pycom1534g00040

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00001534
OG0000437
Physical Location & Seq
Forward (+)
98071 .. 98594
524 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom1534g00040.2

Sequence Viewer

Length: 483 bp
ATGGCAGCAGATAATAGAACCATCAAGGAGCTTTCGGCCTCGGGTTTGGATAATGCATTGCCTCTTTGTATCCAATACCCCACGGCTGCAGAGGGGAAGACTGAGGAATTTGAACTCAAATCCAGTTTGTTACACCATATTCCGAAGTTCCATGGCTTGTCTATGGAAGACCCCAACAAACACTTGAAGGAGTTCGAGGTGGTTTGTTCGAGCATGACCCCCGTCAATGTGGATGGGAGTATATTGAAGATGAAGGCCTTTCCATTTTCACTTATGGACAAGGCCAAAGATTGGCTCTACGAACTAGCCCCGGGAACTGTGACTTCGTGGGAGAGTATGAAGCGTGCTTTCTTGGAGAAATTCTTCCCTACTTCGAGAGTGATTCTCCTACGGAAGAAAATTAGTGGTATTCAACAGAATCATGGTGAGACATTCCCGGCTTATTATGAGCGCTTCAAGGGCCTTGTAGCTTCATTTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotrans_gag

Protein Analysis

161

Amino Acids

18.1

Weight (kDa)

7.78

Isoelectric Point (pI)

34.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000437)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G06105
fragaria_vesca FvH4_1g09709 FvH4_4g02101 FvH4_4g08975 FvH4_6g23372 FvH4_6g39851 FvH4_c1g00300
malus_domestica MD01G1176100.v1.1 MD09G1284900.v1.1 MD15G1306600.v1.1
prunus_persica Prupe.1G227700_v2.0.a1
pyrus_communis pycom01g00630 pycom01g01020 pycom01g01690 pycom01g01760 pycom01g04190 pycom01g04400 pycom02g18130 pycom03g10160 pycom05g06370 pycom05g08930 pycom06g05590 pycom10g06320 pycom11g14330 pycom11g15320 pycom11g16240 pycom12416g00050 pycom12420g00010 pycom12420g00120 pycom12426g00180 pycom12426g00710 pycom12531g00010 pycom1256g00020 pycom1256g00050 pycom1341g00030 pycom1353g00030 pycom13g23070 pycom13g23210 pycom13g26260 pycom13g26370 pycom13g26470 pycom13g26980 pycom14g08550 pycom14g08850 pycom1534g00040 pycom15g28760 pycom15g31230 pycom1604g00040 pycom16g21900 pycom16g26030 pycom1739g00020 pycom1739g00050 pycom17g12970 pycom17g17960 pycom17g18300 pycom17g18650 pycom2172g00020 pycom2438g00020 pycom436g00370 pycom436g00390 pycom576g00050 pycom76g00020
rosa_chinensis RchiOBHm_Chr1g0320811 RchiOBHm_Chr2g0135321 RchiOBHm_Chr3g0485721 RchiOBHm_Chr7g0236571
rosa_multiflora Rmu_sc0000185.1_g000007 Rmu_sc0002094.1_g000030 Rmu_sc0002764.1_g000007 Rmu_sc0002809.1_g000014 Rmu_sc0003005.1_g000007 Rmu_sc0003798.1_g000005 Rmu_sc0004646.1_g000027 Rmu_sc0004665.1_g000009 Rmu_sc0004818.1_g000001 Rmu_sc0004988.1_g000031 Rmu_sc0006373.1_g000007 Rmu_sc0007142.1_g000015 Rmu_sc0009930.1_g000001 Rmu_sc0011451.1_g000001 Rmu_sc0020424.1_g000001 Rmu_sc0036944.1_g000001 Rmu_ssc0000062.1_g000010
rosa_roxburghii Rroxscaffold_2G00123930 Rroxscaffold_3G00231480 Rroxscaffold_6G00413880
rosa_rugosa Rorug04G0084800
rosa_samantha Rh3BG150500 Rh6DG232400
rosa_wichuraiana Rw2G018400 Rw3G027860 Rw4G021220 Rw6G020670 Rw6G037970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 291
AcsI RAATTY 2 cut(s) 107, 359
AfeI AGCGCT 1 cut(s) 452
AfiI CCNNNNNNNGG 1 cut(s) 291
AgsI TTSAA 5 cut(s) 113, 187, 247, 413, 457
AluBI AGCT 2 cut(s) 31, 470
AluI AGCT 2 cut(s) 31, 470
Alw26I GTCTC 1 cut(s) 422
Ama87I CYCGRG 2 cut(s) 40, 310
Aor51HI AGCGCT 1 cut(s) 452
AoxI GGCC 4 cut(s) 36, 255, 282, 460
ApeKI GCWGC 2 cut(s) 5, 86
ApoI RAATTY 2 cut(s) 107, 359
Asp700I GAANNNNTTC 2 cut(s) 191, 362
AspLEI GCGC 1 cut(s) 453
AspS9I GGNCC 1 cut(s) 460
AsuC2I CCSGG 3 cut(s) 311, 312, 437
AsuHPI GGTGA 1 cut(s) 437
AvaI CYCGRG 2 cut(s) 40, 310
BbsI GAAGAC 2 cut(s) 104, 174
BbvI GCAGC 2 cut(s) 17, 73
BccI CCATC 2 cut(s) 29, 227
BceAI ACGGC 1 cut(s) 99
BciVI GTATCC 1 cut(s) 80
BcnI CCSGG 3 cut(s) 311, 312, 437
BcoDI GTCTC 1 cut(s) 422
BfaI CTAG 1 cut(s) 305
BfmI CTRYAG 1 cut(s) 87
BfoI RGCGCY 1 cut(s) 454
BfuI GTATCC 1 cut(s) 80
BisI GCNGC 2 cut(s) 6, 87
BlsI GCNGC 2 cut(s) 7, 88
Bme1390I CCNGG 3 cut(s) 311, 312, 437
BmeT110I CYCGRG 2 cut(s) 40, 310
BmgT120I GGNCC 1 cut(s) 460
BmrFI CCNGG 3 cut(s) 311, 312, 437
BoxI GACNNNNGTC 1 cut(s) 221
BpiI GAAGAC 2 cut(s) 104, 174
BplI GAGNNNNNCTC 2 cut(s) 369, 401
BpuMI CCSGG 3 cut(s) 311, 312, 437
BsaJI CCNNGG 5 cut(s) 39, 81, 151, 309, 310
Bsc4I CCNNNNNNNGG 1 cut(s) 291
Bse1I ACTGG 1 cut(s) 123
Bse3DI GCAATG 1 cut(s) 56
BseDI CCNNGG 5 cut(s) 39, 81, 151, 309, 310
BseGI GGATG 1 cut(s) 238
BseLI CCNNNNNNNGG 1 cut(s) 291
BseMI GCAATG 1 cut(s) 56
BseMII CTCAG 1 cut(s) 93
BseNI ACTGG 1 cut(s) 123
BseXI GCAGC 2 cut(s) 17, 73
BshFI GGCC 4 cut(s) 38, 257, 284, 462
BsiHKCI CYCGRG 2 cut(s) 40, 310
BsiSI CCGG 2 cut(s) 311, 437
BslI CCNNNNNNNGG 1 cut(s) 291
BsmAI GTCTC 1 cut(s) 422
BsnI GGCC 4 cut(s) 38, 257, 284, 462
BsoBI CYCGRG 2 cut(s) 40, 310
Bsp19I CCATGG 1 cut(s) 151
BspANI GGCC 4 cut(s) 38, 257, 284, 462
BspCNI CTCAG 1 cut(s) 94
BspMAI CTGCAG 1 cut(s) 91
BsrDI GCAATG 1 cut(s) 56
BsrI ACTGG 1 cut(s) 123
BssECI CCNNGG 5 cut(s) 39, 81, 151, 309, 310
BssT1I CCWWGG 1 cut(s) 151
Bst4CI ACNGT 1 cut(s) 319
BstC8I GCNNGC 1 cut(s) 345
BstDEI CTNAG 1 cut(s) 102
BstDSI CCRYGG 2 cut(s) 81, 151
BstF5I GGATG 1 cut(s) 238
BstH2I RGCGCY 1 cut(s) 454
BstHHI GCGC 1 cut(s) 453
BstMAI GTCTC 1 cut(s) 422
BstMWI GCNNNNNNNGC 1 cut(s) 459
BstPAI GACNNNNGTC 1 cut(s) 221
BstSCI CCNGG 3 cut(s) 309, 310, 435
BstSFI CTRYAG 1 cut(s) 87
BstV1I GCAGC 2 cut(s) 17, 73
BstV2I GAAGAC 2 cut(s) 104, 174
BsuI GTATCC 1 cut(s) 80
BsuRI GGCC 4 cut(s) 38, 257, 284, 462
BtgI CCRYGG 2 cut(s) 81, 151
BtsCI GGATG 1 cut(s) 238
Cac8I GCNNGC 1 cut(s) 345
CfoI GCGC 1 cut(s) 453
Cfr13I GGNCC 1 cut(s) 460
Cfr9I CCCGGG 1 cut(s) 310
CviAII CATG 3 cut(s) 152, 214, 422
DdeI CTNAG 1 cut(s) 102
Eco130I CCWWGG 1 cut(s) 151
Eco147I AGGCCT 1 cut(s) 257
Eco47III AGCGCT 1 cut(s) 452
Eco88I CYCGRG 2 cut(s) 40, 310
EcoO109I RGGNCCY 1 cut(s) 460
EcoT14I CCWWGG 1 cut(s) 151
EcoT22I ATGCAT 1 cut(s) 58
ErhI CCWWGG 1 cut(s) 151
FaeI CATG 3 cut(s) 155, 217, 425
FatI CATG 3 cut(s) 151, 213, 421
Fnu4HI GCNGC 2 cut(s) 6, 87
FokI GGATG 1 cut(s) 245
Fsp4HI GCNGC 2 cut(s) 6, 87
FspBI CTAG 1 cut(s) 305
GlaI GCGC 1 cut(s) 452
GluI GCNGC 2 cut(s) 6, 87
HaeII RGCGCY 1 cut(s) 454
HaeIII GGCC 4 cut(s) 38, 257, 284, 462
HapII CCGG 2 cut(s) 311, 437
HhaI GCGC 1 cut(s) 453
Hin1II CATG 3 cut(s) 155, 217, 425
Hin6I GCGC 1 cut(s) 451
HinP1I GCGC 1 cut(s) 451
HinfI GANTC 2 cut(s) 382, 418
HpaII CCGG 2 cut(s) 311, 437
HphI GGTGA 1 cut(s) 437
Hpy188I TCNGA 1 cut(s) 144
Hpy188III TCNNGA 1 cut(s) 375
HpyAV CCTTC 2 cut(s) 181, 247
HpyCH4III ACNGT 1 cut(s) 319
HpyCH4V TGCA 2 cut(s) 56, 89
HpyF10VI GCNNNNNNNGC 1 cut(s) 459
HpyF3I CTNAG 1 cut(s) 102
Hsp92II CATG 3 cut(s) 155, 217, 425
HspAI GCGC 1 cut(s) 451
LmnI GCTCC 1 cut(s) 28
LpnPI CCDG 3 cut(s) 136, 324, 450
Lsp1109I GCAGC 2 cut(s) 17, 73
MaeI CTAG 1 cut(s) 305
MaeIII GTNAC 2 cut(s) 129, 319
MboII GAAGA 5 cut(s) 109, 179, 259, 355, 406
MluCI AATT 3 cut(s) 107, 359, 399
MnlI CCTC 5 cut(s) 49, 72, 85, 97, 190
Mph1103I ATGCAT 1 cut(s) 58
MroXI GAANNNNTTC 2 cut(s) 191, 362
MslI CAYNNNNRTG 1 cut(s) 478
MspI CCGG 2 cut(s) 311, 437
MspR9I CCNGG 3 cut(s) 311, 312, 437
MwoI GCNNNNNNNGC 1 cut(s) 459
NciI CCSGG 3 cut(s) 311, 312, 437
NcoI CCATGG 1 cut(s) 151
NlaIII CATG 3 cut(s) 155, 217, 425
NmuCI GTSAC 1 cut(s) 319
NsiI ATGCAT 1 cut(s) 58
PceI AGGCCT 1 cut(s) 257
PdmI GAANNNNTTC 2 cut(s) 191, 362
PfeI GAWTC 2 cut(s) 382, 418
PflMI CCANNNNNTGG 1 cut(s) 291
PkrI GCNGC 2 cut(s) 7, 88
PshAI GACNNNNGTC 1 cut(s) 221
PspPI GGNCC 1 cut(s) 460
PstI CTGCAG 1 cut(s) 91
RseI CAYNNNNRTG 1 cut(s) 478
SatI GCNGC 2 cut(s) 6, 87
Sau96I GGNCC 1 cut(s) 460
ScrFI CCNGG 3 cut(s) 311, 312, 437
SetI ASST 3 cut(s) 33, 201, 472
SfcI CTRYAG 1 cut(s) 87
SmaI CCCGGG 1 cut(s) 312
SmiMI CAYNNNNRTG 1 cut(s) 478
Sse9I AATT 3 cut(s) 107, 359, 399
SseBI AGGCCT 1 cut(s) 257
SspMI CTAG 1 cut(s) 305
StuI AGGCCT 1 cut(s) 257
StyD4I CCNGG 3 cut(s) 309, 310, 435
StyI CCWWGG 1 cut(s) 151
TaaI ACNGT 1 cut(s) 319
TaqI TCGA 3 cut(s) 195, 209, 374
TasI AATT 3 cut(s) 107, 359, 399
TfiI GAWTC 2 cut(s) 382, 418
TseFI GTSAC 1 cut(s) 319
TseI GCWGC 2 cut(s) 5, 86
Tsp45I GTSAC 1 cut(s) 319
TspDTI ATGAA 3 cut(s) 266, 353, 462
TspGWI ACGGA 1 cut(s) 406
TspMI CCCGGG 1 cut(s) 310
Van91I CCANNNNNTGG 1 cut(s) 291
XapI RAATTY 2 cut(s) 107, 359
XmaI CCCGGG 1 cut(s) 310
XmnI GAANNNNTTC 2 cut(s) 191, 362
XspI CTAG 1 cut(s) 305
Zsp2I ATGCAT 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.