transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotrans_gag | PF03732 | 150 - 230 | 7.1e-11 | Retrotransposon gag protein |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 181 |
| Acc16I | TGCGCA | 1 cut(s) | 177 |
| Acc36I | ACCTGC | 4 cut(s) | 181, 494, 508, 1701 |
| AccB1I | GGYRCC | 3 cut(s) | 1412, 1515, 2235 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 868 |
| AccBSI | CCGCTC | 1 cut(s) | 563 |
| AccI | GTMKAC | 2 cut(s) | 1137, 1492 |
| AciI | CCGC | 5 cut(s) | 122, 561, 1101, 1257, 1278 |
| AclI | AACGTT | 1 cut(s) | 481 |
| AclWI | GGATC | 7 cut(s) | 356, 369, 1086, 1658, 1934, 1947, 2451 |
| AcoI | YGGCCR | 2 cut(s) | 783, 2247 |
| AcsI | RAATTY | 2 cut(s) | 383, 1826 |
| AcuI | CTGAAG | 1 cut(s) | 634 |
| AcyI | GRCGYC | 1 cut(s) | 1134 |
| AfaI | GTAC | 6 cut(s) | 341, 491, 823, 1812, 2139, 2145 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 868, 1130, 1165, 1654, 1792, 2245 |
| AflII | CTTAAG | 2 cut(s) | 1832, 1934 |
| AflIII | ACRYGT | 2 cut(s) | 891, 2146 |
| AgeI | ACCGGT | 1 cut(s) | 749 |
| AhlI | ACTAGT | 3 cut(s) | 95, 1231, 2140 |
| AjnI | CCWGG | 3 cut(s) | 286, 1150, 1408 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1356, 1388, 1736, 1768 |
| Alw21I | GWGCWC | 3 cut(s) | 1467, 1724, 1978 |
| Alw26I | GTCTC | 4 cut(s) | 1513, 1903, 2066, 2303 |
| Alw44I | GTGCAC | 1 cut(s) | 1974 |
| AlwI | GGATC | 7 cut(s) | 356, 369, 1086, 1658, 1934, 1947, 2451 |
| AoxI | GGCC | 5 cut(s) | 297, 783, 1031, 1881, 2247 |
| ApaLI | GTGCAC | 1 cut(s) | 1974 |
| ApeKI | GCWGC | 4 cut(s) | 316, 708, 1174, 1280 |
| ApoI | RAATTY | 2 cut(s) | 383, 1826 |
| AseI | ATTAAT | 4 cut(s) | 2019, 2159, 2225, 2352 |
| AsiGI | ACCGGT | 1 cut(s) | 749 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1859, 2397 |
| AspA2I | CCTAGG | 1 cut(s) | 2117 |
| AspLEI | GCGC | 2 cut(s) | 178, 2203 |
| AspS9I | GGNCC | 2 cut(s) | 1145, 1882 |
| AsuC2I | CCSGG | 1 cut(s) | 1068 |
| AvaII | GGWCC | 1 cut(s) | 1145 |
| AvrII | CCTAGG | 1 cut(s) | 2117 |
| AxyI | CCTNAGG | 2 cut(s) | 907, 933 |
| BaeGI | GKGCMC | 3 cut(s) | 1518, 1978, 2240 |
| BalI | TGGCCA | 1 cut(s) | 2249 |
| BamHI | GGATCC | 2 cut(s) | 361, 1939 |
| BanI | GGYRCC | 3 cut(s) | 1412, 1515, 2235 |
| BanII | GRGCYC | 2 cut(s) | 1467, 1724 |
| BauI | CACGAG | 1 cut(s) | 188 |
| Bbv12I | GWGCWC | 3 cut(s) | 1467, 1724, 1978 |
| BbvI | GCAGC | 4 cut(s) | 328, 720, 1186, 1292 |
| BceAI | ACGGC | 1 cut(s) | 135 |
| BciT130I | CCWGG | 3 cut(s) | 288, 1152, 1410 |
| BclI | TGATCA | 5 cut(s) | 961, 1624, 1987, 2082, 2098 |
| BcnI | CCSGG | 1 cut(s) | 1068 |
| BcoDI | GTCTC | 4 cut(s) | 1513, 1903, 2066, 2303 |
| BcuI | ACTAGT | 3 cut(s) | 95, 1231, 2140 |
| BfaI | CTAG | 9 cut(s) | 96, 1170, 1232, 1401, 1422, 2057, 2118, 2141, 2503 |
| BfmI | CTRYAG | 2 cut(s) | 501, 2169 |
| BfoI | RGCGCY | 1 cut(s) | 2204 |
| BfrI | CTTAAG | 2 cut(s) | 1832, 1934 |
| BfuAI | ACCTGC | 4 cut(s) | 181, 494, 508, 1701 |
| BglII | AGATCT | 1 cut(s) | 2362 |
| BisI | GCNGC | 4 cut(s) | 317, 709, 1175, 1281 |
| BlnI | CCTAGG | 1 cut(s) | 2117 |
| BlpI | GCTNAGC | 2 cut(s) | 1332, 1461 |
| BlsI | GCNGC | 4 cut(s) | 318, 710, 1176, 1282 |
| BmcAI | AGTACT | 1 cut(s) | 341 |
| Bme1390I | CCNGG | 4 cut(s) | 288, 1068, 1152, 1410 |
| Bme18I | GGWCC | 1 cut(s) | 1145 |
| BmgT120I | GGNCC | 2 cut(s) | 1145, 1882 |
| BmiI | GGNNCC | 7 cut(s) | 204, 363, 860, 1414, 1517, 1941, 2237 |
| BmrFI | CCNGG | 4 cut(s) | 288, 1068, 1152, 1410 |
| BmsI | GCATC | 6 cut(s) | 223, 463, 1268, 1312, 1383, 1786 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1327 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 1332, 1461 |
| BpuEI | CTTGAG | 4 cut(s) | 6, 1113, 1195, 2207 |
| BpuMI | CCSGG | 1 cut(s) | 1068 |
| Bsa29I | ATCGAT | 1 cut(s) | 1608 |
| BsaAI | YACGTR | 1 cut(s) | 2147 |
| BsaHI | GRCGYC | 1 cut(s) | 1134 |
| BsaJI | CCNNGG | 2 cut(s) | 39, 2117 |
| BsaWI | WCCGGW | 1 cut(s) | 749 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1390, 1420 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 868, 1130, 1165, 1654, 1792, 2245 |
| Bse118I | RCCGGY | 1 cut(s) | 749 |
| Bse1I | ACTGG | 1 cut(s) | 2004 |
| Bse21I | CCTNAGG | 2 cut(s) | 907, 933 |
| Bse3DI | GCAATG | 3 cut(s) | 919, 2475, 2485 |
| BseBI | CCWGG | 3 cut(s) | 288, 1152, 1410 |
| BseCI | ATCGAT | 1 cut(s) | 1608 |
| BseDI | CCNNGG | 2 cut(s) | 39, 2117 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 868, 1130, 1165, 1654, 1792, 2245 |
| BseMI | GCAATG | 3 cut(s) | 919, 2475, 2485 |
| BseMII | CTCAG | 9 cut(s) | 348, 451, 572, 947, 990, 1346, 1452, 1829, 1914 |
| BseNI | ACTGG | 1 cut(s) | 2004 |
| BseRI | GAGGAG | 8 cut(s) | 158, 161, 164, 598, 849, 1185, 1188, 1568 |
| BseSI | GKGCMC | 3 cut(s) | 1518, 1978, 2240 |
| BseXI | GCAGC | 4 cut(s) | 328, 720, 1186, 1292 |
| BsgI | GTGCAG | 1 cut(s) | 335 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1608 |
| BshFI | GGCC | 5 cut(s) | 299, 785, 1033, 1883, 2249 |
| BshNI | GGYRCC | 3 cut(s) | 1412, 1515, 2235 |
| BshTI | ACCGGT | 1 cut(s) | 749 |
| BshVI | ATCGAT | 1 cut(s) | 1608 |
| BsiEI | CGRYCG | 1 cut(s) | 1608 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1467, 1724, 1978 |
| BsiSI | CCGG | 2 cut(s) | 750, 1067 |
| BslFI | GGGAC | 2 cut(s) | 621, 745 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 868, 1130, 1165, 1654, 1792, 2245 |
| BsmAI | GTCTC | 4 cut(s) | 1513, 1903, 2066, 2303 |
| BsmFI | GGGAC | 2 cut(s) | 621, 745 |
| BsmI | GAATGC | 2 cut(s) | 178, 907 |
| BsnI | GGCC | 5 cut(s) | 299, 785, 1033, 1883, 2249 |
| Bsp1286I | GDGCHC | 5 cut(s) | 1467, 1518, 1724, 1978, 2240 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 1332, 1461 |
| BspACI | CCGC | 5 cut(s) | 122, 561, 1101, 1257, 1278 |
| BspANI | GGCC | 5 cut(s) | 299, 785, 1033, 1883, 2249 |
| BspCNI | CTCAG | 9 cut(s) | 349, 450, 573, 946, 991, 1345, 1453, 1828, 1913 |
| BspDI | ATCGAT | 1 cut(s) | 1608 |
| BspHI | TCATGA | 2 cut(s) | 738, 1716 |
| BspLI | GGNNCC | 7 cut(s) | 204, 363, 860, 1414, 1517, 1941, 2237 |
| BspMAI | CTGCAG | 2 cut(s) | 505, 2173 |
| BspMI | ACCTGC | 4 cut(s) | 181, 494, 508, 1701 |
| BspPI | GGATC | 7 cut(s) | 356, 369, 1086, 1658, 1934, 1947, 2451 |
| BspT107I | GGYRCC | 3 cut(s) | 1412, 1515, 2235 |
| BspTI | CTTAAG | 2 cut(s) | 1832, 1934 |
| BsrBI | CCGCTC | 1 cut(s) | 563 |
| BsrDI | GCAATG | 3 cut(s) | 919, 2475, 2485 |
| BsrFI | RCCGGY | 1 cut(s) | 749 |
| BsrI | ACTGG | 1 cut(s) | 2004 |
| BssAI | RCCGGY | 1 cut(s) | 749 |
| BssECI | CCNNGG | 2 cut(s) | 39, 2117 |
| BssNI | GRCGYC | 1 cut(s) | 1134 |
| BssSI | CACGAG | 1 cut(s) | 188 |
| BssT1I | CCWWGG | 2 cut(s) | 39, 2117 |
| Bst2BI | CACGAG | 1 cut(s) | 188 |
| Bst2UI | CCWGG | 3 cut(s) | 288, 1152, 1410 |
| Bst4CI | ACNGT | 2 cut(s) | 1390, 2314 |
| Bst6I | CTCTTC | 4 cut(s) | 192, 1539, 1734, 1794 |
| BstACI | GRCGYC | 1 cut(s) | 1134 |
| BstAFI | CTTAAG | 2 cut(s) | 1832, 1934 |
| BstBAI | YACGTR | 1 cut(s) | 2147 |
| BstC8I | GCNNGC | 2 cut(s) | 2169, 2476 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1128 |
| BstH2I | RGCGCY | 1 cut(s) | 2204 |
| BstHHI | GCGC | 2 cut(s) | 178, 2203 |
| BstMAI | GTCTC | 4 cut(s) | 1513, 1903, 2066, 2303 |
| BstMCI | CGRYCG | 1 cut(s) | 1608 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 33, 1030, 1375 |
| BstNI | CCWGG | 3 cut(s) | 288, 1152, 1410 |
| BstNSI | RCATGY | 2 cut(s) | 726, 895 |
| BstSCI | CCNGG | 4 cut(s) | 286, 1066, 1150, 1408 |
| BstSFI | CTRYAG | 2 cut(s) | 501, 2169 |
| BstSLI | GKGCMC | 3 cut(s) | 1518, 1978, 2240 |
| BstV1I | GCAGC | 4 cut(s) | 328, 720, 1186, 1292 |
| BstX2I | RGATCY | 5 cut(s) | 361, 1663, 1939, 2362, 2443 |
| BstYI | RGATCY | 5 cut(s) | 361, 1663, 1939, 2362, 2443 |
| Bsu15I | ATCGAT | 1 cut(s) | 1608 |
| Bsu36I | CCTNAGG | 2 cut(s) | 907, 933 |
| BsuRI | GGCC | 5 cut(s) | 299, 785, 1033, 1883, 2249 |
| BsuTUI | ATCGAT | 1 cut(s) | 1608 |
| BtgZI | GCGATG | 1 cut(s) | 1573 |
| BtsIMutI | CAGTG | 1 cut(s) | 2319 |
| BveI | ACCTGC | 4 cut(s) | 181, 494, 508, 1701 |
| Cac8I | GCNNGC | 2 cut(s) | 2169, 2476 |
| CciI | TCATGA | 2 cut(s) | 738, 1716 |
| CfoI | GCGC | 2 cut(s) | 178, 2203 |
| Cfr10I | RCCGGY | 1 cut(s) | 749 |
| Cfr13I | GGNCC | 2 cut(s) | 1145, 1882 |
| ClaI | ATCGAT | 1 cut(s) | 1608 |
| CseI | GACGC | 2 cut(s) | 1123, 1956 |
| Csp6I | GTAC | 6 cut(s) | 340, 490, 822, 1811, 2138, 2144 |
| CspAI | ACCGGT | 1 cut(s) | 749 |
| CviQI | GTAC | 6 cut(s) | 340, 490, 822, 1811, 2138, 2144 |
| EaeI | YGGCCR | 2 cut(s) | 783, 2247 |
| Eam1104I | CTCTTC | 4 cut(s) | 192, 1539, 1734, 1794 |
| EarI | CTCTTC | 4 cut(s) | 192, 1539, 1734, 1794 |
| Ecl136II | GAGCTC | 2 cut(s) | 1465, 1722 |
| Eco130I | CCWWGG | 2 cut(s) | 39, 2117 |
| Eco147I | AGGCCT | 2 cut(s) | 299, 1033 |
| Eco24I | GRGCYC | 2 cut(s) | 1467, 1724 |
| Eco47I | GGWCC | 1 cut(s) | 1145 |
| Eco53kI | GAGCTC | 2 cut(s) | 1465, 1722 |
| Eco57I | CTGAAG | 1 cut(s) | 634 |
| Eco81I | CCTNAGG | 2 cut(s) | 907, 933 |
| EcoICRI | GAGCTC | 2 cut(s) | 1465, 1722 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1128 |
| EcoRI | GAATTC | 1 cut(s) | 383 |
| EcoRII | CCWGG | 3 cut(s) | 286, 1150, 1408 |
| EcoT14I | CCWWGG | 2 cut(s) | 39, 2117 |
| EcoT22I | ATGCAT | 1 cut(s) | 272 |
| EcoT38I | GRGCYC | 2 cut(s) | 1467, 1724 |
| ErhI | CCWWGG | 2 cut(s) | 39, 2117 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 15, 47, 1736, 1768 |
| FaqI | GGGAC | 2 cut(s) | 621, 745 |
| FauI | CCCGC | 2 cut(s) | 115, 568 |
| FbaI | TGATCA | 5 cut(s) | 961, 1624, 1987, 2082, 2098 |
| FblI | GTMKAC | 2 cut(s) | 1137, 1492 |
| Fnu4HI | GCNGC | 4 cut(s) | 317, 709, 1175, 1281 |
| FriOI | GRGCYC | 2 cut(s) | 1467, 1724 |
| Fsp4HI | GCNGC | 4 cut(s) | 317, 709, 1175, 1281 |
| FspBI | CTAG | 9 cut(s) | 96, 1170, 1232, 1401, 1422, 2057, 2118, 2141, 2503 |
| FspI | TGCGCA | 1 cut(s) | 177 |
| GlaI | GCGC | 2 cut(s) | 177, 2202 |
| GluI | GCNGC | 4 cut(s) | 317, 709, 1175, 1281 |
| HaeII | RGCGCY | 1 cut(s) | 2204 |
| HaeIII | GGCC | 5 cut(s) | 299, 785, 1033, 1883, 2249 |
| HapII | CCGG | 2 cut(s) | 750, 1067 |
| HgaI | GACGC | 2 cut(s) | 1123, 1956 |
| HhaI | GCGC | 2 cut(s) | 178, 2203 |
| Hin1I | GRCGYC | 1 cut(s) | 1134 |
| Hin6I | GCGC | 2 cut(s) | 176, 2201 |
| HinP1I | GCGC | 2 cut(s) | 176, 2201 |
| HindIII | AAGCTT | 1 cut(s) | 1919 |
| HpaII | CCGG | 2 cut(s) | 750, 1067 |
| Hpy166II | GTNNAC | 5 cut(s) | 373, 1138, 1493, 1780, 1976 |
| Hpy8I | GTNNAC | 5 cut(s) | 373, 1138, 1493, 1780, 1976 |
| HpyCH4III | ACNGT | 2 cut(s) | 1390, 2314 |
| HpyCH4IV | ACGT | 4 cut(s) | 481, 820, 1113, 2146 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 33, 1030, 1375 |
| HpySE526I | ACGT | 4 cut(s) | 481, 820, 1113, 2146 |
| Hsp92I | GRCGYC | 1 cut(s) | 1134 |
| HspAI | GCGC | 2 cut(s) | 176, 2201 |
| Ksp22I | TGATCA | 5 cut(s) | 961, 1624, 1987, 2082, 2098 |
| LmnI | GCTCC | 3 cut(s) | 1555, 1837, 2009 |
| Lsp1109I | GCAGC | 4 cut(s) | 328, 720, 1186, 1292 |
| LweI | GCATC | 6 cut(s) | 223, 463, 1268, 1312, 1383, 1786 |
| MaeI | CTAG | 9 cut(s) | 96, 1170, 1232, 1401, 1422, 2057, 2118, 2141, 2503 |
| MaeII | ACGT | 4 cut(s) | 481, 820, 1113, 2146 |
| MaeIII | GTNAC | 4 cut(s) | 441, 495, 1684, 2314 |
| MbiI | CCGCTC | 1 cut(s) | 563 |
| MfeI | CAATTG | 2 cut(s) | 1496, 2496 |
| MflI | RGATCY | 5 cut(s) | 361, 1663, 1939, 2362, 2443 |
| MhlI | GDGCHC | 5 cut(s) | 1467, 1518, 1724, 1978, 2240 |
| MlsI | TGGCCA | 1 cut(s) | 2249 |
| MluNI | TGGCCA | 1 cut(s) | 2249 |
| MlyI | GAGTC | 3 cut(s) | 207, 429, 1240 |
| MmeI | TCCRAC | 3 cut(s) | 269, 448, 1183 |
| Mox20I | TGGCCA | 1 cut(s) | 2249 |
| Mph1103I | ATGCAT | 1 cut(s) | 272 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1859, 2397 |
| MscI | TGGCCA | 1 cut(s) | 2249 |
| MslI | CAYNNNNRTG | 2 cut(s) | 896, 2270 |
| Msp20I | TGGCCA | 1 cut(s) | 2249 |
| MspA1I | CMGCKG | 1 cut(s) | 1904 |
| MspCI | CTTAAG | 2 cut(s) | 1832, 1934 |
| MspI | CCGG | 2 cut(s) | 750, 1067 |
| MspR9I | CCNGG | 4 cut(s) | 288, 1068, 1152, 1410 |
| MunI | CAATTG | 2 cut(s) | 1496, 2496 |
| Mva1269I | GAATGC | 2 cut(s) | 178, 907 |
| MvaI | CCWGG | 3 cut(s) | 288, 1152, 1410 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 33, 1030, 1375 |
| NciI | CCSGG | 1 cut(s) | 1068 |
| NlaIV | GGNNCC | 7 cut(s) | 204, 363, 860, 1414, 1517, 1941, 2237 |
| NmeAIII | GCCGAG | 1 cut(s) | 2427 |
| NmuCI | GTSAC | 1 cut(s) | 2314 |
| NsbI | TGCGCA | 1 cut(s) | 177 |
| NsiI | ATGCAT | 1 cut(s) | 272 |
| NspI | RCATGY | 2 cut(s) | 726, 895 |
| PagI | TCATGA | 2 cut(s) | 738, 1716 |
| PaqCI | CACCTGC | 1 cut(s) | 181 |
| PceI | AGGCCT | 2 cut(s) | 299, 1033 |
| PciI | ACATGT | 1 cut(s) | 891 |
| PctI | GAATGC | 2 cut(s) | 178, 907 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1859, 2397 |
| PfeI | GAWTC | 9 cut(s) | 44, 257, 592, 716, 851, 1155, 1303, 1957, 2453 |
| PflFI | GACNNNGTC | 1 cut(s) | 665 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 868 |
| PfoI | TCCNGGA | 1 cut(s) | 1066 |
| PinAI | ACCGGT | 1 cut(s) | 749 |
| PkrI | GCNGC | 4 cut(s) | 318, 710, 1176, 1282 |
| Ple19I | CGATCG | 1 cut(s) | 1608 |
| PleI | GAGTC | 3 cut(s) | 207, 429, 1240 |
| PpsI | GAGTC | 3 cut(s) | 207, 429, 1240 |
| Ppu21I | YACGTR | 1 cut(s) | 2147 |
| PscI | ACATGT | 1 cut(s) | 891 |
| PshBI | ATTAAT | 4 cut(s) | 2019, 2159, 2225, 2352 |
| Psp124BI | GAGCTC | 2 cut(s) | 1467, 1724 |
| Psp1406I | AACGTT | 1 cut(s) | 481 |
| Psp6I | CCWGG | 3 cut(s) | 286, 1150, 1408 |
| PspGI | CCWGG | 3 cut(s) | 286, 1150, 1408 |
| PspN4I | GGNNCC | 7 cut(s) | 204, 363, 860, 1414, 1517, 1941, 2237 |
| PspPI | GGNCC | 2 cut(s) | 1145, 1882 |
| PstI | CTGCAG | 2 cut(s) | 505, 2173 |
| PsuI | RGATCY | 5 cut(s) | 361, 1663, 1939, 2362, 2443 |
| PsyI | GACNNNGTC | 1 cut(s) | 665 |
| PvuI | CGATCG | 1 cut(s) | 1608 |
| PvuII | CAGCTG | 1 cut(s) | 1904 |
| RsaI | GTAC | 6 cut(s) | 341, 491, 823, 1812, 2139, 2145 |
| RsaNI | GTAC | 6 cut(s) | 340, 490, 822, 1811, 2138, 2144 |
| RseI | CAYNNNNRTG | 2 cut(s) | 896, 2270 |
| SacI | GAGCTC | 2 cut(s) | 1467, 1724 |
| SatI | GCNGC | 4 cut(s) | 317, 709, 1175, 1281 |
| Sau96I | GGNCC | 2 cut(s) | 1145, 1882 |
| SbfI | CCTGCAGG | 1 cut(s) | 505 |
| ScaI | AGTACT | 1 cut(s) | 341 |
| SchI | GAGTC | 3 cut(s) | 207, 429, 1240 |
| ScrFI | CCNGG | 4 cut(s) | 288, 1068, 1152, 1410 |
| SdaI | CCTGCAGG | 1 cut(s) | 505 |
| SduI | GDGCHC | 5 cut(s) | 1467, 1518, 1724, 1978, 2240 |
| SfaNI | GCATC | 6 cut(s) | 223, 463, 1268, 1312, 1383, 1786 |
| SfcI | CTRYAG | 2 cut(s) | 501, 2169 |
| SinI | GGWCC | 1 cut(s) | 1145 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 896, 2270 |
| SmlI | CTYRAG | 6 cut(s) | 21, 1128, 1210, 1832, 1934, 2186 |
| SmoI | CTYRAG | 6 cut(s) | 21, 1128, 1210, 1832, 1934, 2186 |
| SpeI | ACTAGT | 3 cut(s) | 95, 1231, 2140 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 505 |
| SseBI | AGGCCT | 2 cut(s) | 299, 1033 |
| SsiI | CCGC | 5 cut(s) | 122, 561, 1101, 1257, 1278 |
| SspI | AATATT | 1 cut(s) | 554 |
| SspMI | CTAG | 9 cut(s) | 96, 1170, 1232, 1401, 1422, 2057, 2118, 2141, 2503 |
| SstI | GAGCTC | 2 cut(s) | 1467, 1724 |
| StuI | AGGCCT | 2 cut(s) | 299, 1033 |
| StyD4I | CCNGG | 4 cut(s) | 286, 1066, 1150, 1408 |
| StyI | CCWWGG | 2 cut(s) | 39, 2117 |
| TaaI | ACNGT | 2 cut(s) | 1390, 2314 |
| TaiI | ACGT | 4 cut(s) | 484, 823, 1116, 2149 |
| TaqI | TCGA | 7 cut(s) | 216, 849, 1052, 1120, 1608, 2015, 2401 |
| TatI | WGTACW | 3 cut(s) | 339, 489, 2137 |
| TfiI | GAWTC | 9 cut(s) | 44, 257, 592, 716, 851, 1155, 1303, 1957, 2453 |
| TscAI | CASTG | 1 cut(s) | 2319 |
| TseFI | GTSAC | 1 cut(s) | 2314 |
| TseI | GCWGC | 4 cut(s) | 316, 708, 1174, 1280 |
| Tsp45I | GTSAC | 1 cut(s) | 2314 |
| TspDTI | ATGAA | 9 cut(s) | 727, 755, 858, 914, 1276, 1625, 1680, 1705, 2233 |
| TspGWI | ACGGA | 2 cut(s) | 1082, 1754 |
| TspRI | CASTG | 1 cut(s) | 2319 |
| Tth111I | GACNNNGTC | 1 cut(s) | 665 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 868 |
| Vha464I | CTTAAG | 2 cut(s) | 1832, 1934 |
| VneI | GTGCAC | 1 cut(s) | 1974 |
| VpaK11BI | GGWCC | 1 cut(s) | 1145 |
| VspI | ATTAAT | 4 cut(s) | 2019, 2159, 2225, 2352 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1128 |
| XapI | RAATTY | 2 cut(s) | 383, 1826 |
| XceI | RCATGY | 2 cut(s) | 726, 895 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1092 |
| XmaJI | CCTAGG | 1 cut(s) | 2117 |
| XmiI | GTMKAC | 2 cut(s) | 1137, 1492 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1859, 2397 |
| XspI | CTAG | 9 cut(s) | 96, 1170, 1232, 1401, 1422, 2057, 2118, 2141, 2503 |
| ZrmI | AGTACT | 1 cut(s) | 341 |
| Zsp2I | ATGCAT | 1 cut(s) | 272 |