pycom1739g00020

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00001739
OG0000437
Physical Location & Seq
Reverse (-)
97790 .. 98167
378 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom1739g00020.1

Sequence Viewer

Length: 378 bp
ATGGCCGTGGACACCCAGACACTCAAGGAGCTTTCGGCCTCGGGATTGGATAATGCCGCACCCTTGTGTATCCAATATCCCCCACTTGCCGAAGGGAAGACCGATGAGTTCGAGTTGAAGTCAAGTTTGCTTCACCATATTCCGAAGTACCATGGGTTGTCCATGGAGGATCCGAACAAGCACCTGAAGGAATTCGAGGTGGTATGTTCAAGCATGACTCCCATCAATGTCGATGGAAGTATATTGAAGATGAAGGCTTTTCCATTCTCTTTAATGGACAAAGCCAAGGATTGGTTGTACGACTTAGCTCCCGGAACCGTCACATCATGGGAGAGCATGAAGAGGGCATATCTGGAGAAGTTTTTCCCAACTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 Retrotrans_gag rve

Protein Analysis

126

Amino Acids

14.04

Weight (kDa)

5.5

Isoelectric Point (pI)

31.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000437)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G06105
fragaria_vesca FvH4_1g09709 FvH4_4g02101 FvH4_4g08975 FvH4_6g23372 FvH4_6g39851 FvH4_c1g00300
malus_domestica MD01G1176100.v1.1 MD09G1284900.v1.1 MD15G1306600.v1.1
prunus_persica Prupe.1G227700_v2.0.a1
pyrus_communis pycom01g00630 pycom01g01020 pycom01g01690 pycom01g01760 pycom01g04190 pycom01g04400 pycom02g18130 pycom03g10160 pycom05g06370 pycom05g08930 pycom06g05590 pycom10g06320 pycom11g14330 pycom11g15320 pycom11g16240 pycom12416g00050 pycom12420g00010 pycom12420g00120 pycom12426g00180 pycom12426g00710 pycom12531g00010 pycom1256g00020 pycom1256g00050 pycom1341g00030 pycom1353g00030 pycom13g23070 pycom13g23210 pycom13g26260 pycom13g26370 pycom13g26470 pycom13g26980 pycom14g08550 pycom14g08850 pycom1534g00040 pycom15g28760 pycom15g31230 pycom1604g00040 pycom16g21900 pycom16g26030 pycom1739g00020 pycom1739g00050 pycom17g12970 pycom17g17960 pycom17g18300 pycom17g18650 pycom2172g00020 pycom2438g00020 pycom436g00370 pycom436g00390 pycom576g00050 pycom76g00020
rosa_chinensis RchiOBHm_Chr1g0320811 RchiOBHm_Chr2g0135321 RchiOBHm_Chr3g0485721 RchiOBHm_Chr7g0236571
rosa_multiflora Rmu_sc0000185.1_g000007 Rmu_sc0002094.1_g000030 Rmu_sc0002764.1_g000007 Rmu_sc0002809.1_g000014 Rmu_sc0003005.1_g000007 Rmu_sc0003798.1_g000005 Rmu_sc0004646.1_g000027 Rmu_sc0004665.1_g000009 Rmu_sc0004818.1_g000001 Rmu_sc0004988.1_g000031 Rmu_sc0006373.1_g000007 Rmu_sc0007142.1_g000015 Rmu_sc0009930.1_g000001 Rmu_sc0011451.1_g000001 Rmu_sc0020424.1_g000001 Rmu_sc0036944.1_g000001 Rmu_ssc0000062.1_g000010
rosa_roxburghii Rroxscaffold_2G00123930 Rroxscaffold_3G00231480 Rroxscaffold_6G00413880
rosa_rugosa Rorug04G0084800
rosa_samantha Rh3BG150500 Rh6DG232400
rosa_wichuraiana Rw2G018400 Rw3G027860 Rw4G021220 Rw6G020670 Rw6G037970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 291
AciI CCGC 1 cut(s) 57
AclWI GGATC 2 cut(s) 164, 177
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 191
AcuI CTGAAG 1 cut(s) 206
AfaI GTAC 2 cut(s) 149, 299
AfiI CCNNNNNNNGG 1 cut(s) 291
AgsI TTSAA 3 cut(s) 118, 210, 247
AleI CACNNNNGTG 1 cut(s) 64
AluBI AGCT 2 cut(s) 31, 308
AluI AGCT 2 cut(s) 31, 308
AlwI GGATC 2 cut(s) 164, 177
Ama87I CYCGRG 1 cut(s) 40
AoxI GGCC 2 cut(s) 3, 36
ApoI RAATTY 1 cut(s) 191
Asp700I GAANNNNTTC 2 cut(s) 191, 362
AsuC2I CCSGG 1 cut(s) 312
AsuHPI GGTGA 1 cut(s) 125
AvaI CYCGRG 1 cut(s) 40
BamHI GGATCC 1 cut(s) 169
BbsI GAAGAC 1 cut(s) 104
BccI CCATC 2 cut(s) 227, 230
BciVI GTATCC 1 cut(s) 80
BcnI CCSGG 1 cut(s) 312
BfuI GTATCC 1 cut(s) 80
BisI GCNGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 58
Bme1390I CCNGG 1 cut(s) 312
BmeT110I CYCGRG 1 cut(s) 40
BmiI GGNNCC 2 cut(s) 171, 316
BmrFI CCNGG 1 cut(s) 312
BpiI GAAGAC 1 cut(s) 104
BpmI CTGGAG 1 cut(s) 374
BpuEI CTTGAG 1 cut(s) 8
BpuMI CCSGG 1 cut(s) 312
BsaJI CCNNGG 5 cut(s) 6, 39, 151, 162, 285
Bsc4I CCNNNNNNNGG 1 cut(s) 291
BseDI CCNNGG 5 cut(s) 6, 39, 151, 162, 285
BseLI CCNNNNNNNGG 1 cut(s) 291
BshFI GGCC 2 cut(s) 5, 38
BsiHKCI CYCGRG 1 cut(s) 40
BsiSI CCGG 1 cut(s) 312
BslI CCNNNNNNNGG 1 cut(s) 291
BsnI GGCC 2 cut(s) 5, 38
BsoBI CYCGRG 1 cut(s) 40
Bsp143I GATC 1 cut(s) 169
Bsp19I CCATGG 2 cut(s) 151, 162
BspACI CCGC 1 cut(s) 57
BspANI GGCC 2 cut(s) 5, 38
BspLI GGNNCC 2 cut(s) 171, 316
BspPI GGATC 2 cut(s) 164, 177
BssECI CCNNGG 5 cut(s) 6, 39, 151, 162, 285
BssMI GATC 1 cut(s) 169
BssT1I CCWWGG 3 cut(s) 151, 162, 285
Bst4CI ACNGT 1 cut(s) 319
Bst6I CTCTTC 1 cut(s) 335
BstDEI CTNAG 1 cut(s) 304
BstDSI CCRYGG 3 cut(s) 6, 151, 162
BstKTI GATC 1 cut(s) 172
BstMBI GATC 1 cut(s) 169
BstSCI CCNGG 1 cut(s) 310
BstV2I GAAGAC 1 cut(s) 104
BstX2I RGATCY 1 cut(s) 169
BstYI RGATCY 1 cut(s) 169
BsuI GTATCC 1 cut(s) 80
BsuRI GGCC 2 cut(s) 5, 38
BtgI CCRYGG 3 cut(s) 6, 151, 162
Csp6I GTAC 2 cut(s) 148, 298
CviAII CATG 5 cut(s) 152, 163, 214, 327, 337
CviJI RGCY 6 cut(s) 5, 31, 38, 257, 284, 308
CviKI_1 RGCY 6 cut(s) 5, 31, 38, 257, 284, 308
CviQI GTAC 2 cut(s) 148, 298
DdeI CTNAG 1 cut(s) 304
DpnI GATC 1 cut(s) 171
DpnII GATC 1 cut(s) 169
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 335
EarI CTCTTC 1 cut(s) 335
Eco130I CCWWGG 3 cut(s) 151, 162, 285
Eco57I CTGAAG 1 cut(s) 206
Eco88I CYCGRG 1 cut(s) 40
EcoRI GAATTC 1 cut(s) 191
EcoT14I CCWWGG 3 cut(s) 151, 162, 285
ErhI CCWWGG 3 cut(s) 151, 162, 285
FaeI CATG 5 cut(s) 155, 166, 217, 330, 340
FaiI YATR 9 cut(s) 138, 153, 164, 205, 215, 242, 328, 338, 349
FatI CATG 5 cut(s) 151, 162, 213, 326, 336
Fnu4HI GCNGC 1 cut(s) 57
Fsp4HI GCNGC 1 cut(s) 57
GluI GCNGC 1 cut(s) 57
GsuI CTGGAG 1 cut(s) 374
HaeIII GGCC 2 cut(s) 5, 38
HapII CCGG 1 cut(s) 312
Hin1II CATG 5 cut(s) 155, 166, 217, 330, 340
HinfI GANTC 1 cut(s) 217
HpaII CCGG 1 cut(s) 312
HphI GGTGA 1 cut(s) 125
Hpy166II GTNNAC 1 cut(s) 10
Hpy188I TCNGA 2 cut(s) 144, 174
Hpy188III TCNNGA 3 cut(s) 42, 353, 375
Hpy8I GTNNAC 1 cut(s) 10
HpyAV CCTTC 3 cut(s) 86, 181, 247
HpyCH4III ACNGT 1 cut(s) 319
HpyF3I CTNAG 1 cut(s) 304
Hsp92II CATG 5 cut(s) 155, 166, 217, 330, 340
Kzo9I GATC 1 cut(s) 169
LmnI GCTCC 2 cut(s) 28, 313
LpnPI CCDG 4 cut(s) 29, 197, 325, 338
MaeIII GTNAC 1 cut(s) 319
MalI GATC 1 cut(s) 171
MboI GATC 1 cut(s) 169
MboII GAAGA 3 cut(s) 109, 259, 352
MflI RGATCY 1 cut(s) 169
MluCI AATT 1 cut(s) 191
MlyI GAGTC 1 cut(s) 211
MnlI CCTC 4 cut(s) 49, 160, 190, 336
MroXI GAANNNNTTC 2 cut(s) 191, 362
MseI TTAA 1 cut(s) 272
MslI CAYNNNNRTG 1 cut(s) 64
MspI CCGG 1 cut(s) 312
MspR9I CCNGG 1 cut(s) 312
NciI CCSGG 1 cut(s) 312
NcoI CCATGG 2 cut(s) 151, 162
NdeII GATC 1 cut(s) 169
NlaIII CATG 5 cut(s) 155, 166, 217, 330, 340
NlaIV GGNNCC 2 cut(s) 171, 316
NmuCI GTSAC 1 cut(s) 319
OliI CACNNNNGTG 1 cut(s) 64
PdmI GAANNNNTTC 2 cut(s) 191, 362
PflMI CCANNNNNTGG 1 cut(s) 291
PfoI TCCNGGA 1 cut(s) 310
PkrI GCNGC 1 cut(s) 58
PleI GAGTC 1 cut(s) 211
PpsI GAGTC 1 cut(s) 211
PspN4I GGNNCC 2 cut(s) 171, 316
PsuI RGATCY 1 cut(s) 169
RsaI GTAC 2 cut(s) 149, 299
RsaNI GTAC 2 cut(s) 148, 298
RseI CAYNNNNRTG 1 cut(s) 64
SaqAI TTAA 1 cut(s) 272
SatI GCNGC 1 cut(s) 57
Sau3AI GATC 1 cut(s) 169
SchI GAGTC 1 cut(s) 211
ScrFI CCNGG 1 cut(s) 312
SetI ASST 4 cut(s) 33, 186, 201, 310
SmiMI CAYNNNNRTG 1 cut(s) 64
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
Sse9I AATT 1 cut(s) 191
SsiI CCGC 1 cut(s) 57
StyD4I CCNGG 1 cut(s) 310
StyI CCWWGG 3 cut(s) 151, 162, 285
TaaI ACNGT 1 cut(s) 319
TaqI TCGA 3 cut(s) 111, 195, 231
TaqII GACCGA 1 cut(s) 116
TasI AATT 1 cut(s) 191
TauI GCSGC 1 cut(s) 59
Tru1I TTAA 1 cut(s) 272
Tru9I TTAA 1 cut(s) 272
TseFI GTSAC 1 cut(s) 319
Tsp45I GTSAC 1 cut(s) 319
TspDTI ATGAA 2 cut(s) 266, 353
Van91I CCANNNNNTGG 1 cut(s) 291
XapI RAATTY 1 cut(s) 191
XmnI GAANNNNTTC 2 cut(s) 191, 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.