MD01G1176100.v1.1

AAA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0000437
Physical Location & Seq
Forward (+)
27683530 .. 27683971
442 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1176100.v1.1.491

Sequence Viewer

Length: 168 bp
ATGGCAGCGGACAATCGAACAATCAAGAAGCTTTCCGCTTCGGGATTGGACAATGCCGCTCCCCTATGCATCCAGTACCCCATGGCTACCCTAAGGAAGACGGACGAGTTCGAATTGAAATCAAGTTTGTTGCATCACATTCCTAAGTTCCACGGGATGTCCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12 Cytochrom_B561

Protein Analysis

56

Amino Acids

6.13

Weight (kDa)

8.98

Isoelectric Point (pI)

31.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000437)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G06105
fragaria_vesca FvH4_1g09709 FvH4_4g02101 FvH4_4g08975 FvH4_6g23372 FvH4_6g39851 FvH4_c1g00300
malus_domestica MD01G1176100.v1.1 MD09G1284900.v1.1 MD15G1306600.v1.1
prunus_persica Prupe.1G227700_v2.0.a1
pyrus_communis pycom01g00630 pycom01g01020 pycom01g01690 pycom01g01760 pycom01g04190 pycom01g04400 pycom02g18130 pycom03g10160 pycom05g06370 pycom05g08930 pycom06g05590 pycom10g06320 pycom11g14330 pycom11g15320 pycom11g16240 pycom12416g00050 pycom12420g00010 pycom12420g00120 pycom12426g00180 pycom12426g00710 pycom12531g00010 pycom1256g00020 pycom1256g00050 pycom1341g00030 pycom1353g00030 pycom13g23070 pycom13g23210 pycom13g26260 pycom13g26370 pycom13g26470 pycom13g26980 pycom14g08550 pycom14g08850 pycom1534g00040 pycom15g28760 pycom15g31230 pycom1604g00040 pycom16g21900 pycom16g26030 pycom1739g00020 pycom1739g00050 pycom17g12970 pycom17g17960 pycom17g18300 pycom17g18650 pycom2172g00020 pycom2438g00020 pycom436g00370 pycom436g00390 pycom576g00050 pycom76g00020
rosa_chinensis RchiOBHm_Chr1g0320811 RchiOBHm_Chr2g0135321 RchiOBHm_Chr3g0485721 RchiOBHm_Chr7g0236571
rosa_multiflora Rmu_sc0000185.1_g000007 Rmu_sc0002094.1_g000030 Rmu_sc0002764.1_g000007 Rmu_sc0002809.1_g000014 Rmu_sc0003005.1_g000007 Rmu_sc0003798.1_g000005 Rmu_sc0004646.1_g000027 Rmu_sc0004665.1_g000009 Rmu_sc0004818.1_g000001 Rmu_sc0004988.1_g000031 Rmu_sc0006373.1_g000007 Rmu_sc0007142.1_g000015 Rmu_sc0009930.1_g000001 Rmu_sc0011451.1_g000001 Rmu_sc0020424.1_g000001 Rmu_sc0036944.1_g000001 Rmu_ssc0000062.1_g000010
rosa_roxburghii Rroxscaffold_2G00123930 Rroxscaffold_3G00231480 Rroxscaffold_6G00413880
rosa_rugosa Rorug04G0084800
rosa_samantha Rh3BG150500 Rh6DG232400
rosa_wichuraiana Rw2G018400 Rw3G027860 Rw4G021220 Rw6G020670 Rw6G037970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 59
AciI CCGC 3 cut(s) 8, 36, 57
AfaI GTAC 1 cut(s) 77
AgsI TTSAA 1 cut(s) 118
AluBI AGCT 1 cut(s) 31
AluI AGCT 1 cut(s) 31
ApeKI GCWGC 1 cut(s) 5
AsuII TTCGAA 1 cut(s) 111
AxyI CCTNAGG 1 cut(s) 92
BbsI GAAGAC 1 cut(s) 104
BbvI GCAGC 1 cut(s) 17
BisI GCNGC 2 cut(s) 6, 57
BlsI GCNGC 2 cut(s) 7, 58
BmsI GCATC 2 cut(s) 78, 142
BpiI GAAGAC 1 cut(s) 104
Bpu14I TTCGAA 1 cut(s) 111
BsaJI CCNNGG 2 cut(s) 81, 151
Bse1I ACTGG 1 cut(s) 73
Bse21I CCTNAGG 1 cut(s) 92
BseDI CCNNGG 2 cut(s) 81, 151
BseGI GGATG 2 cut(s) 69, 162
BseNI ACTGG 1 cut(s) 73
BseXI GCAGC 1 cut(s) 17
Bsp119I TTCGAA 1 cut(s) 111
Bsp19I CCATGG 1 cut(s) 81
BspACI CCGC 3 cut(s) 8, 36, 57
BspT104I TTCGAA 1 cut(s) 111
BsrBI CCGCTC 1 cut(s) 59
BsrI ACTGG 1 cut(s) 73
BssECI CCNNGG 2 cut(s) 81, 151
BssT1I CCWWGG 1 cut(s) 81
BstBI TTCGAA 1 cut(s) 111
BstDEI CTNAG 2 cut(s) 92, 144
BstDSI CCRYGG 2 cut(s) 81, 151
BstF5I GGATG 2 cut(s) 69, 162
BstV1I GCAGC 1 cut(s) 17
BstV2I GAAGAC 1 cut(s) 104
Bsu36I CCTNAGG 1 cut(s) 92
BtgI CCRYGG 2 cut(s) 81, 151
BtsCI GGATG 2 cut(s) 69, 162
Csp6I GTAC 1 cut(s) 76
CviAII CATG 2 cut(s) 82, 163
CviJI RGCY 2 cut(s) 31, 86
CviKI_1 RGCY 2 cut(s) 31, 86
CviQI GTAC 1 cut(s) 76
DdeI CTNAG 2 cut(s) 92, 144
Eco130I CCWWGG 1 cut(s) 81
Eco81I CCTNAGG 1 cut(s) 92
EcoT14I CCWWGG 1 cut(s) 81
EcoT22I ATGCAT 1 cut(s) 71
ErhI CCWWGG 1 cut(s) 81
FaeI CATG 2 cut(s) 85, 166
FaiI YATR 3 cut(s) 67, 83, 164
FatI CATG 2 cut(s) 81, 162
Fnu4HI GCNGC 2 cut(s) 6, 57
FokI GGATG 1 cut(s) 56
Fsp4HI GCNGC 2 cut(s) 6, 57
GluI GCNGC 2 cut(s) 6, 57
Hin1II CATG 2 cut(s) 85, 166
HindIII AAGCTT 1 cut(s) 29
Hpy188III TCNNGA 2 cut(s) 25, 42
HpyCH4V TGCA 2 cut(s) 69, 133
HpyF3I CTNAG 2 cut(s) 92, 144
Hsp92II CATG 2 cut(s) 85, 166
LmnI GCTCC 1 cut(s) 64
LpnPI CCDG 1 cut(s) 86
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 2 cut(s) 78, 142
MbiI CCGCTC 1 cut(s) 59
MboII GAAGA 1 cut(s) 109
MluCI AATT 1 cut(s) 113
Mph1103I ATGCAT 1 cut(s) 71
MspA1I CMGCKG 1 cut(s) 8
NcoI CCATGG 1 cut(s) 81
NlaIII CATG 2 cut(s) 85, 166
NsiI ATGCAT 1 cut(s) 71
NspV TTCGAA 1 cut(s) 111
PkrI GCNGC 2 cut(s) 7, 58
RsaI GTAC 1 cut(s) 77
RsaNI GTAC 1 cut(s) 76
SatI GCNGC 2 cut(s) 6, 57
SetI ASST 1 cut(s) 33
SfaNI GCATC 2 cut(s) 78, 142
SfuI TTCGAA 1 cut(s) 111
SgeI CNNG 7 cut(s) 37, 54, 85, 94, 118, 135, 164
Sse9I AATT 1 cut(s) 113
SsiI CCGC 3 cut(s) 8, 36, 57
StyI CCWWGG 1 cut(s) 81
TaqI TCGA 2 cut(s) 16, 111
TasI AATT 1 cut(s) 113
TauI GCSGC 1 cut(s) 59
TseI GCWGC 1 cut(s) 5
TspGWI ACGGA 1 cut(s) 116
Zsp2I ATGCAT 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.