Prupe.1G227700_v2.0.a1

strictosidine synthase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000437
Physical Location & Seq
Forward (+)
24099181 .. 24101983
2803 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G227700.1

Sequence Viewer

Length: 396 bp
ATGAAGGCGGATCTGGGGACACCGGGGATGAGATATGTGGTTAAGATGATCGGGAATACGTCGGAGAGAGAGAGGCAAAGAAAGAGAGAGTGGGGCAATTTACATTTTTGGTCACTAGGATTAGGGTTGGGATCAAATTCGCAGCAGAGAGATATTAGGAGCAAGGTGAGAGACGTCTATGAATTGAGCCATAATGATGACATGGCAAGGAAAATTGCAGCCCTCAACAAGAAGATGGATCCTATGATGTCCAAGAACGTCACTCCTAAGCCGGTTGAGGTTTGTTCAATTTATAATGGTTTTGGTCATAATTTTGATTCATGTCCTTCTAGTAGTGAATTTTCTGGATATGTGAAAGAACAACAAATTACAAGATGCATTTTAGCCGTCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 RVT_1 Retrotrans_gag rve

Protein Analysis

132

Amino Acids

14.93

Weight (kDa)

9.4

Isoelectric Point (pI)

39.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000437)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G06105
fragaria_vesca FvH4_1g09709 FvH4_4g02101 FvH4_4g08975 FvH4_6g23372 FvH4_6g39851 FvH4_c1g00300
malus_domestica MD01G1176100.v1.1 MD09G1284900.v1.1 MD15G1306600.v1.1
prunus_persica Prupe.1G227700_v2.0.a1
pyrus_communis pycom01g00630 pycom01g01020 pycom01g01690 pycom01g01760 pycom01g04190 pycom01g04400 pycom02g18130 pycom03g10160 pycom05g06370 pycom05g08930 pycom06g05590 pycom10g06320 pycom11g14330 pycom11g15320 pycom11g16240 pycom12416g00050 pycom12420g00010 pycom12420g00120 pycom12426g00180 pycom12426g00710 pycom12531g00010 pycom1256g00020 pycom1256g00050 pycom1341g00030 pycom1353g00030 pycom13g23070 pycom13g23210 pycom13g26260 pycom13g26370 pycom13g26470 pycom13g26980 pycom14g08550 pycom14g08850 pycom1534g00040 pycom15g28760 pycom15g31230 pycom1604g00040 pycom16g21900 pycom16g26030 pycom1739g00020 pycom1739g00050 pycom17g12970 pycom17g17960 pycom17g18300 pycom17g18650 pycom2172g00020 pycom2438g00020 pycom436g00370 pycom436g00390 pycom576g00050 pycom76g00020
rosa_chinensis RchiOBHm_Chr1g0320811 RchiOBHm_Chr2g0135321 RchiOBHm_Chr3g0485721 RchiOBHm_Chr7g0236571
rosa_multiflora Rmu_sc0000185.1_g000007 Rmu_sc0002094.1_g000030 Rmu_sc0002764.1_g000007 Rmu_sc0002809.1_g000014 Rmu_sc0003005.1_g000007 Rmu_sc0003798.1_g000005 Rmu_sc0004646.1_g000027 Rmu_sc0004665.1_g000009 Rmu_sc0004818.1_g000001 Rmu_sc0004988.1_g000031 Rmu_sc0006373.1_g000007 Rmu_sc0007142.1_g000015 Rmu_sc0009930.1_g000001 Rmu_sc0011451.1_g000001 Rmu_sc0020424.1_g000001 Rmu_sc0036944.1_g000001 Rmu_ssc0000062.1_g000010
rosa_roxburghii Rroxscaffold_2G00123930 Rroxscaffold_3G00231480 Rroxscaffold_6G00413880
rosa_rugosa Rorug04G0084800
rosa_samantha Rh3BG150500 Rh6DG232400
rosa_wichuraiana Rw2G018400 Rw3G027860 Rw4G021220 Rw6G020670 Rw6G037970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 294
AatII GACGTC 1 cut(s) 177
AciI CCGC 1 cut(s) 8
AclWI GGATC 4 cut(s) 18, 139, 233, 246
AcsI RAATTY 2 cut(s) 136, 338
AcyI GRCGYC 1 cut(s) 174
AgsI TTSAA 1 cut(s) 288
Alw26I GTCTC 1 cut(s) 165
AlwI GGATC 4 cut(s) 18, 139, 233, 246
ApeKI GCWGC 2 cut(s) 142, 218
ApoI RAATTY 2 cut(s) 136, 338
AsuC2I CCSGG 1 cut(s) 24
AsuHPI GGTGA 1 cut(s) 178
BamHI GGATCC 1 cut(s) 238
BbvI GCAGC 2 cut(s) 154, 230
BccI CCATC 1 cut(s) 229
BceAI ACGGC 1 cut(s) 371
BcnI CCSGG 1 cut(s) 24
BcoDI GTCTC 1 cut(s) 165
BfaI CTAG 2 cut(s) 116, 330
BisI GCNGC 2 cut(s) 143, 219
BlsI GCNGC 2 cut(s) 144, 220
Bme1390I CCNGG 1 cut(s) 24
BmiI GGNNCC 1 cut(s) 240
BmrFI CCNGG 1 cut(s) 24
BmsI GCATC 1 cut(s) 365
Bpu10I CCTNAGC 1 cut(s) 267
BpuMI CCSGG 1 cut(s) 24
BsaHI GRCGYC 1 cut(s) 174
BsaJI CCNNGG 1 cut(s) 23
Bse118I RCCGGY 1 cut(s) 271
BseDI CCNNGG 1 cut(s) 23
BseGI GGATG 1 cut(s) 33
BseXI GCAGC 2 cut(s) 154, 230
BsiSI CCGG 2 cut(s) 23, 272
BslFI GGGAC 1 cut(s) 31
BsmAI GTCTC 1 cut(s) 165
BsmBI CGTCTC 1 cut(s) 165
BsmFI GGGAC 1 cut(s) 31
Bsp143I GATC 4 cut(s) 10, 48, 131, 238
BspACI CCGC 1 cut(s) 8
BspLI GGNNCC 1 cut(s) 240
BspPI GGATC 4 cut(s) 18, 139, 233, 246
BsrFI RCCGGY 1 cut(s) 271
BssAI RCCGGY 1 cut(s) 271
BssECI CCNNGG 1 cut(s) 23
BssMI GATC 4 cut(s) 10, 48, 131, 238
BssNI GRCGYC 1 cut(s) 174
BstACI GRCGYC 1 cut(s) 174
BstDEI CTNAG 1 cut(s) 267
BstF5I GGATG 1 cut(s) 33
BstKTI GATC 4 cut(s) 13, 51, 134, 241
BstMAI GTCTC 1 cut(s) 165
BstMBI GATC 4 cut(s) 10, 48, 131, 238
BstSCI CCNGG 1 cut(s) 22
BstV1I GCAGC 2 cut(s) 154, 230
BstX2I RGATCY 2 cut(s) 10, 238
BstYI RGATCY 2 cut(s) 10, 238
BtsCI GGATG 1 cut(s) 33
Cfr10I RCCGGY 1 cut(s) 271
CviAII CATG 3 cut(s) 202, 321, 391
CviJI RGCY 4 cut(s) 189, 221, 271, 386
CviKI_1 RGCY 4 cut(s) 189, 221, 271, 386
DdeI CTNAG 1 cut(s) 267
DpnI GATC 4 cut(s) 12, 50, 133, 240
DpnII GATC 4 cut(s) 10, 48, 131, 238
EciI GGCGGA 1 cut(s) 23
EcoT22I ATGCAT 1 cut(s) 380
Esp3I CGTCTC 1 cut(s) 165
FaeI CATG 3 cut(s) 205, 324, 394
FaqI GGGAC 1 cut(s) 31
FatI CATG 3 cut(s) 201, 320, 390
Fnu4HI GCNGC 2 cut(s) 143, 219
FokI GGATG 1 cut(s) 40
Fsp4HI GCNGC 2 cut(s) 143, 219
FspBI CTAG 2 cut(s) 116, 330
GluI GCNGC 2 cut(s) 143, 219
HapII CCGG 2 cut(s) 23, 272
Hin1I GRCGYC 1 cut(s) 174
Hin1II CATG 3 cut(s) 205, 324, 394
HinfI GANTC 1 cut(s) 317
HpaII CCGG 2 cut(s) 23, 272
HphI GGTGA 1 cut(s) 178
Hpy188I TCNGA 1 cut(s) 64
Hpy188III TCNNGA 2 cut(s) 52, 345
Hpy99I CGWCG 1 cut(s) 64
HpyAV CCTTC 1 cut(s) 336
HpyCH4IV ACGT 3 cut(s) 59, 174, 258
HpyCH4V TGCA 2 cut(s) 218, 378
HpyF3I CTNAG 1 cut(s) 267
HpySE526I ACGT 3 cut(s) 59, 174, 258
Hsp92I GRCGYC 1 cut(s) 174
Hsp92II CATG 3 cut(s) 205, 324, 394
Kzo9I GATC 4 cut(s) 10, 48, 131, 238
LmnI GCTCC 1 cut(s) 159
LpnPI CCDG 3 cut(s) 36, 285, 330
Lsp1109I GCAGC 2 cut(s) 154, 230
LweI GCATC 1 cut(s) 365
MaeI CTAG 2 cut(s) 116, 330
MaeII ACGT 3 cut(s) 59, 174, 258
MaeIII GTNAC 2 cut(s) 111, 259
MalI GATC 4 cut(s) 12, 50, 133, 240
MboI GATC 4 cut(s) 10, 48, 131, 238
MboII GAAGA 1 cut(s) 244
MflI RGATCY 2 cut(s) 10, 238
MluCI AATT 8 cut(s) 97, 136, 182, 213, 288, 310, 338, 366
MmeI TCCRAC 1 cut(s) 42
MnlI CCTC 3 cut(s) 66, 233, 271
Mph1103I ATGCAT 1 cut(s) 380
MseI TTAA 1 cut(s) 42
MslI CAYNNNNRTG 1 cut(s) 195
MspI CCGG 2 cut(s) 23, 272
MspR9I CCNGG 1 cut(s) 24
NciI CCSGG 1 cut(s) 24
NdeII GATC 4 cut(s) 10, 48, 131, 238
NlaIII CATG 3 cut(s) 205, 324, 394
NlaIV GGNNCC 1 cut(s) 240
NmuCI GTSAC 2 cut(s) 111, 259
NsiI ATGCAT 1 cut(s) 380
PfeI GAWTC 1 cut(s) 317
PkrI GCNGC 2 cut(s) 144, 220
PsiI TTATAA 1 cut(s) 294
PspN4I GGNNCC 1 cut(s) 240
PsuI RGATCY 2 cut(s) 10, 238
RseI CAYNNNNRTG 1 cut(s) 195
SaqAI TTAA 1 cut(s) 42
SatI GCNGC 2 cut(s) 143, 219
Sau3AI GATC 4 cut(s) 10, 48, 131, 238
ScrFI CCNGG 1 cut(s) 24
SetI ASST 5 cut(s) 62, 168, 177, 261, 282
SfaNI GCATC 1 cut(s) 365
SmiMI CAYNNNNRTG 1 cut(s) 195
Sse9I AATT 8 cut(s) 97, 136, 182, 213, 288, 310, 338, 366
SsiI CCGC 1 cut(s) 8
SspMI CTAG 2 cut(s) 116, 330
StyD4I CCNGG 1 cut(s) 22
TaiI ACGT 3 cut(s) 62, 177, 261
TasI AATT 8 cut(s) 97, 136, 182, 213, 288, 310, 338, 366
TfiI GAWTC 1 cut(s) 317
Tru1I TTAA 1 cut(s) 42
Tru9I TTAA 1 cut(s) 42
TseFI GTSAC 2 cut(s) 111, 259
TseI GCWGC 2 cut(s) 142, 218
Tsp45I GTSAC 2 cut(s) 111, 259
TspDTI ATGAA 3 cut(s) 17, 195, 309
XapI RAATTY 2 cut(s) 136, 338
XspI CTAG 2 cut(s) 116, 330
ZraI GACGTC 1 cut(s) 175
Zsp2I ATGCAT 1 cut(s) 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.