FvH4_4g09430

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000368
Physical Location & Seq
Reverse (-)
11134627 .. 11136096
1470 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g09430.t1

Sequence Viewer

Length: 462 bp
ATGTTTTGGCAGGAGCAACAACAAGTTTTCTTCAGAATCTTGAGTATTGCATCTCAGGTGGCTCTAAATCAAACCATTAGGGAAGCAGAGATAAACTTCAATCAATTGTCCATCACAGAAAGGGCCGTATGTGATAAAGAAACGCTTGTGAATGTGAACAACAAAAAAGTGAAAGATTCAACCAGCAAGGCAGCTACTGGATCCCAGAGTGAATATATAGCGGTTACAATACTGGTGGCGACTCGAGGATTGTATAAGCTGCCAACAGTTGATGACAGTAGTACCTTGAAGCAAGGATTGCAAAACCTCAAATCCATTCCCTCAAACAATATATTGTCGGTAGAAGTCTTGTGGACTCCTCAAGAAGAAGATGACAATCTCTCAGAACTGCAATTACTCAAAAAGTACCCTCTTTTGAAGCCGTTTAAAGATTATCCATTTGTTAAAATTACGTTAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

154

Amino Acids

17.39

Weight (kDa)

5.6

Isoelectric Point (pI)

45.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1517 PF07466 18 - 141 9.4e-38 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54520
fragaria_vesca FvH4_4g09430 FvH4_5g29750 FvH4_6g03490 FvH4_6g03500 FvH4_6g03510 FvH4_6g03510 FvH4_6g03510 FvH4_6g03520 FvH4_6g03530 FvH4_6g03530 FvH4_6g03530
malus_domestica MD04G1220400.v1.1 MD12G1236800.v1.1
prunus_persica Prupe.6G339400_v2.0.a1 Prupe.6G339400_v2.0.a1
pyrus_communis pycom04g19510 pycom12g21790
rosa_chinensis RchiOBHm_Chr3g0451981 RchiOBHm_Chr3g0451991 RchiOBHm_Chr3g0452001 RchiOBHm_Chr3g0452011 RchiOBHm_Chr3g0452041 RchiOBHm_Chr3g0452111 RchiOBHm_Chr3g0452121
rosa_laevigata RLG00000009056 RLG00000025627 RLG00000025628 RLG00000025630 RLG00000025631 RLG00000025632 RLG00000035582
rosa_multiflora Rmu_co8213316.1_g000001 Rmu_co8226081.1_g000001 Rmu_co8290691.1_g000001 Rmu_sc0001358.1_g000002 Rmu_sc0001358.1_g000004 Rmu_sc0001358.1_g000008 Rmu_sc0001358.1_g000011 Rmu_sc0001448.1_g000001 Rmu_sc0001448.1_g000005 Rmu_sc0001448.1_g000009 Rmu_sc0001729.1_g000006 Rmu_sc0001729.1_g000012 Rmu_sc0001729.1_g000017
rosa_roxburghii Rroxscaffold_164G00436060 Rroxscaffold_164G00436070 Rroxscaffold_164G00436100 Rroxscaffold_164G00436110 Rroxscaffold_164G00436120 Rroxscaffold_164G00436130 Rroxscaffold_4G00296230 Rroxscaffold_6G00389530 Rroxscaffold_6G00429160 Rroxscaffold_6G00429170 Rroxscaffold_6G00429200 Rroxscaffold_6G00429220 Rroxscaffold_6G00429240
rosa_rugosa Rorug01G0052400 Rorug01G0052500 Rorug02G0637900 Rorug02G0637900 Rorug02G0638000 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638200 Rorug02G0638300 Rorug02G0638400 Rorug04G0037400
rosa_samantha Rh2DG349300 Rh3AG039600 Rh3AG039700 Rh3AG039800 Rh3AG039900 Rh3AG040200 Rh3AG040300 Rh3BG041100 Rh3BG041200 Rh3BG041300 Rh3BG041500 Rh3BG041700 Rh3BG041800 Rh3CG039500 Rh3CG039600 Rh3CG039700 Rh3CG039800 Rh3CG040000 Rh3CG040200 Rh3DG040200 Rh3DG040400 Rh3DG040500 Rh3DG041000 Rh3DG041100 Rh4BG107500 Rh6BG085400 Rh6DG400800
rosa_wichuraiana Rw0G023520 Rw3G002980 Rw3G002990 Rw3G003010 Rw3G003030 Rw3G003040 Rw3G003060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 221
AclWI GGATC 2 cut(s) 195, 208
AcuI CTGAAG 1 cut(s) 16
AfaI GTAC 2 cut(s) 283, 407
AgsI TTSAA 4 cut(s) 100, 180, 289, 418
AluBI AGCT 2 cut(s) 194, 259
AluI AGCT 2 cut(s) 194, 259
AlwI GGATC 2 cut(s) 195, 208
AlwNI CAGNNNCTG 1 cut(s) 197
Ama87I CYCGRG 1 cut(s) 243
AoxI GGCC 1 cut(s) 123
ApeKI GCWGC 2 cut(s) 191, 259
AspS9I GGNCC 1 cut(s) 123
AvaI CYCGRG 1 cut(s) 243
BaeI ACNNNNGTAYC 2 cut(s) 265, 298
BamHI GGATCC 1 cut(s) 200
BbvI GCAGC 2 cut(s) 203, 246
BccI CCATC 1 cut(s) 119
BceAI ACGGC 2 cut(s) 110, 406
BisI GCNGC 2 cut(s) 192, 260
BlsI GCNGC 2 cut(s) 193, 261
BmeT110I CYCGRG 1 cut(s) 243
BmgT120I GGNCC 1 cut(s) 123
BmiI GGNNCC 1 cut(s) 202
BmsI GCATC 1 cut(s) 59
BpuEI CTTGAG 2 cut(s) 61, 345
BsaBI GATNNNNATC 1 cut(s) 375
Bse1I ACTGG 2 cut(s) 202, 237
Bse8I GATNNNNATC 1 cut(s) 375
BseJI GATNNNNATC 1 cut(s) 375
BseMII CTCAG 2 cut(s) 68, 396
BseNI ACTGG 2 cut(s) 202, 237
BseRI GAGGAG 1 cut(s) 348
BseXI GCAGC 2 cut(s) 203, 246
BshFI GGCC 1 cut(s) 125
BsiHKCI CYCGRG 1 cut(s) 243
BsnI GGCC 1 cut(s) 125
BsoBI CYCGRG 1 cut(s) 243
Bsp143I GATC 1 cut(s) 200
BspACI CCGC 1 cut(s) 221
BspANI GGCC 1 cut(s) 125
BspCNI CTCAG 2 cut(s) 67, 395
BspLI GGNNCC 1 cut(s) 202
BspPI GGATC 2 cut(s) 195, 208
BsrI ACTGG 2 cut(s) 202, 237
BssMI GATC 1 cut(s) 200
Bst4CI ACNGT 2 cut(s) 268, 278
BstAPI GCANNNNNTGC 1 cut(s) 298
BstDEI CTNAG 2 cut(s) 54, 382
BstKTI GATC 1 cut(s) 203
BstMBI GATC 1 cut(s) 200
BstMWI GCNNNNNNNGC 1 cut(s) 298
BstV1I GCAGC 2 cut(s) 203, 246
BstX2I RGATCY 1 cut(s) 200
BstYI RGATCY 1 cut(s) 200
BsuRI GGCC 1 cut(s) 125
CaiI CAGNNNCTG 1 cut(s) 197
Cfr13I GGNCC 1 cut(s) 123
Csp6I GTAC 2 cut(s) 282, 406
CspCI CAANNNNNGTGG 2 cut(s) 216, 251
CviJI RGCY 5 cut(s) 62, 125, 194, 259, 421
CviKI_1 RGCY 5 cut(s) 62, 125, 194, 259, 421
CviQI GTAC 2 cut(s) 282, 406
DdeI CTNAG 2 cut(s) 54, 382
DpnI GATC 1 cut(s) 202
DpnII GATC 1 cut(s) 200
DraI TTTAAA 1 cut(s) 427
Eco57I CTGAAG 1 cut(s) 16
Eco88I CYCGRG 1 cut(s) 243
FaiI YATR 5 cut(s) 130, 216, 218, 255, 332
FalI AAGNNNNNCTT 2 cut(s) 129, 161
Fnu4HI GCNGC 2 cut(s) 192, 260
Fsp4HI GCNGC 2 cut(s) 192, 260
GluI GCNGC 2 cut(s) 192, 260
HaeIII GGCC 1 cut(s) 125
HinfI GANTC 4 cut(s) 36, 176, 241, 355
Hpy166II GTNNAC 2 cut(s) 157, 354
Hpy188I TCNGA 2 cut(s) 35, 385
Hpy188III TCNNGA 2 cut(s) 40, 362
Hpy8I GTNNAC 2 cut(s) 157, 354
HpyCH4III ACNGT 2 cut(s) 268, 278
HpyCH4IV ACGT 1 cut(s) 452
HpyCH4V TGCA 3 cut(s) 50, 301, 391
HpyF10VI GCNNNNNNNGC 1 cut(s) 298
HpyF3I CTNAG 2 cut(s) 54, 382
HpySE526I ACGT 1 cut(s) 452
Kzo9I GATC 1 cut(s) 200
LmnI GCTCC 1 cut(s) 13
LpnPI CCDG 5 cut(s) 41, 183, 196, 218, 218
Lsp1109I GCAGC 2 cut(s) 203, 246
LweI GCATC 1 cut(s) 59
MaeII ACGT 1 cut(s) 452
MaeIII GTNAC 1 cut(s) 223
MalI GATC 1 cut(s) 202
MboI GATC 1 cut(s) 200
MboII GAAGA 3 cut(s) 22, 377, 380
MfeI CAATTG 1 cut(s) 104
MflI RGATCY 1 cut(s) 200
MluCI AATT 3 cut(s) 104, 392, 447
MlyI GAGTC 2 cut(s) 235, 349
MnlI CCTC 5 cut(s) 239, 317, 331, 369, 420
MseI TTAA 2 cut(s) 426, 444
MunI CAATTG 1 cut(s) 104
MwoI GCNNNNNNNGC 1 cut(s) 298
NdeII GATC 1 cut(s) 200
NlaIV GGNNCC 1 cut(s) 202
PaeR7I CTCGAG 1 cut(s) 243
PfeI GAWTC 2 cut(s) 36, 176
PkrI GCNGC 2 cut(s) 193, 261
PleI GAGTC 2 cut(s) 235, 349
PpsI GAGTC 2 cut(s) 235, 349
PspN4I GGNNCC 1 cut(s) 202
PspPI GGNCC 1 cut(s) 123
PspXI VCTCGAGB 1 cut(s) 243
PsrI GAACNNNNNNTAC 2 cut(s) 378, 410
PstNI CAGNNNCTG 1 cut(s) 197
PsuI RGATCY 1 cut(s) 200
RsaI GTAC 2 cut(s) 283, 407
RsaNI GTAC 2 cut(s) 282, 406
SaqAI TTAA 2 cut(s) 426, 444
SatI GCNGC 2 cut(s) 192, 260
Sau3AI GATC 1 cut(s) 200
Sau96I GGNCC 1 cut(s) 123
SchI GAGTC 2 cut(s) 235, 349
SetI ASST 6 cut(s) 60, 196, 261, 287, 309, 455
SfaNI GCATC 1 cut(s) 59
Sfr274I CTCGAG 1 cut(s) 243
SlaI CTCGAG 1 cut(s) 243
SmlI CTYRAG 3 cut(s) 40, 243, 360
SmoI CTYRAG 3 cut(s) 40, 243, 360
Sse9I AATT 3 cut(s) 104, 392, 447
SsiI CCGC 1 cut(s) 221
TaaI ACNGT 2 cut(s) 268, 278
TaiI ACGT 1 cut(s) 455
TaqI TCGA 1 cut(s) 244
TasI AATT 3 cut(s) 104, 392, 447
TfiI GAWTC 2 cut(s) 36, 176
Tru1I TTAA 2 cut(s) 426, 444
Tru9I TTAA 2 cut(s) 426, 444
TseI GCWGC 2 cut(s) 191, 259
XhoI CTCGAG 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.