Rw6G037970

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000437
Physical Location & Seq
Reverse (-)
62193184 .. 62195443
2260 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G037970.1

Sequence Viewer

Length: 2229 bp
ATGCTTACTCGTAGAACTGCTCAAGGCAATCTTACCCCCTTAGATTCAGAGATAGAACGCACTTGCAGGTCGAATAGGAAACAAACGAAGGAAACTAGTTTGCCAATTAACGACACAACGGCGGGTTCTACTTCCTCACAAGGGGAGGAGCACGGGAAAACTCCACCAAACTCACCTGAACAATCAATTCACGAGGACGAAGAGAAACCCCCAAGACTCGACATGGCATTAAAGGATGCTTTTGTTCCGACAGCTTCGGAATCCCCCTCATGCATAGCTTACACACCACCTGGCAATCAGGCCTTTTCCATTCCTGTGCAACTCCTTAACTCGTTGCCTAAGTACACGGGCACGCCATCTGAGGATCCTAATGTTCACATTAGAGAATTTTTGGATATTTGCAAGCTGCAAACCATTCAGAACATCCAACCAGAAGGACTCAGGTTACTTCTATTTCCCTTTTCTTTAAAAGATGATGCAAAACGTTGGTTGTACTCGTTACCTGCAGGTATCATCACAACTTGGGATGAAATGGTGAAGAAGTTTTTGAAACAATACTTCCCCGCTCAATTGACCAAACGATTAAGGAGGGAGATTCAGAACTTCACTCAAAAGGATGGAGATACACTATATGATGCATGGGAGGAATTTCAAGAGTTGCAGAGGAAGTGTCCCCATCACAACTTCAGTCTGAATGACCTTGTCCAATTTTTCTATGATGGATTGGACATAAATAATAGGGGCAGCGTTGATTCTGCATGTGGAGGTACTTTCATGAATAAAACAGGTCAAGAGGCATATAATCTGATTGATGATTTGGCCGACAACAATAGACAATTCTACACAAGAGATAAACGTACACGAGGACGTGGAGTGTATGAAGTTGATTCAAGGAACCAAATGGTGGCAGTGGAAAGAAAGCTTGACATGCTAATGAATGCCTTAGGCAATGGCATTAAGGCAACACCTCAGGTATGTTCTATTTGTTCCTATTCTGATCATACTACTGATAAATGTCCTTTGTCTTCTTTGTCTGAGGAACAGGTGAATTATATGGGGCAACAAAGGCCTAAATACGACCCTTACTCGAACACGTACAATCCGGGATGGAAGGATCACCCTAACTTCCGTTGGAGCAGCAATGACAACGTGGTTCGACCTACACAAGGTGTCTACAATGGACCACCTGGATTCCAACAAGGGGCTAGGCAGCAAATTTATCAACAAGCTCCCCCTCAACAAACCTCAAGCAAGTCTTTGGAAGAACTCGTCAAGGAGATGACCATAAACACCAATGTCTTCATCCAAGAAACAAGATCTCAACTCAAGGAGCATGGTCAATCTATCAAGAACTTGGAAAGGCAGGTTGGGCAACTTGCAACAGACATGCACACTAGACTTCCTGGCACCCTCCCTAGCACAACAATTCAAAATCCTAAGGATGGACGTATGGCTGAGCTCAATGCAATCACTTTAAGGAGTGGTACACAATTGGAAAAAGCTTCTTCGCATCAAAGGGCACCCATGAAAGGTCAAGAAGAGAAGGAGGAGAAAAGAAATATGCAGGAGGAAGAGAAAATCAATCGTTTTGGGGCTGATCAGAATGTTCATGCTTTTTCTCCTCCAAAGGTAAAAGATCCTACTCATCCTAAGTTGGTTACTTCATGTATTCCTTTTCCTCGCAGAAAGATGTTGGAAACTTTCCGTAAAGTCCAAGTGAACATCCCTCTTTTGGATGCCATCCAGCAAATACCTCAGTATGCAAAATTCCTTAAGGAGATATGCACCAAAAAGAGAAAATTCAAAGGGAATGAAATTGTGGCCCTTAGTGAAGAAGTCTCTGCTGTTCTTCAACGAAAGCTTCCACCAAAGCTTAAGGATCCTGGACGCTTTACGATTCCATGCACTATTGGTGCACAGAGGTTTGATCATGCTTTACTAGATTTAGGAGCTTCGATTAATTTAATGCCATATTCTGTGTTTTCAACTCTTAAACTAGGTGGGCTAAAGGAGACGATGGTTATCCTTGAACTAGCAGATCGCTCAACAGTCTATCCTATGGGAGTACTTGAAGATGTACTAGTACGTGTGGATGGATTAATTTTGCCTGCAGACTTCTTTGTTCTTAAGATGGAGGAAGTGCCTATGCCTATATCATTACCATTATTTTGGGGCGCCCATTCATGGCCACAGCTCACACCAACATTGATGTGTTCAGAGGCACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 RVT_1 Retrotrans_gag rve

Protein Analysis

742

Amino Acids

84.12

Weight (kDa)

7.87

Isoelectric Point (pI)

50.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotrans_gag PF03732 151 - 243 1.7e-21 Retrotransposon gag protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000437)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G06105
fragaria_vesca FvH4_1g09709 FvH4_4g02101 FvH4_4g08975 FvH4_6g23372 FvH4_6g39851 FvH4_c1g00300
malus_domestica MD01G1176100.v1.1 MD09G1284900.v1.1 MD15G1306600.v1.1
prunus_persica Prupe.1G227700_v2.0.a1
pyrus_communis pycom01g00630 pycom01g01020 pycom01g01690 pycom01g01760 pycom01g04190 pycom01g04400 pycom02g18130 pycom03g10160 pycom05g06370 pycom05g08930 pycom06g05590 pycom10g06320 pycom11g14330 pycom11g15320 pycom11g16240 pycom12416g00050 pycom12420g00010 pycom12420g00120 pycom12426g00180 pycom12426g00710 pycom12531g00010 pycom1256g00020 pycom1256g00050 pycom1341g00030 pycom1353g00030 pycom13g23070 pycom13g23210 pycom13g26260 pycom13g26370 pycom13g26470 pycom13g26980 pycom14g08550 pycom14g08850 pycom1534g00040 pycom15g28760 pycom15g31230 pycom1604g00040 pycom16g21900 pycom16g26030 pycom1739g00020 pycom1739g00050 pycom17g12970 pycom17g17960 pycom17g18300 pycom17g18650 pycom2172g00020 pycom2438g00020 pycom436g00370 pycom436g00390 pycom576g00050 pycom76g00020
rosa_chinensis RchiOBHm_Chr1g0320811 RchiOBHm_Chr2g0135321 RchiOBHm_Chr3g0485721 RchiOBHm_Chr7g0236571
rosa_multiflora Rmu_sc0000185.1_g000007 Rmu_sc0002094.1_g000030 Rmu_sc0002764.1_g000007 Rmu_sc0002809.1_g000014 Rmu_sc0003005.1_g000007 Rmu_sc0003798.1_g000005 Rmu_sc0004646.1_g000027 Rmu_sc0004665.1_g000009 Rmu_sc0004818.1_g000001 Rmu_sc0004988.1_g000031 Rmu_sc0006373.1_g000007 Rmu_sc0007142.1_g000015 Rmu_sc0009930.1_g000001 Rmu_sc0011451.1_g000001 Rmu_sc0020424.1_g000001 Rmu_sc0036944.1_g000001 Rmu_ssc0000062.1_g000010
rosa_roxburghii Rroxscaffold_2G00123930 Rroxscaffold_3G00231480 Rroxscaffold_6G00413880
rosa_rugosa Rorug04G0084800
rosa_samantha Rh3BG150500 Rh6DG232400
rosa_wichuraiana Rw2G018400 Rw3G027860 Rw4G021220 Rw6G020670 Rw6G037970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 4 cut(s) 57, 497, 511, 1354
AccB1I GGYRCC 3 cut(s) 1406, 1519, 2174
AccB7I CCANNNNNTGG 1 cut(s) 904
AccBSI CCGCTC 1 cut(s) 566
AccI GTMKAC 1 cut(s) 1173
AciI CCGC 2 cut(s) 122, 564
AclI AACGTT 1 cut(s) 484
AclWI GGATC 6 cut(s) 359, 372, 1122, 1631, 1874, 1887
AcoI YGGCCR 2 cut(s) 819, 2186
AcsI RAATTY 5 cut(s) 386, 647, 1215, 1766, 1799
AcuI CTGAAG 1 cut(s) 670
AcyI GRCGYC 1 cut(s) 2175
AdeI CACNNNGTG 1 cut(s) 1169
AfaI GTAC 9 cut(s) 344, 494, 769, 859, 1097, 1486, 2067, 2079, 2085
AfiI CCNNNNNNNGG 8 cut(s) 141, 904, 1166, 1201, 1442, 1529, 1732, 2184
AflII CTTAAG 3 cut(s) 1772, 1874, 2126
AflIII ACRYGT 2 cut(s) 1092, 2086
AgsI TTSAA 9 cut(s) 550, 653, 891, 1430, 1804, 1853, 1986, 2030, 2072
AhlI ACTAGT 2 cut(s) 95, 2080
AjiI CACGTC 1 cut(s) 869
AjnI CCWGG 4 cut(s) 289, 1186, 1402, 1882
AjuI GAANNNNNNNTTGG 2 cut(s) 1350, 1382
Alw21I GWGCWC 3 cut(s) 153, 1461, 1918
Alw26I GTCTC 2 cut(s) 1843, 2006
Alw44I GTGCAC 1 cut(s) 1914
AlwI GGATC 6 cut(s) 359, 372, 1122, 1631, 1874, 1887
AoxI GGCC 5 cut(s) 300, 819, 1067, 1821, 2186
ApaLI GTGCAC 1 cut(s) 1914
ApeKI GCWGC 4 cut(s) 406, 744, 1137, 1210
ApoI RAATTY 5 cut(s) 386, 647, 1215, 1766, 1799
AseI ATTAAT 2 cut(s) 1959, 2099
AspLEI GCGC 1 cut(s) 2177
AspS9I GGNCC 2 cut(s) 1181, 1822
AsuC2I CCSGG 1 cut(s) 1104
AsuHPI GGTGA 4 cut(s) 165, 547, 1057, 1109
AvaII GGWCC 1 cut(s) 1181
AxyI CCTNAGG 3 cut(s) 943, 969, 1437
BaeGI GKGCMC 3 cut(s) 353, 1522, 1918
BalI TGGCCA 1 cut(s) 2188
BamHI GGATCC 2 cut(s) 364, 1879
BanI GGYRCC 3 cut(s) 1406, 1519, 2174
BanII GRGCYC 1 cut(s) 1461
BauI CACGAG 2 cut(s) 191, 861
BbsI GAAGAC 2 cut(s) 1017, 1291
Bbv12I GWGCWC 3 cut(s) 153, 1461, 1918
BbvI GCAGC 4 cut(s) 393, 756, 1149, 1222
BceAI ACGGC 1 cut(s) 135
BciT130I CCWGG 4 cut(s) 291, 1188, 1404, 1884
BclI TGATCA 3 cut(s) 997, 1597, 1927
BcnI CCSGG 1 cut(s) 1104
BcoDI GTCTC 2 cut(s) 1843, 2006
BcuI ACTAGT 2 cut(s) 95, 2080
BfaI CTAG 8 cut(s) 96, 1206, 1395, 1416, 1940, 1997, 2033, 2081
BfmI CTRYAG 2 cut(s) 504, 2109
BfoI RGCGCY 1 cut(s) 2178
BfrI CTTAAG 3 cut(s) 1772, 1874, 2126
BfuAI ACCTGC 4 cut(s) 57, 497, 511, 1354
BglII AGATCT 1 cut(s) 1316
BisI GCNGC 4 cut(s) 407, 745, 1138, 1211
BlpI GCTNAGC 1 cut(s) 1455
BlsI GCNGC 4 cut(s) 408, 746, 1139, 1212
BmcAI AGTACT 1 cut(s) 2067
Bme1390I CCNGG 5 cut(s) 291, 1104, 1188, 1404, 1884
Bme18I GGWCC 1 cut(s) 1181
BmgBI CACGTC 1 cut(s) 869
BmgT120I GGNCC 2 cut(s) 1181, 1822
BmiI GGNNCC 6 cut(s) 366, 896, 1408, 1521, 1881, 2176
BmrFI CCNGG 5 cut(s) 291, 1104, 1188, 1404, 1884
BmsI GCATC 5 cut(s) 226, 466, 625, 1519, 1726
BpiI GAAGAC 2 cut(s) 1017, 1291
Bpu1102I GCTNAGC 1 cut(s) 1455
BpuEI CTTGAG 3 cut(s) 6, 1231, 1310
BpuMI CCSGG 1 cut(s) 1104
BsaAI YACGTR 2 cut(s) 1095, 2087
BsaBI GATNNNNATC 1 cut(s) 2021
BsaHI GRCGYC 1 cut(s) 2175
Bsc4I CCNNNNNNNGG 8 cut(s) 141, 904, 1166, 1201, 1442, 1529, 1732, 2184
Bse21I CCTNAGG 3 cut(s) 943, 969, 1437
Bse3DI GCAATG 2 cut(s) 955, 1147
Bse8I GATNNNNATC 1 cut(s) 2021
BseBI CCWGG 4 cut(s) 291, 1188, 1404, 1884
BseJI GATNNNNATC 1 cut(s) 2021
BseLI CCNNNNNNNGG 8 cut(s) 141, 904, 1166, 1201, 1442, 1529, 1732, 2184
BseMI GCAATG 2 cut(s) 955, 1147
BseMII CTCAG 6 cut(s) 351, 454, 983, 1026, 1446, 1769
BseRI GAGGAG 3 cut(s) 161, 1562, 1611
BseSI GKGCMC 3 cut(s) 353, 1522, 1918
BseXI GCAGC 4 cut(s) 393, 756, 1149, 1222
BshFI GGCC 5 cut(s) 302, 821, 1069, 1823, 2188
BshNI GGYRCC 3 cut(s) 1406, 1519, 2174
BsiHKAI GWGCWC 3 cut(s) 153, 1461, 1918
BsiSI CCGG 1 cut(s) 1103
BslFI GGGAC 1 cut(s) 657
BslI CCNNNNNNNGG 8 cut(s) 141, 904, 1166, 1201, 1442, 1529, 1732, 2184
BsmAI GTCTC 2 cut(s) 1843, 2006
BsmBI CGTCTC 1 cut(s) 2006
BsmFI GGGAC 1 cut(s) 657
BsmI GAATGC 1 cut(s) 943
BsnI GGCC 5 cut(s) 302, 821, 1069, 1823, 2188
Bsp1286I GDGCHC 5 cut(s) 153, 353, 1461, 1522, 1918
Bsp143I GATC 9 cut(s) 364, 997, 1114, 1316, 1597, 1636, 1879, 1927, 2038
Bsp1720I GCTNAGC 1 cut(s) 1455
BspACI CCGC 2 cut(s) 122, 564
BspANI GGCC 5 cut(s) 302, 821, 1069, 1823, 2188
BspCNI CTCAG 6 cut(s) 352, 453, 982, 1027, 1447, 1768
BspHI TCATGA 1 cut(s) 774
BspLI GGNNCC 6 cut(s) 366, 896, 1408, 1521, 1881, 2176
BspMAI CTGCAG 2 cut(s) 508, 2113
BspMI ACCTGC 4 cut(s) 57, 497, 511, 1354
BspPI GGATC 6 cut(s) 359, 372, 1122, 1631, 1874, 1887
BspT107I GGYRCC 3 cut(s) 1406, 1519, 2174
BspTI CTTAAG 3 cut(s) 1772, 1874, 2126
BsrBI CCGCTC 1 cut(s) 566
BsrDI GCAATG 2 cut(s) 955, 1147
BssMI GATC 9 cut(s) 364, 997, 1114, 1316, 1597, 1636, 1879, 1927, 2038
BssNI GRCGYC 1 cut(s) 2175
BssSI CACGAG 2 cut(s) 191, 861
Bst2BI CACGAG 2 cut(s) 191, 861
Bst2UI CCWGG 4 cut(s) 291, 1188, 1404, 1884
Bst4CI ACNGT 1 cut(s) 2050
Bst6I CTCTTC 3 cut(s) 195, 1533, 1566
BstACI GRCGYC 1 cut(s) 2175
BstAFI CTTAAG 3 cut(s) 1772, 1874, 2126
BstBAI YACGTR 2 cut(s) 1095, 2087
BstC8I GCNNGC 3 cut(s) 353, 404, 2109
BstENI CCTNNNNNAGG 1 cut(s) 1164
BstH2I RGCGCY 1 cut(s) 2178
BstHHI GCGC 1 cut(s) 2177
BstKTI GATC 9 cut(s) 367, 1000, 1117, 1319, 1600, 1639, 1882, 1930, 2041
BstMAI GTCTC 2 cut(s) 1843, 2006
BstMBI GATC 9 cut(s) 364, 997, 1114, 1316, 1597, 1636, 1879, 1927, 2038
BstMWI GCNNNNNNNGC 3 cut(s) 928, 1066, 1369
BstNI CCWGG 4 cut(s) 291, 1188, 1404, 1884
BstNSI RCATGY 3 cut(s) 762, 931, 1390
BstSCI CCNGG 5 cut(s) 289, 1102, 1186, 1402, 1882
BstSFI CTRYAG 2 cut(s) 504, 2109
BstSLI GKGCMC 3 cut(s) 353, 1522, 1918
BstV1I GCAGC 4 cut(s) 393, 756, 1149, 1222
BstV2I GAAGAC 2 cut(s) 1017, 1291
BstX2I RGATCY 4 cut(s) 364, 1316, 1636, 1879
BstXI CCANNNNNNTGG 1 cut(s) 2169
BstYI RGATCY 4 cut(s) 364, 1316, 1636, 1879
Bsu36I CCTNAGG 3 cut(s) 943, 969, 1437
BsuRI GGCC 5 cut(s) 302, 821, 1069, 1823, 2188
BtrI CACGTC 1 cut(s) 869
BtsI GCAGTG 1 cut(s) 915
BtsIMutI CAGTG 1 cut(s) 915
BveI ACCTGC 4 cut(s) 57, 497, 511, 1354
Cac8I GCNNGC 3 cut(s) 353, 404, 2109
CciI TCATGA 1 cut(s) 774
CfoI GCGC 1 cut(s) 2177
Cfr13I GGNCC 2 cut(s) 1181, 1822
CseI GACGC 1 cut(s) 1896
Csp6I GTAC 9 cut(s) 343, 493, 768, 858, 1096, 1485, 2066, 2078, 2084
CviQI GTAC 9 cut(s) 343, 493, 768, 858, 1096, 1485, 2066, 2078, 2084
DinI GGCGCC 1 cut(s) 2176
DpnI GATC 9 cut(s) 366, 999, 1116, 1318, 1599, 1638, 1881, 1929, 2040
DpnII GATC 9 cut(s) 364, 997, 1114, 1316, 1597, 1636, 1879, 1927, 2038
DraI TTTAAA 1 cut(s) 468
DraIII CACNNNGTG 1 cut(s) 1169
EaeI YGGCCR 2 cut(s) 819, 2186
Eam1104I CTCTTC 3 cut(s) 195, 1533, 1566
EarI CTCTTC 3 cut(s) 195, 1533, 1566
Ecl136II GAGCTC 1 cut(s) 1459
Eco147I AGGCCT 2 cut(s) 302, 1069
Eco24I GRGCYC 1 cut(s) 1461
Eco47I GGWCC 1 cut(s) 1181
Eco53kI GAGCTC 1 cut(s) 1459
Eco57I CTGAAG 1 cut(s) 670
Eco81I CCTNAGG 3 cut(s) 943, 969, 1437
EcoICRI GAGCTC 1 cut(s) 1459
EcoNI CCTNNNNNAGG 1 cut(s) 1164
EcoRII CCWGG 4 cut(s) 289, 1186, 1402, 1882
EcoT22I ATGCAT 2 cut(s) 275, 640
EcoT38I GRGCYC 1 cut(s) 1461
EgeI GGCGCC 1 cut(s) 2176
EheI GGCGCC 1 cut(s) 2176
Esp3I CGTCTC 1 cut(s) 2006
FalI AAGNNNNNCTT 4 cut(s) 15, 47, 1240, 1272
FaqI GGGAC 1 cut(s) 657
FauI CCCGC 2 cut(s) 115, 571
FbaI TGATCA 3 cut(s) 997, 1597, 1927
FblI GTMKAC 1 cut(s) 1173
Fnu4HI GCNGC 4 cut(s) 407, 745, 1138, 1211
FriOI GRGCYC 1 cut(s) 1461
Fsp4HI GCNGC 4 cut(s) 407, 745, 1138, 1211
FspBI CTAG 8 cut(s) 96, 1206, 1395, 1416, 1940, 1997, 2033, 2081
GlaI GCGC 1 cut(s) 2176
GluI GCNGC 4 cut(s) 407, 745, 1138, 1211
HaeII RGCGCY 1 cut(s) 2178
HaeIII GGCC 5 cut(s) 302, 821, 1069, 1823, 2188
HapII CCGG 1 cut(s) 1103
HgaI GACGC 1 cut(s) 1896
HhaI GCGC 1 cut(s) 2177
Hin1I GRCGYC 1 cut(s) 2175
Hin6I GCGC 1 cut(s) 2175
HinP1I GCGC 1 cut(s) 2175
HindIII AAGCTT 4 cut(s) 920, 1500, 1859, 1871
HinfI GANTC 9 cut(s) 44, 216, 260, 438, 595, 752, 887, 1191, 1897
HpaII CCGG 1 cut(s) 1103
HphI GGTGA 4 cut(s) 165, 547, 1057, 1109
Hpy166II GTNNAC 7 cut(s) 345, 376, 860, 1174, 1487, 1720, 1916
Hpy188III TCNNGA 6 cut(s) 191, 653, 775, 791, 1348, 1535
Hpy8I GTNNAC 7 cut(s) 345, 376, 860, 1174, 1487, 1720, 1916
HpyAV CCTTC 4 cut(s) 82, 428, 1105, 1537
HpyCH4III ACNGT 1 cut(s) 2050
HpyCH4IV ACGT 7 cut(s) 484, 856, 868, 1094, 1149, 1447, 2086
HpyF10VI GCNNNNNNNGC 3 cut(s) 928, 1066, 1369
HpySE526I ACGT 7 cut(s) 484, 856, 868, 1094, 1149, 1447, 2086
Hsp92I GRCGYC 1 cut(s) 2175
HspAI GCGC 1 cut(s) 2175
KasI GGCGCC 1 cut(s) 2174
Ksp22I TGATCA 3 cut(s) 997, 1597, 1927
Kzo9I GATC 9 cut(s) 364, 997, 1114, 1316, 1597, 1636, 1879, 1927, 2038
LmnI GCTCC 5 cut(s) 148, 1134, 1234, 1330, 1949
Lsp1109I GCAGC 4 cut(s) 393, 756, 1149, 1222
LweI GCATC 5 cut(s) 226, 466, 625, 1519, 1726
MaeI CTAG 8 cut(s) 96, 1206, 1395, 1416, 1940, 1997, 2033, 2081
MaeII ACGT 7 cut(s) 484, 856, 868, 1094, 1149, 1447, 2086
MaeIII GTNAC 3 cut(s) 444, 498, 1657
MalI GATC 9 cut(s) 366, 999, 1116, 1318, 1599, 1638, 1881, 1929, 2040
MbiI CCGCTC 1 cut(s) 566
MboI GATC 9 cut(s) 364, 997, 1114, 1316, 1597, 1636, 1879, 1927, 2038
MfeI CAATTG 2 cut(s) 569, 1490
MflI RGATCY 4 cut(s) 364, 1316, 1636, 1879
MhlI GDGCHC 5 cut(s) 153, 353, 1461, 1522, 1918
MlsI TGGCCA 1 cut(s) 2188
MluNI TGGCCA 1 cut(s) 2188
Mly113I GGCGCC 1 cut(s) 2175
MlyI GAGTC 2 cut(s) 210, 432
MmeI TCCRAC 5 cut(s) 272, 451, 1112, 1219, 1674
Mox20I TGGCCA 1 cut(s) 2188
Mph1103I ATGCAT 2 cut(s) 275, 640
MscI TGGCCA 1 cut(s) 2188
MslI CAYNNNNRTG 3 cut(s) 314, 932, 2209
Msp20I TGGCCA 1 cut(s) 2188
MspCI CTTAAG 3 cut(s) 1772, 1874, 2126
MspI CCGG 1 cut(s) 1103
MspR9I CCNGG 5 cut(s) 291, 1104, 1188, 1404, 1884
MunI CAATTG 2 cut(s) 569, 1490
Mva1269I GAATGC 1 cut(s) 943
MvaI CCWGG 4 cut(s) 291, 1188, 1404, 1884
MwoI GCNNNNNNNGC 3 cut(s) 928, 1066, 1369
NarI GGCGCC 1 cut(s) 2175
NciI CCSGG 1 cut(s) 1104
NdeII GATC 9 cut(s) 364, 997, 1114, 1316, 1597, 1636, 1879, 1927, 2038
NlaIV GGNNCC 6 cut(s) 366, 896, 1408, 1521, 1881, 2176
NsiI ATGCAT 2 cut(s) 275, 640
NspI RCATGY 3 cut(s) 762, 931, 1390
PagI TCATGA 1 cut(s) 774
PceI AGGCCT 2 cut(s) 302, 1069
PctI GAATGC 1 cut(s) 943
PfeI GAWTC 7 cut(s) 44, 260, 595, 752, 887, 1191, 1897
PflFI GACNNNGTC 1 cut(s) 701
PflMI CCANNNNNTGG 1 cut(s) 904
PfoI TCCNGGA 2 cut(s) 1102, 1882
PkrI GCNGC 4 cut(s) 408, 746, 1139, 1212
PleI GAGTC 2 cut(s) 210, 432
PluTI GGCGCC 1 cut(s) 2178
PpsI GAGTC 2 cut(s) 210, 432
Ppu21I YACGTR 2 cut(s) 1095, 2087
PshBI ATTAAT 2 cut(s) 1959, 2099
Psp124BI GAGCTC 1 cut(s) 1461
Psp1406I AACGTT 1 cut(s) 484
Psp6I CCWGG 4 cut(s) 289, 1186, 1402, 1882
PspGI CCWGG 4 cut(s) 289, 1186, 1402, 1882
PspN4I GGNNCC 6 cut(s) 366, 896, 1408, 1521, 1881, 2176
PspPI GGNCC 2 cut(s) 1181, 1822
PstI CTGCAG 2 cut(s) 508, 2113
PsuI RGATCY 4 cut(s) 364, 1316, 1636, 1879
PsyI GACNNNGTC 1 cut(s) 701
RsaI GTAC 9 cut(s) 344, 494, 769, 859, 1097, 1486, 2067, 2079, 2085
RsaNI GTAC 9 cut(s) 343, 493, 768, 858, 1096, 1485, 2066, 2078, 2084
RseI CAYNNNNRTG 3 cut(s) 314, 932, 2209
SacI GAGCTC 1 cut(s) 1461
SatI GCNGC 4 cut(s) 407, 745, 1138, 1211
Sau3AI GATC 9 cut(s) 364, 997, 1114, 1316, 1597, 1636, 1879, 1927, 2038
Sau96I GGNCC 2 cut(s) 1181, 1822
SbfI CCTGCAGG 1 cut(s) 508
ScaI AGTACT 1 cut(s) 2067
SchI GAGTC 2 cut(s) 210, 432
ScrFI CCNGG 5 cut(s) 291, 1104, 1188, 1404, 1884
SdaI CCTGCAGG 1 cut(s) 508
SduI GDGCHC 5 cut(s) 153, 353, 1461, 1522, 1918
SfaNI GCATC 5 cut(s) 226, 466, 625, 1519, 1726
SfcI CTRYAG 2 cut(s) 504, 2109
SfoI GGCGCC 1 cut(s) 2176
SinI GGWCC 1 cut(s) 1181
SmiMI CAYNNNNRTG 3 cut(s) 314, 932, 2209
SmlI CTYRAG 6 cut(s) 21, 1246, 1325, 1772, 1874, 2126
SmoI CTYRAG 6 cut(s) 21, 1246, 1325, 1772, 1874, 2126
SpeI ACTAGT 2 cut(s) 95, 2080
Sse8387I CCTGCAGG 1 cut(s) 508
SseBI AGGCCT 2 cut(s) 302, 1069
SsiI CCGC 2 cut(s) 122, 564
SspDI GGCGCC 1 cut(s) 2174
SspMI CTAG 8 cut(s) 96, 1206, 1395, 1416, 1940, 1997, 2033, 2081
SstI GAGCTC 1 cut(s) 1461
StuI AGGCCT 2 cut(s) 302, 1069
StyD4I CCNGG 5 cut(s) 289, 1102, 1186, 1402, 1882
TaaI ACNGT 1 cut(s) 2050
TaiI ACGT 7 cut(s) 487, 859, 871, 1097, 1152, 1450, 2089
TaqI TCGA 5 cut(s) 71, 219, 1088, 1156, 1955
TatI WGTACW 4 cut(s) 342, 492, 2065, 2077
TfiI GAWTC 7 cut(s) 44, 260, 595, 752, 887, 1191, 1897
TscAI CASTG 1 cut(s) 915
TseI GCWGC 4 cut(s) 406, 744, 1137, 1210
TspGWI ACGGA 2 cut(s) 1118, 1694
TspRI CASTG 1 cut(s) 915
Tth111I GACNNNGTC 1 cut(s) 701
Van91I CCANNNNNTGG 1 cut(s) 904
Vha464I CTTAAG 3 cut(s) 1772, 1874, 2126
VneI GTGCAC 1 cut(s) 1914
VpaK11BI GGWCC 1 cut(s) 1181
VspI ATTAAT 2 cut(s) 1959, 2099
XagI CCTNNNNNAGG 1 cut(s) 1164
XapI RAATTY 5 cut(s) 386, 647, 1215, 1766, 1799
XceI RCATGY 3 cut(s) 762, 931, 1390
XmiI GTMKAC 1 cut(s) 1173
XspI CTAG 8 cut(s) 96, 1206, 1395, 1416, 1940, 1997, 2033, 2081
ZrmI AGTACT 1 cut(s) 2067
Zsp2I ATGCAT 2 cut(s) 275, 640
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.