pycom13g23070

protein kinase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0000437
Physical Location & Seq
Forward (+)
20766385 .. 20767221
837 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g23070.3

Sequence Viewer

Length: 591 bp
ATGCAACCATATTTTCATCACATTCATATTTACATTCTGCCCTTAATTACAATCTGTGCATTTTATTTAACCTCGTCAAAAACTCAATCCCCCTTTATTTTGTTAAGTCTTAGTCGTTACAATCTATTTTATTTTGTGTCTTTAAGCATTTGGAGTCATAAACACGTTCAAATTCTCATAGTAGTCTTGTTAAGAGTCTTTAAGTTTAGTTTTTGTGTTTTTAAGTCAATTTATATTAGATTAGCACCCCTAGTTAATCCCCGGTTAGATCGATCCCTACTTACATCATTACTACAATTGTCACAAATAGGGTTTAATTTGTGTGTCACATTCGTATCGCATCAAATTTTGGCGCCGTTGCCGGGGATTAGCAAAGTTGCTAATCCCTTTTTTCTTTTTTTGCACCGTGTGTGTGTGTGTTTTGTTTTTGTGCCGTGTGTGGCACCTTATTTCATTACTTGTGCCGAGTCTATTAGATTGATTGCTAACCTTGTTTGTTCTTGTGTGCAGCATATCTCCGACTTTGACGGTGATTTCGAGAGGACTTTGAGAAGGAAAAAGAAATTGCAAGCGTCTAATCCTCCTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 RVT_1 Retrotrans_gag rve

Protein Analysis

197

Amino Acids

22.56

Weight (kDa)

9.55

Isoelectric Point (pI)

49.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000437)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G06105
fragaria_vesca FvH4_1g09709 FvH4_4g02101 FvH4_4g08975 FvH4_6g23372 FvH4_6g39851 FvH4_c1g00300
malus_domestica MD01G1176100.v1.1 MD09G1284900.v1.1 MD15G1306600.v1.1
prunus_persica Prupe.1G227700_v2.0.a1
pyrus_communis pycom01g00630 pycom01g01020 pycom01g01690 pycom01g01760 pycom01g04190 pycom01g04400 pycom02g18130 pycom03g10160 pycom05g06370 pycom05g08930 pycom06g05590 pycom10g06320 pycom11g14330 pycom11g15320 pycom11g16240 pycom12416g00050 pycom12420g00010 pycom12420g00120 pycom12426g00180 pycom12426g00710 pycom12531g00010 pycom1256g00020 pycom1256g00050 pycom1341g00030 pycom1353g00030 pycom13g23070 pycom13g23210 pycom13g26260 pycom13g26370 pycom13g26470 pycom13g26980 pycom14g08550 pycom14g08850 pycom1534g00040 pycom15g28760 pycom15g31230 pycom1604g00040 pycom16g21900 pycom16g26030 pycom1739g00020 pycom1739g00050 pycom17g12970 pycom17g17960 pycom17g18300 pycom17g18650 pycom2172g00020 pycom2438g00020 pycom436g00370 pycom436g00390 pycom576g00050 pycom76g00020
rosa_chinensis RchiOBHm_Chr1g0320811 RchiOBHm_Chr2g0135321 RchiOBHm_Chr3g0485721 RchiOBHm_Chr7g0236571
rosa_multiflora Rmu_sc0000185.1_g000007 Rmu_sc0002094.1_g000030 Rmu_sc0002764.1_g000007 Rmu_sc0002809.1_g000014 Rmu_sc0003005.1_g000007 Rmu_sc0003798.1_g000005 Rmu_sc0004646.1_g000027 Rmu_sc0004665.1_g000009 Rmu_sc0004818.1_g000001 Rmu_sc0004988.1_g000031 Rmu_sc0006373.1_g000007 Rmu_sc0007142.1_g000015 Rmu_sc0009930.1_g000001 Rmu_sc0011451.1_g000001 Rmu_sc0020424.1_g000001 Rmu_sc0036944.1_g000001 Rmu_ssc0000062.1_g000010
rosa_roxburghii Rroxscaffold_2G00123930 Rroxscaffold_3G00231480 Rroxscaffold_6G00413880
rosa_rugosa Rorug04G0084800
rosa_samantha Rh3BG150500 Rh6DG232400
rosa_wichuraiana Rw2G018400 Rw3G027860 Rw4G021220 Rw6G020670 Rw6G037970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 352, 442
AclWI GGATC 1 cut(s) 267
AcsI RAATTY 2 cut(s) 171, 345
AcyI GRCGYC 1 cut(s) 353
AdeI CACNNNGTG 1 cut(s) 409
AfiI CCNNNNNNNGG 1 cut(s) 362
AflIII ACRYGT 1 cut(s) 163
AgsI TTSAA 1 cut(s) 170
AlwI GGATC 1 cut(s) 267
ApeKI GCWGC 1 cut(s) 508
ApoI RAATTY 2 cut(s) 171, 345
ArsI GACNNNNNNTTYG 2 cut(s) 518, 550
AspLEI GCGC 1 cut(s) 355
AsuC2I CCSGG 2 cut(s) 262, 363
AsuHPI GGTGA 1 cut(s) 542
BaeI ACNNNNGTAYC 2 cut(s) 318, 351
BanI GGYRCC 2 cut(s) 352, 442
BbvI GCAGC 1 cut(s) 520
BceAI ACGGC 2 cut(s) 340, 418
BcnI CCSGG 2 cut(s) 262, 363
BfaI CTAG 2 cut(s) 251, 585
BfoI RGCGCY 1 cut(s) 356
BisI GCNGC 1 cut(s) 509
BlsI GCNGC 1 cut(s) 510
Bme1390I CCNGG 2 cut(s) 262, 363
BmiI GGNNCC 2 cut(s) 354, 444
BmrFI CCNGG 2 cut(s) 262, 363
BmsI GCATC 1 cut(s) 349
BpuMI CCSGG 2 cut(s) 262, 363
Bsa29I ATCGAT 1 cut(s) 271
BsaHI GRCGYC 1 cut(s) 353
BsaJI CCNNGG 2 cut(s) 260, 362
Bsc4I CCNNNNNNNGG 1 cut(s) 362
BseCI ATCGAT 1 cut(s) 271
BseDI CCNNGG 2 cut(s) 260, 362
BseLI CCNNNNNNNGG 1 cut(s) 362
BseXI GCAGC 1 cut(s) 520
BsgI GTGCAG 1 cut(s) 527
BshNI GGYRCC 2 cut(s) 352, 442
BshVI ATCGAT 1 cut(s) 271
BsiSI CCGG 2 cut(s) 262, 362
BslI CCNNNNNNNGG 1 cut(s) 362
Bsp143I GATC 2 cut(s) 268, 272
BspDI ATCGAT 1 cut(s) 271
BspLI GGNNCC 2 cut(s) 354, 444
BspPI GGATC 1 cut(s) 267
BspT107I GGYRCC 2 cut(s) 352, 442
BssECI CCNNGG 2 cut(s) 260, 362
BssMI GATC 2 cut(s) 268, 272
BssNI GRCGYC 1 cut(s) 353
Bst4CI ACNGT 2 cut(s) 407, 530
BstACI GRCGYC 1 cut(s) 353
BstC8I GCNNGC 1 cut(s) 570
BstDEI CTNAG 1 cut(s) 110
BstH2I RGCGCY 1 cut(s) 356
BstHHI GCGC 1 cut(s) 355
BstKTI GATC 2 cut(s) 271, 275
BstMBI GATC 2 cut(s) 268, 272
BstSCI CCNGG 2 cut(s) 260, 361
BstV1I GCAGC 1 cut(s) 520
Bsu15I ATCGAT 1 cut(s) 271
BsuTUI ATCGAT 1 cut(s) 271
Cac8I GCNNGC 1 cut(s) 570
CfoI GCGC 1 cut(s) 355
ClaI ATCGAT 1 cut(s) 271
CseI GACGC 1 cut(s) 561
DdeI CTNAG 1 cut(s) 110
DinI GGCGCC 1 cut(s) 354
DpnI GATC 2 cut(s) 270, 274
DpnII GATC 2 cut(s) 268, 272
DraIII CACNNNGTG 1 cut(s) 409
EgeI GGCGCC 1 cut(s) 354
EheI GGCGCC 1 cut(s) 354
FaiI YATR 6 cut(s) 10, 27, 159, 179, 234, 513
Fnu4HI GCNGC 1 cut(s) 509
Fsp4HI GCNGC 1 cut(s) 509
FspBI CTAG 2 cut(s) 251, 585
GlaI GCGC 1 cut(s) 354
GluI GCNGC 1 cut(s) 509
HaeII RGCGCY 1 cut(s) 356
HapII CCGG 2 cut(s) 262, 362
HgaI GACGC 1 cut(s) 561
HhaI GCGC 1 cut(s) 355
Hin1I GRCGYC 1 cut(s) 353
Hin6I GCGC 1 cut(s) 353
HinP1I GCGC 1 cut(s) 353
HinfI GANTC 3 cut(s) 154, 195, 467
HpaII CCGG 2 cut(s) 262, 362
HphI GGTGA 1 cut(s) 542
Hpy188I TCNGA 1 cut(s) 520
Hpy188III TCNNGA 1 cut(s) 538
HpyAV CCTTC 1 cut(s) 546
HpyCH4III ACNGT 2 cut(s) 407, 530
HpyCH4IV ACGT 1 cut(s) 165
HpyCH4V TGCA 5 cut(s) 4, 59, 403, 508, 568
HpyF3I CTNAG 1 cut(s) 110
HpySE526I ACGT 1 cut(s) 165
Hsp92I GRCGYC 1 cut(s) 353
HspAI GCGC 1 cut(s) 353
KasI GGCGCC 1 cut(s) 352
Kzo9I GATC 2 cut(s) 268, 272
LpnPI CCDG 2 cut(s) 275, 375
Lsp1109I GCAGC 1 cut(s) 520
LweI GCATC 1 cut(s) 349
MaeI CTAG 2 cut(s) 251, 585
MaeII ACGT 1 cut(s) 165
MaeIII GTNAC 3 cut(s) 116, 300, 325
MalI GATC 2 cut(s) 270, 274
MboI GATC 2 cut(s) 268, 272
MfeI CAATTG 1 cut(s) 296
MluCI AATT 7 cut(s) 45, 171, 228, 296, 316, 345, 563
Mly113I GGCGCC 1 cut(s) 353
MlyI GAGTC 3 cut(s) 163, 204, 476
MmeI TCCRAC 1 cut(s) 543
MnlI CCTC 3 cut(s) 82, 534, 591
MseI TTAA 9 cut(s) 44, 68, 104, 143, 191, 201, 222, 255, 315
MspI CCGG 2 cut(s) 262, 362
MspR9I CCNGG 2 cut(s) 262, 363
MunI CAATTG 1 cut(s) 296
NarI GGCGCC 1 cut(s) 353
NciI CCSGG 2 cut(s) 262, 363
NdeII GATC 2 cut(s) 268, 272
NlaIV GGNNCC 2 cut(s) 354, 444
NmeAIII GCCGAG 1 cut(s) 490
NmuCI GTSAC 2 cut(s) 300, 325
PcsI WCGNNNNNNNCGW 1 cut(s) 534
PkrI GCNGC 1 cut(s) 510
PleI GAGTC 3 cut(s) 162, 203, 475
PluTI GGCGCC 1 cut(s) 356
PpsI GAGTC 3 cut(s) 162, 203, 475
PspN4I GGNNCC 2 cut(s) 354, 444
SaqAI TTAA 9 cut(s) 44, 68, 104, 143, 191, 201, 222, 255, 315
SatI GCNGC 1 cut(s) 509
Sau3AI GATC 2 cut(s) 268, 272
SchI GAGTC 3 cut(s) 163, 204, 476
ScrFI CCNGG 2 cut(s) 262, 363
SetI ASST 4 cut(s) 74, 168, 448, 492
SfaNI GCATC 1 cut(s) 349
SfoI GGCGCC 1 cut(s) 354
Sse9I AATT 7 cut(s) 45, 171, 228, 296, 316, 345, 563
SspDI GGCGCC 1 cut(s) 352
SspMI CTAG 2 cut(s) 251, 585
StyD4I CCNGG 2 cut(s) 260, 361
TaaI ACNGT 2 cut(s) 407, 530
TaiI ACGT 1 cut(s) 168
TaqI TCGA 2 cut(s) 271, 537
TasI AATT 7 cut(s) 45, 171, 228, 296, 316, 345, 563
Tru1I TTAA 9 cut(s) 44, 68, 104, 143, 191, 201, 222, 255, 315
Tru9I TTAA 9 cut(s) 44, 68, 104, 143, 191, 201, 222, 255, 315
TseFI GTSAC 2 cut(s) 300, 325
TseI GCWGC 1 cut(s) 508
Tsp45I GTSAC 2 cut(s) 300, 325
TspDTI ATGAA 3 cut(s) 5, 14, 442
XapI RAATTY 2 cut(s) 171, 345
XspI CTAG 2 cut(s) 251, 585
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.