 545
AspS9I GGNCC 1 cut(s) 683
AsuC2I CCSGG 1 cut(s) 204
AsuHPI GGTGA 7 cut(s) 332, 467, 581, 658, 723, 864, 1037
AsuNHI GCTAGC 1 cut(s) 1031
AvaII GGWCC 1 cut(s) 683
BaeGI GKGCMC 1 cut(s) 718
BanI GGYRCC 1 cut(s) 545
BanII GRGCYC 1 cut(s) 256
BbsI GAAGAC 2 cut(s) 184, 1064
Bbv12I GWGCWC 2 cut(s) 256, 718
BccI CCATC 3 cut(s) 193, 908, 1016
BceAI ACGGC 1 cut(s) 531
BcnI CCSGG 1 cut(s) 204
BcoDI GTCTC 2 cut(s) 128, 836
BfaI CTAG 4 cut(s) 401, 494, 1005, 1032
Bme1390I CCNGG 1 cut(s) 204
Bme18I GGWCC 1 cut(s) 683
BmgT120I GGNCC 1 cut(s) 683
BmiI GGNNCC 3 cut(s) 547, 685, 801
BmrFI CCNGG 1 cut(s) 204
BmsI GCATC 2 cut(s) 183, 276
BmtI GCTAGC 1 cut(s) 1035
BpiI GAAGAC 2 cut(s) 184, 1064
BplI GAGNNNNNCTC 2 cut(s) 617, 649
BpuEI CTTGAG 3 cut(s) 77, 542, 860
BpuMI CCSGG 1 cut(s) 204
BsaHI GRCGYC 1 cut(s) 373
BsaJI CCNNGG 2 cut(s) 203, 291
BsaWI WCCGGW 1 cut(s) 376
BsaXI ACNNNNNCTCC 2 cut(s) 225, 255
Bsc4I CCNNNNNNNGG 1 cut(s) 740
Bse118I RCCGGY 2 cut(s) 73, 427
BseDI CCNNGG 2 cut(s) 203, 291
BseGI GGATG 3 cut(s) 40, 400, 1061
BseLI CCNNNNNNNGG 1 cut(s) 740
BseRI GAGGAG 1 cut(s) 908
BseSI GKGCMC 1 cut(s) 718
BseX3I CGGCCG 1 cut(s) 429
Bsh1285I CGRYCG 1 cut(s) 432
BshFI GGCC 3 cut(s) 431, 498, 967
BshNI GGYRCC 1 cut(s) 545
BsiEI CGRYCG 1 cut(s) 432
BsiHKAI GWGCWC 2 cut(s) 256, 718
BsiSI CCGG 4 cut(s) 74, 203, 377, 428
BslFI GGGAC 1 cut(s) 931
BslI CCNNNNNNNGG 1 cut(s) 740
BsmAI GTCTC 2 cut(s) 128, 836
BsmFI GGGAC 1 cut(s) 931
BsnI GGCC 3 cut(s) 431, 498, 967
Bsp1286I GDGCHC 2 cut(s) 256, 718
Bsp143I GATC 6 cut(s) 199, 358, 528, 582, 675, 721
BspACI CCGC 5 cut(s) 356, 518, 608, 673, 924
BspANI GGCC 3 cut(s) 431, 498, 967
BspLI GGNNCC 3 cut(s) 547, 685, 801
BspOI GCTAGC 1 cut(s) 1035
BspPI GGATC 3 cut(s) 194, 366, 683
BspT107I GGYRCC 1 cut(s) 545
BsrBI CCGCTC 1 cut(s) 673
BsrFI RCCGGY 2 cut(s) 73, 427
BssAI RCCGGY 2 cut(s) 73, 427
BssECI CCNNGG 2 cut(s) 203, 291
BssMI GATC 6 cut(s) 199, 358, 528, 582, 675, 721
BssNI GRCGYC 1 cut(s) 373
BssT1I CCWWGG 1 cut(s) 291
BstACI GRCGYC 1 cut(s) 373
BstC8I GCNNGC 1 cut(s) 1033
BstDEI CTNAG 1 cut(s) 265
BstF5I GGATG 3 cut(s) 40, 400, 1061
BstKTI GATC 6 cut(s) 202, 361, 531, 585, 678, 724
BstMAI GTCTC 2 cut(s) 128, 836
BstMBI GATC 6 cut(s) 199, 358, 528, 582, 675, 721
BstMCI CGRYCG 1 cut(s) 432
BstSCI CCNGG 1 cut(s) 202
BstSLI GKGCMC 1 cut(s) 718
BstV2I GAAGAC 2 cut(s) 184, 1064
BstX2I RGATCY 2 cut(s) 199, 675
BstYI RGATCY 2 cut(s) 199, 675
BstZI CGGCCG 1 cut(s) 429
BsuRI GGCC 3 cut(s) 431, 498, 967
BtsCI GGATG 3 cut(s) 40, 400, 1061
Cac8I GCNNGC 1 cut(s) 1033
Cfr10I RCCGGY 2 cut(s) 73, 427
Cfr13I GGNCC 1 cut(s) 683
CseI GACGC 1 cut(s) 362
Csp6I GTAC 2 cut(s) 225, 546
CspCI CAANNNNNGTGG 2 cut(s) 1026, 1061
CviAII CATG 4 cut(s) 106, 259, 752, 770
CviQI GTAC 2 cut(s) 225, 546
DdeI CTNAG 1 cut(s) 265
DpnI GATC 6 cut(s) 201, 360, 530, 584, 677, 723
DpnII GATC 6 cut(s) 199, 358, 528, 582, 675, 721
DraI TTTAAA 1 cut(s) 124
EaeI YGGCCR 1 cut(s) 429
EagI CGGCCG 1 cut(s) 429
EciI GGCGGA 1 cut(s) 597
Ecl136II GAGCTC 1 cut(s) 254
EclXI CGGCCG 1 cut(s) 429
Eco130I CCWWGG 1 cut(s) 291
Eco24I GRGCYC 1 cut(s) 256
Eco47I GGWCC 1 cut(s) 683
Eco52I CGGCCG 1 cut(s) 429
Eco53kI GAGCTC 1 cut(s) 254
EcoICRI GAGCTC 1 cut(s) 254
EcoT14I CCWWGG 1 cut(s) 291
EcoT38I GRGCYC 1 cut(s) 256
ErhI CCWWGG 1 cut(s) 291
FaeI CATG 4 cut(s) 109, 262, 755, 773
FalI AAGNNNNNCTT 3 cut(s) 904, 936, 1049
FaqI GGGAC 1 cut(s) 931
FatI CATG 4 cut(s) 105, 258, 751, 769
FauI CCCGC 1 cut(s) 511
FokI GGATG 3 cut(s) 47, 407, 1048
FriOI GRGCYC 1 cut(s) 256
FspBI CTAG 4 cut(s) 401, 494, 1005, 1032
HaeIII GGCC 3 cut(s) 431, 498, 967
HapII CCGG 4 cut(s) 74, 203, 377, 428
HgaI GACGC 1 cut(s) 362
Hin1I GRCGYC 1 cut(s) 373
Hin1II CATG 4 cut(s) 109, 262, 755, 773
HinfI GANTC 3 cut(s) 555, 691, 896
HpaII CCGG 4 cut(s) 74, 203, 377, 428
HphI GGTGA 7 cut(s) 332, 467, 581, 658, 723, 864, 1037
Hpy166II GTNNAC 3 cut(s) 225, 716, 872
Hpy188I TCNGA 1 cut(s) 306
Hpy188III TCNNGA 3 cut(s) 94, 839, 904
Hpy8I GTNNAC 3 cut(s) 225, 716, 872
HpyAV CCTTC 7 cut(s) 142, 242, 535, 616, 643, 705, 934
HpyCH4V TGCA 6 cut(s) 105, 164, 196, 349, 594, 716
HpyF3I CTNAG 1 cut(s) 265
Hsp92I GRCGYC 1 cut(s) 373
Hsp92II CATG 4 cut(s) 109, 262, 755, 773
KpnI GGTACC 1 cut(s) 549
Kzo9I GATC 6 cut(s) 199, 358, 528, 582, 675, 721
LmnI GCTCC 3 cut(s) 207, 251, 799
LpnPI CCDG 4 cut(s) 87, 216, 390, 441
LweI GCATC 2 cut(s) 183, 276
MaeI CTAG 4 cut(s) 401, 494, 1005, 1032
MaeIII GTNAC 3 cut(s) 455, 480, 569
MalI GATC 6 cut(s) 201, 360, 530, 584, 677, 723
MbiI CCGCTC 1 cut(s) 673
MboI GATC 6 cut(s) 199, 358, 528, 582, 675, 721
MboII GAAGA 8 cut(s) 189, 538, 592, 874, 946, 949, 987, 1069
MfeI CAATTG 2 cut(s) 999, 1038
MflI RGATCY 2 cut(s) 199, 675
MhlI GDGCHC 2 cut(s) 256, 718
MlyI GAGTC 2 cut(s) 549, 905
MmeI TCCRAC 2 cut(s) 196, 426
MnlI CCTC 9 cut(s) 68, 145, 385, 619, 886, 948, 978, 984, 1021
MseI TTAA 3 cut(s) 24, 123, 911
MslI CAYNNNNRTG 1 cut(s) 774
MspI CCGG 4 cut(s) 74, 203, 377, 428
MspR9I CCNGG 1 cut(s) 204
MunI CAATTG 2 cut(s) 999, 1038
NciI CCSGG 1 cut(s) 204
NdeII GATC 6 cut(s) 199, 358, 528, 582, 675, 721
NheI GCTAGC 1 cut(s) 1031
NlaIII CATG 4 cut(s) 109, 262, 755, 773
NlaIV GGNNCC 3 cut(s) 547, 685, 801
NmuCI GTSAC 2 cut(s) 455, 569
PfeI GAWTC 1 cut(s) 691
PleI GAGTC 2 cut(s) 549, 904
PpsI GAGTC 2 cut(s) 549, 904
Psp124BI GAGCTC 1 cut(s) 256
PspN4I GGNNCC 3 cut(s) 547, 685, 801
PspPI GGNCC 1 cut(s) 683
PsuI RGATCY 2 cut(s) 199, 675
RsaI GTAC 2 cut(s) 226, 547
RsaNI GTAC 2 cut(s) 225, 546
RseI CAYNNNNRTG 1 cut(s) 774
SacI GAGCTC 1 cut(s) 256
SaqAI TTAA 3 cut(s) 24, 123, 911
Sau3AI GATC 6 cut(s) 199, 358, 528, 582, 675, 721
Sau96I GGNCC 1 cut(s) 683
SchI GAGTC 2 cut(s) 549, 905
ScrFI CCNGG 1 cut(s) 204
SduI GDGCHC 2 cut(s) 256, 718
SfaNI GCATC 2 cut(s) 183, 276
SinI GGWCC 1 cut(s) 683
SmiMI CAYNNNNRTG 1 cut(s) 774
SmlI CTYRAG 3 cut(s) 92, 557, 839
SmoI CTYRAG 3 cut(s) 92, 557, 839
SsiI CCGC 5 cut(s) 356, 518, 608, 673, 924
SspI AATATT 1 cut(s) 21
SspMI CTAG 4 cut(s) 401, 494, 1005, 1032
SstI GAGCTC 1 cut(s) 256
StyD4I CCNGG 1 cut(s) 202
StyI CCWWGG 1 cut(s) 291
TfiI GAWTC 1 cut(s) 691
Tru1I TTAA 3 cut(s) 24, 123, 911
Tru9I TTAA 3 cut(s) 24, 123, 911
TseFI GTSAC 2 cut(s) 455, 569
Tsp45I GTSAC 2 cut(s) 455, 569
TspDTI ATGAA 4 cut(s) 53, 122, 635, 672
TspGWI ACGGA 1 cut(s) 701
VneI GTGCAC 1 cut(s) 714
VpaK11BI GGWCC 1 cut(s) 683
XapI RAATTY 3 cut(s) 119, 416, 945
XspI CTAG 4 cut(s) 401, 494, 1005, 1032
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.