Rroxscaffold_3G00231480

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000437
Physical Location & Seq
Forward (+)
16742357 .. 16742512
156 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00231480.1

Sequence Viewer

Length: 156 bp
ATGAACGAAGCATCTTCTTCATATCAGCCGATCACTCTTAGAAGTGGAAGGGTATTGGGTGAGGATACTAGAGGAAGACCAAGAAGGAGGATCCGAAGGCCATTAGTGACCGGGAGTGCTCCACCTCGAGTTCTTGATCAGAGAGAGTACCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

51

Amino Acids

5.87

Weight (kDa)

11.58

Isoelectric Point (pI)

73.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000437)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G06105
fragaria_vesca FvH4_1g09709 FvH4_4g02101 FvH4_4g08975 FvH4_6g23372 FvH4_6g39851 FvH4_c1g00300
malus_domestica MD01G1176100.v1.1 MD09G1284900.v1.1 MD15G1306600.v1.1
prunus_persica Prupe.1G227700_v2.0.a1
pyrus_communis pycom01g00630 pycom01g01020 pycom01g01690 pycom01g01760 pycom01g04190 pycom01g04400 pycom02g18130 pycom03g10160 pycom05g06370 pycom05g08930 pycom06g05590 pycom10g06320 pycom11g14330 pycom11g15320 pycom11g16240 pycom12416g00050 pycom12420g00010 pycom12420g00120 pycom12426g00180 pycom12426g00710 pycom12531g00010 pycom1256g00020 pycom1256g00050 pycom1341g00030 pycom1353g00030 pycom13g23070 pycom13g23210 pycom13g26260 pycom13g26370 pycom13g26470 pycom13g26980 pycom14g08550 pycom14g08850 pycom1534g00040 pycom15g28760 pycom15g31230 pycom1604g00040 pycom16g21900 pycom16g26030 pycom1739g00020 pycom1739g00050 pycom17g12970 pycom17g17960 pycom17g18300 pycom17g18650 pycom2172g00020 pycom2438g00020 pycom436g00370 pycom436g00390 pycom576g00050 pycom76g00020
rosa_chinensis RchiOBHm_Chr1g0320811 RchiOBHm_Chr2g0135321 RchiOBHm_Chr3g0485721 RchiOBHm_Chr7g0236571
rosa_multiflora Rmu_sc0000185.1_g000007 Rmu_sc0002094.1_g000030 Rmu_sc0002764.1_g000007 Rmu_sc0002809.1_g000014 Rmu_sc0003005.1_g000007 Rmu_sc0003798.1_g000005 Rmu_sc0004646.1_g000027 Rmu_sc0004665.1_g000009 Rmu_sc0004818.1_g000001 Rmu_sc0004988.1_g000031 Rmu_sc0006373.1_g000007 Rmu_sc0007142.1_g000015 Rmu_sc0009930.1_g000001 Rmu_sc0011451.1_g000001 Rmu_sc0020424.1_g000001 Rmu_sc0036944.1_g000001 Rmu_ssc0000062.1_g000010
rosa_roxburghii Rroxscaffold_2G00123930 Rroxscaffold_3G00231480 Rroxscaffold_6G00413880
rosa_rugosa Rorug04G0084800
rosa_samantha Rh3BG150500 Rh6DG232400
rosa_wichuraiana Rw2G018400 Rw3G027860 Rw4G021220 Rw6G020670 Rw6G037970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 85, 98
AfaI GTAC 1 cut(s) 149
Alw21I GWGCWC 1 cut(s) 121
AlwI GGATC 2 cut(s) 85, 98
Ama87I CYCGRG 1 cut(s) 126
AoxI GGCC 1 cut(s) 98
AsuC2I CCSGG 1 cut(s) 112
AsuHPI GGTGA 1 cut(s) 71
AvaI CYCGRG 1 cut(s) 126
BamHI GGATCC 1 cut(s) 90
BbsI GAAGAC 1 cut(s) 82
Bbv12I GWGCWC 1 cut(s) 121
BciVI GTATCC 1 cut(s) 58
BclI TGATCA 1 cut(s) 136
BcnI CCSGG 1 cut(s) 112
BfaI CTAG 1 cut(s) 69
BfuI GTATCC 1 cut(s) 58
Bme1390I CCNGG 1 cut(s) 112
BmeT110I CYCGRG 1 cut(s) 126
BmiI GGNNCC 1 cut(s) 92
BmrFI CCNGG 1 cut(s) 112
BmsI GCATC 1 cut(s) 20
BpiI GAAGAC 1 cut(s) 82
BplI GAGNNNNNCTC 1 cut(s) 135
BpuMI CCSGG 1 cut(s) 112
BshFI GGCC 1 cut(s) 100
BsiHKAI GWGCWC 1 cut(s) 121
BsiHKCI CYCGRG 1 cut(s) 126
BsiSI CCGG 1 cut(s) 111
BsnI GGCC 1 cut(s) 100
BsoBI CYCGRG 1 cut(s) 126
Bsp1286I GDGCHC 1 cut(s) 121
Bsp143I GATC 3 cut(s) 30, 90, 136
BspANI GGCC 1 cut(s) 100
BspLI GGNNCC 1 cut(s) 92
BspPI GGATC 2 cut(s) 85, 98
BssMI GATC 3 cut(s) 30, 90, 136
BstDEI CTNAG 1 cut(s) 38
BstKTI GATC 3 cut(s) 33, 93, 139
BstMBI GATC 3 cut(s) 30, 90, 136
BstSCI CCNGG 1 cut(s) 110
BstV2I GAAGAC 1 cut(s) 82
BstX2I RGATCY 1 cut(s) 90
BstYI RGATCY 1 cut(s) 90
BsuI GTATCC 1 cut(s) 58
BsuRI GGCC 1 cut(s) 100
Csp6I GTAC 1 cut(s) 148
CviJI RGCY 2 cut(s) 28, 100
CviKI_1 RGCY 2 cut(s) 28, 100
CviQI GTAC 1 cut(s) 148
DdeI CTNAG 1 cut(s) 38
DpnI GATC 3 cut(s) 32, 92, 138
DpnII GATC 3 cut(s) 30, 90, 136
Eco88I CYCGRG 1 cut(s) 126
FaiI YATR 1 cut(s) 22
FbaI TGATCA 1 cut(s) 136
FspBI CTAG 1 cut(s) 69
HaeIII GGCC 1 cut(s) 100
HapII CCGG 1 cut(s) 111
HpaII CCGG 1 cut(s) 111
HphI GGTGA 1 cut(s) 71
Hpy188I TCNGA 2 cut(s) 95, 141
Hpy188III TCNNGA 1 cut(s) 134
HpyAV CCTTC 3 cut(s) 42, 78, 90
HpyF3I CTNAG 1 cut(s) 38
Ksp22I TGATCA 1 cut(s) 136
Kzo9I GATC 3 cut(s) 30, 90, 136
LmnI GCTCC 1 cut(s) 124
LpnPI CCDG 1 cut(s) 124
LweI GCATC 1 cut(s) 20
MaeI CTAG 1 cut(s) 69
MaeIII GTNAC 1 cut(s) 106
MalI GATC 3 cut(s) 32, 92, 138
MboI GATC 3 cut(s) 30, 90, 136
MboII GAAGA 3 cut(s) 6, 9, 87
MflI RGATCY 1 cut(s) 90
MhlI GDGCHC 1 cut(s) 121
MnlI CCTC 4 cut(s) 55, 65, 81, 135
MspI CCGG 1 cut(s) 111
MspR9I CCNGG 1 cut(s) 112
NciI CCSGG 1 cut(s) 112
NdeII GATC 3 cut(s) 30, 90, 136
NlaIV GGNNCC 1 cut(s) 92
NmuCI GTSAC 1 cut(s) 106
PaeR7I CTCGAG 1 cut(s) 126
PspN4I GGNNCC 1 cut(s) 92
PspXI VCTCGAGB 1 cut(s) 126
PsuI RGATCY 1 cut(s) 90
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
Sau3AI GATC 3 cut(s) 30, 90, 136
ScrFI CCNGG 1 cut(s) 112
SduI GDGCHC 1 cut(s) 121
SetI ASST 2 cut(s) 127, 153
SfaNI GCATC 1 cut(s) 20
Sfr274I CTCGAG 1 cut(s) 126
SgeI CNNG 7 cut(s) 81, 93, 123, 124, 138, 140, 146
SlaI CTCGAG 1 cut(s) 126
SmlI CTYRAG 1 cut(s) 126
SmoI CTYRAG 1 cut(s) 126
SspMI CTAG 1 cut(s) 69
StyD4I CCNGG 1 cut(s) 110
TaqI TCGA 1 cut(s) 127
TseFI GTSAC 1 cut(s) 106
Tsp45I GTSAC 1 cut(s) 106
TspDTI ATGAA 2 cut(s) 9, 17
XhoI CTCGAG 1 cut(s) 126
XspI CTAG 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.