Rh3BG150500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000437
Physical Location & Seq
Reverse (-)
12769005 .. 12789100
20096 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG150500.1

Sequence Viewer

Length: 471 bp
ATGTGCTCGATTGTGTTGGTGCTTGTCATCTCGTTTCAAGCCCTACAGGCTACAGCCGCGACTTGCCGTCTTGCCGACTTGGACTCTCCACCAGCAACCCCTCTGGTCGTCTCCGTCACTCCGTGGACCGTGATTTGCAGAAATTCCCAGATTTGCAGAAATGATATAATTGCAGAAATTGCAGATTTGAAATTGCAGATTTGGCCTCAAACCTCAGAAGCAGAGGGCCATAATTCGTTTGAGAAAGCTTGTAAACAAATAAAGGTGAGAGGACATCGATATGCCATCAATTCTGATCTGAAGGGTCATCAGGGATTGTATAAGCAAGGTAGACTTTCTTCCCTGAAGGTCAAGCAAAGTCCCTGTTTCCCGCCCCAGATAGTTATAACAAAAAGGAGAAAAAATTGGGGAGATTCTGGGTGGATGCTCCACTATTATCAATATTTACATTCTATTTTTATTTATTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

156

Amino Acids

17.72

Weight (kDa)

9.34

Isoelectric Point (pI)

49.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000437)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G06105
fragaria_vesca FvH4_1g09709 FvH4_4g02101 FvH4_4g08975 FvH4_6g23372 FvH4_6g39851 FvH4_c1g00300
malus_domestica MD01G1176100.v1.1 MD09G1284900.v1.1 MD15G1306600.v1.1
prunus_persica Prupe.1G227700_v2.0.a1
pyrus_communis pycom01g00630 pycom01g01020 pycom01g01690 pycom01g01760 pycom01g04190 pycom01g04400 pycom02g18130 pycom03g10160 pycom05g06370 pycom05g08930 pycom06g05590 pycom10g06320 pycom11g14330 pycom11g15320 pycom11g16240 pycom12416g00050 pycom12420g00010 pycom12420g00120 pycom12426g00180 pycom12426g00710 pycom12531g00010 pycom1256g00020 pycom1256g00050 pycom1341g00030 pycom1353g00030 pycom13g23070 pycom13g23210 pycom13g26260 pycom13g26370 pycom13g26470 pycom13g26980 pycom14g08550 pycom14g08850 pycom1534g00040 pycom15g28760 pycom15g31230 pycom1604g00040 pycom16g21900 pycom16g26030 pycom1739g00020 pycom1739g00050 pycom17g12970 pycom17g17960 pycom17g18300 pycom17g18650 pycom2172g00020 pycom2438g00020 pycom436g00370 pycom436g00390 pycom576g00050 pycom76g00020
rosa_chinensis RchiOBHm_Chr1g0320811 RchiOBHm_Chr2g0135321 RchiOBHm_Chr3g0485721 RchiOBHm_Chr7g0236571
rosa_multiflora Rmu_sc0000185.1_g000007 Rmu_sc0002094.1_g000030 Rmu_sc0002764.1_g000007 Rmu_sc0002809.1_g000014 Rmu_sc0003005.1_g000007 Rmu_sc0003798.1_g000005 Rmu_sc0004646.1_g000027 Rmu_sc0004665.1_g000009 Rmu_sc0004818.1_g000001 Rmu_sc0004988.1_g000031 Rmu_sc0006373.1_g000007 Rmu_sc0007142.1_g000015 Rmu_sc0009930.1_g000001 Rmu_sc0011451.1_g000001 Rmu_sc0020424.1_g000001 Rmu_sc0036944.1_g000001 Rmu_ssc0000062.1_g000010
rosa_roxburghii Rroxscaffold_2G00123930 Rroxscaffold_3G00231480 Rroxscaffold_6G00413880
rosa_rugosa Rorug04G0084800
rosa_samantha Rh3BG150500 Rh6DG232400
rosa_wichuraiana Rw2G018400 Rw3G027860 Rw4G021220 Rw6G020670 Rw6G037970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 386
AccI GTMKAC 1 cut(s) 331
AccII CGCG 1 cut(s) 59
AciI CCGC 2 cut(s) 57, 371
AcsI RAATTY 1 cut(s) 142
AcuI CTGAAG 2 cut(s) 320, 365
AdeI CACNNNGTG 1 cut(s) 123
AgsI TTSAA 2 cut(s) 38, 190
AhdI GACNNNNNGTC 1 cut(s) 66
AluBI AGCT 1 cut(s) 248
AluI AGCT 1 cut(s) 248
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 1 cut(s) 115
AoxI GGCC 2 cut(s) 203, 226
ApoI RAATTY 1 cut(s) 142
AspS9I GGNCC 2 cut(s) 126, 226
AsuHPI GGTGA 1 cut(s) 277
AvaII GGWCC 1 cut(s) 126
BarI GAAGNNNNNNTAC 2 cut(s) 322, 354
Bbv12I GWGCWC 1 cut(s) 8
BccI CCATC 1 cut(s) 293
BceAI ACGGC 1 cut(s) 51
BcoDI GTCTC 1 cut(s) 115
BfmI CTRYAG 2 cut(s) 44, 51
BglI GCCNNNNNGGC 1 cut(s) 47
BisI GCNGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 58
Bme18I GGWCC 1 cut(s) 126
BmeRI GACNNNNNGTC 1 cut(s) 66
BmgT120I GGNCC 2 cut(s) 126, 226
BmsI GCATC 1 cut(s) 414
Bsa29I ATCGAT 1 cut(s) 277
BsaJI CCNNGG 1 cut(s) 122
BseCI ATCGAT 1 cut(s) 277
BseDI CCNNGG 1 cut(s) 122
BseGI GGATG 1 cut(s) 429
BseMII CTCAG 1 cut(s) 228
Bsh1236I CGCG 1 cut(s) 59
BshFI GGCC 2 cut(s) 205, 228
BshVI ATCGAT 1 cut(s) 277
BsiHKAI GWGCWC 1 cut(s) 8
BslFI GGGAC 1 cut(s) 345
BsmAI GTCTC 1 cut(s) 115
BsmBI CGTCTC 1 cut(s) 115
BsmFI GGGAC 1 cut(s) 345
BsnI GGCC 2 cut(s) 205, 228
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 1 cut(s) 295
BspACI CCGC 2 cut(s) 57, 371
BspANI GGCC 2 cut(s) 205, 228
BspCNI CTCAG 1 cut(s) 227
BspDI ATCGAT 1 cut(s) 277
BspFNI CGCG 1 cut(s) 59
BssECI CCNNGG 1 cut(s) 122
BssMI GATC 1 cut(s) 295
Bst4CI ACNGT 1 cut(s) 130
BstAPI GCANNNNNTGC 1 cut(s) 179
BstDEI CTNAG 1 cut(s) 214
BstDSI CCRYGG 1 cut(s) 122
BstF5I GGATG 1 cut(s) 429
BstFNI CGCG 1 cut(s) 59
BstKTI GATC 1 cut(s) 298
BstMAI GTCTC 1 cut(s) 115
BstMBI GATC 1 cut(s) 295
BstMWI GCNNNNNNNGC 4 cut(s) 47, 56, 179, 202
BstSFI CTRYAG 2 cut(s) 44, 51
BstUI CGCG 1 cut(s) 59
Bsu15I ATCGAT 1 cut(s) 277
BsuRI GGCC 2 cut(s) 205, 228
BsuTUI ATCGAT 1 cut(s) 277
BtgI CCRYGG 1 cut(s) 122
BtsCI GGATG 1 cut(s) 429
Cfr13I GGNCC 2 cut(s) 126, 226
ClaI ATCGAT 1 cut(s) 277
CviJI RGCY 6 cut(s) 41, 50, 56, 205, 228, 248
CviKI_1 RGCY 6 cut(s) 41, 50, 56, 205, 228, 248
DdeI CTNAG 1 cut(s) 214
DpnI GATC 1 cut(s) 297
DpnII GATC 1 cut(s) 295
DraIII CACNNNGTG 1 cut(s) 123
DriI GACNNNNNGTC 1 cut(s) 66
Eam1105I GACNNNNNGTC 1 cut(s) 66
Eco47I GGWCC 1 cut(s) 126
Eco57I CTGAAG 2 cut(s) 320, 365
Esp3I CGTCTC 1 cut(s) 115
FaiI YATR 5 cut(s) 167, 231, 282, 321, 386
FalI AAGNNNNNCTT 2 cut(s) 318, 350
FaqI GGGAC 1 cut(s) 345
FauI CCCGC 1 cut(s) 378
FblI GTMKAC 1 cut(s) 331
Fnu4HI GCNGC 1 cut(s) 57
FokI GGATG 1 cut(s) 436
Fsp4HI GCNGC 1 cut(s) 57
GluI GCNGC 1 cut(s) 57
HaeIII GGCC 2 cut(s) 205, 228
HindIII AAGCTT 1 cut(s) 246
HinfI GANTC 2 cut(s) 83, 413
HphI GGTGA 1 cut(s) 277
Hpy166II GTNNAC 3 cut(s) 126, 254, 332
Hpy188I TCNGA 3 cut(s) 217, 295, 300
Hpy8I GTNNAC 3 cut(s) 126, 254, 332
HpyAV CCTTC 2 cut(s) 295, 340
HpyCH4III ACNGT 1 cut(s) 130
HpyCH4V TGCA 5 cut(s) 138, 156, 173, 182, 196
HpyF10VI GCNNNNNNNGC 4 cut(s) 47, 56, 179, 202
HpyF3I CTNAG 1 cut(s) 214
Kzo9I GATC 1 cut(s) 295
LmnI GCTCC 1 cut(s) 432
LpnPI CCDG 9 cut(s) 32, 89, 105, 161, 296, 356, 376, 389, 402
LweI GCATC 1 cut(s) 414
MaeIII GTNAC 1 cut(s) 115
MalI GATC 1 cut(s) 297
MboI GATC 1 cut(s) 295
MboII GAAGA 1 cut(s) 330
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 7 cut(s) 142, 168, 177, 191, 232, 289, 403
MlyI GAGTC 1 cut(s) 77
MnlI CCTC 5 cut(s) 111, 216, 217, 223, 263
MseI TTAA 1 cut(s) 469
MslI CAYNNNNRTG 1 cut(s) 279
MvnI CGCG 1 cut(s) 59
MwoI GCNNNNNNNGC 4 cut(s) 47, 56, 179, 202
NdeII GATC 1 cut(s) 295
NmuCI GTSAC 1 cut(s) 115
PfeI GAWTC 1 cut(s) 413
PkrI GCNGC 1 cut(s) 58
PleI GAGTC 1 cut(s) 77
PpsI GAGTC 1 cut(s) 77
PsiI TTATAA 1 cut(s) 386
PspPI GGNCC 2 cut(s) 126, 226
RseI CAYNNNNRTG 1 cut(s) 279
SaqAI TTAA 1 cut(s) 469
SatI GCNGC 1 cut(s) 57
Sau3AI GATC 1 cut(s) 295
Sau96I GGNCC 2 cut(s) 126, 226
SchI GAGTC 1 cut(s) 77
SduI GDGCHC 1 cut(s) 8
SetI ASST 5 cut(s) 215, 250, 267, 331, 351
SfaNI GCATC 1 cut(s) 414
SfcI CTRYAG 2 cut(s) 44, 51
SinI GGWCC 1 cut(s) 126
SmiMI CAYNNNNRTG 1 cut(s) 279
Sse9I AATT 7 cut(s) 142, 168, 177, 191, 232, 289, 403
SsiI CCGC 2 cut(s) 57, 371
SspI AATATT 1 cut(s) 443
TaaI ACNGT 1 cut(s) 130
TaqI TCGA 2 cut(s) 8, 277
TasI AATT 7 cut(s) 142, 168, 177, 191, 232, 289, 403
TauI GCSGC 1 cut(s) 59
TfiI GAWTC 1 cut(s) 413
Tru1I TTAA 1 cut(s) 469
Tru9I TTAA 1 cut(s) 469
TseFI GTSAC 1 cut(s) 115
Tsp45I GTSAC 1 cut(s) 115
TspGWI ACGGA 2 cut(s) 103, 111
VpaK11BI GGWCC 1 cut(s) 126
XapI RAATTY 1 cut(s) 142
XmiI GTMKAC 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.