RLG00000025627

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000368
Physical Location & Seq
Reverse (-)
47157093 .. 47161275
4183 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025627

Sequence Viewer

Length: 1017 bp
ATGACAAGATGGGAAGACGAAGATGAGGTTGAGATTGAATCGAATCGAATCGAAAATTCGAAATGGACACCTGCATGTCCACTAGCCACAACTCCTCCCCTTAGATTTTTCCTCCCAAACCCACCTCCCACCCCTCCTCCAATCCCACAACCCAAAATCTCCATGGCAATAACTGCTTCTTTGCTCCAACCCAATCCCCTGAAATGGAACCAAACCCACCACCACCCTCACCCTCTTCTCTTCTCCCCTTTCCGCTCCAATATACTCAAACTCAACACCCCACAATCCTTCAAGCTCAAATGCTCCTTCTCCGAATCCAAACCACAGCTCGTGGCAGTGAAACCGAACCCAATAGAGGTTTTGGCAGATAAGCTCTTGAAGGCTCTGAAAGCGCTGAGGAAGCCCGCAATGGCGGCGGTGCTGTTGGGCCTGGTGTTGATGTCCGACCCGAACTCCGCTTTAGCCGCCTCGGGCGGTCGGGTCGGGGGTCAGGCCTTCTCGTCGCGCTCGGGTTCTTCGTCGTCGTCGAGGAGTTACTCGGTGCCGAGGACGTCGAGGCCGGATTACTCGTACTCTGCGCCGTACTACGCGCCTTCGCCGTTCGGGTTTAGTGGCGGTGGAGGCGGGTTTTATATGGGCCCGGCCGTCGGGGTCGGAGTCGGAGCCGGGTCGAGTTTTCTTCTGATTTTGACGGGTTTTGCGGCGTTTGTTTTGGTTTCGGGTTTTCTTTCGGATCGGTCTGAGGGGAGTGTGCTTACTGCTACTGAGAAAACTACTGTTTTGAAGTTGCAGAGGAAGGAGTTTGACTTTGAAAGAAAGAAAGGGTTTGAAAAGAACAGTTGGATAGGAACATTTACTGGCCGGAAAACAACACTAGCATTGCTTAGGCATCCTGATTATTGCATCTCAGGTTTAGAAGGACACGCCCAATCTTCAGCAAGGAACTTAGGAATTAGGATGCTATCATCTGGCCAAAAATTAGTTTTGACTTTTGAGTCTGGTAGAATGTGGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

339

Amino Acids

36.75

Weight (kDa)

9.83

Isoelectric Point (pI)

57.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54520
fragaria_vesca FvH4_4g09430 FvH4_5g29750 FvH4_6g03490 FvH4_6g03500 FvH4_6g03510 FvH4_6g03510 FvH4_6g03510 FvH4_6g03520 FvH4_6g03530 FvH4_6g03530 FvH4_6g03530
malus_domestica MD04G1220400.v1.1 MD12G1236800.v1.1
prunus_persica Prupe.6G339400_v2.0.a1 Prupe.6G339400_v2.0.a1
pyrus_communis pycom04g19510 pycom12g21790
rosa_chinensis RchiOBHm_Chr3g0451981 RchiOBHm_Chr3g0451991 RchiOBHm_Chr3g0452001 RchiOBHm_Chr3g0452011 RchiOBHm_Chr3g0452041 RchiOBHm_Chr3g0452111 RchiOBHm_Chr3g0452121
rosa_laevigata RLG00000009056 RLG00000025627 RLG00000025628 RLG00000025630 RLG00000025631 RLG00000025632 RLG00000035582
rosa_multiflora Rmu_co8213316.1_g000001 Rmu_co8226081.1_g000001 Rmu_co8290691.1_g000001 Rmu_sc0001358.1_g000002 Rmu_sc0001358.1_g000004 Rmu_sc0001358.1_g000008 Rmu_sc0001358.1_g000011 Rmu_sc0001448.1_g000001 Rmu_sc0001448.1_g000005 Rmu_sc0001448.1_g000009 Rmu_sc0001729.1_g000006 Rmu_sc0001729.1_g000012 Rmu_sc0001729.1_g000017
rosa_roxburghii Rroxscaffold_164G00436060 Rroxscaffold_164G00436070 Rroxscaffold_164G00436100 Rroxscaffold_164G00436110 Rroxscaffold_164G00436120 Rroxscaffold_164G00436130 Rroxscaffold_4G00296230 Rroxscaffold_6G00389530 Rroxscaffold_6G00429160 Rroxscaffold_6G00429170 Rroxscaffold_6G00429200 Rroxscaffold_6G00429220 Rroxscaffold_6G00429240
rosa_rugosa Rorug01G0052400 Rorug01G0052500 Rorug02G0637900 Rorug02G0637900 Rorug02G0638000 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638200 Rorug02G0638300 Rorug02G0638400 Rorug04G0037400
rosa_samantha Rh2DG349300 Rh3AG039600 Rh3AG039700 Rh3AG039800 Rh3AG039900 Rh3AG040200 Rh3AG040300 Rh3BG041100 Rh3BG041200 Rh3BG041300 Rh3BG041500 Rh3BG041700 Rh3BG041800 Rh3CG039500 Rh3CG039600 Rh3CG039700 Rh3CG039800 Rh3CG040000 Rh3CG040200 Rh3DG040200 Rh3DG040400 Rh3DG040500 Rh3DG041000 Rh3DG041100 Rh4BG107500 Rh6BG085400 Rh6DG400800
rosa_wichuraiana Rw0G023520 Rw3G002980 Rw3G002990 Rw3G003010 Rw3G003030 Rw3G003040 Rw3G003060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 79
AasI GACNNNNNNGTC 1 cut(s) 994
AatII GACGTC 1 cut(s) 554
Acc36I ACCTGC 1 cut(s) 79
AccB1I GGYRCC 1 cut(s) 541
AccBSI CCGCTC 1 cut(s) 255
AccII CGCG 2 cut(s) 505, 590
AclWI GGATC 1 cut(s) 741
AcoI YGGCCR 3 cut(s) 642, 859, 970
AcsI RAATTY 1 cut(s) 55
AcuI CTGAAG 1 cut(s) 918
AcyI GRCGYC 1 cut(s) 551
AfaI GTAC 3 cut(s) 572, 584, 1013
AfeI AGCGCT 1 cut(s) 393
AfiI CCNNNNNNNGG 3 cut(s) 204, 355, 647
AgsI TTSAA 6 cut(s) 38, 292, 379, 784, 812, 830
AjnI CCWGG 1 cut(s) 429
AluBI AGCT 3 cut(s) 295, 328, 373
AluI AGCT 3 cut(s) 295, 328, 373
AlwI GGATC 1 cut(s) 741
Ama87I CYCGRG 2 cut(s) 469, 508
Aor51HI AGCGCT 1 cut(s) 393
AoxI GGCC 7 cut(s) 427, 492, 557, 637, 642, 859, 970
ApaI GGGCCC 1 cut(s) 641
ApoI RAATTY 1 cut(s) 55
AspLEI GCGC 4 cut(s) 394, 507, 580, 592
AspS9I GGNCC 3 cut(s) 427, 637, 638
AsuC2I CCSGG 2 cut(s) 641, 667
AsuHPI GGTGA 1 cut(s) 221
AsuII TTCGAA 1 cut(s) 59
AvaI CYCGRG 2 cut(s) 469, 508
BaeGI GKGCMC 1 cut(s) 641
BalI TGGCCA 1 cut(s) 972
BanI GGYRCC 1 cut(s) 541
BanII GRGCYC 1 cut(s) 641
BauI CACGAG 1 cut(s) 329
BbsI GAAGAC 1 cut(s) 21
BbvCI CCTCAGC 1 cut(s) 395
BccI CCATC 1 cut(s) 3
BceAI ACGGC 3 cut(s) 565, 583, 629
BciT130I CCWGG 1 cut(s) 431
BcnI CCSGG 2 cut(s) 641, 667
BfaI CTAG 2 cut(s) 83, 875
BfoI RGCGCY 1 cut(s) 395
BfuAI ACCTGC 1 cut(s) 79
BisI GCNGC 3 cut(s) 414, 465, 702
BlsI GCNGC 3 cut(s) 415, 466, 703
Bme1390I CCNGG 3 cut(s) 431, 641, 667
BmeT110I CYCGRG 2 cut(s) 469, 508
BmgT120I GGNCC 3 cut(s) 427, 637, 638
BmiI GGNNCC 4 cut(s) 209, 543, 639, 664
BmrFI CCNGG 3 cut(s) 431, 641, 667
BmsI GCATC 3 cut(s) 898, 912, 948
BpiI GAAGAC 1 cut(s) 21
Bpu10I CCTNAGC 2 cut(s) 395, 884
Bpu14I TTCGAA 1 cut(s) 59
BpuMI CCSGG 2 cut(s) 641, 667
BsaHI GRCGYC 1 cut(s) 551
BsaJI CCNNGG 3 cut(s) 162, 468, 545
BsaXI ACNNNNNCTCC 6 cut(s) 79, 109, 121, 151, 437, 467
Bsc4I CCNNNNNNNGG 3 cut(s) 204, 355, 647
Bse1I ACTGG 1 cut(s) 862
Bse3DI GCAATG 2 cut(s) 414, 878
BseBI CCWGG 1 cut(s) 431
BseDI CCNNGG 3 cut(s) 162, 468, 545
BseGI GGATG 2 cut(s) 889, 963
BseLI CCNNNNNNNGG 3 cut(s) 204, 355, 647
BseMI GCAATG 2 cut(s) 414, 878
BseMII CTCAG 4 cut(s) 386, 732, 756, 921
BseNI ACTGG 1 cut(s) 862
BseRI GAGGAG 3 cut(s) 84, 126, 544
BseSI GKGCMC 1 cut(s) 641
BseX3I CGGCCG 1 cut(s) 642
Bsh1236I CGCG 2 cut(s) 505, 590
Bsh1285I CGRYCG 2 cut(s) 478, 645
BshFI GGCC 7 cut(s) 429, 494, 559, 639, 644, 861, 972
BshNI GGYRCC 1 cut(s) 541
BsiEI CGRYCG 2 cut(s) 478, 645
BsiHKCI CYCGRG 2 cut(s) 469, 508
BsiSI CCGG 4 cut(s) 560, 641, 666, 862
BslI CCNNNNNNNGG 3 cut(s) 204, 355, 647
BsnI GGCC 7 cut(s) 429, 494, 559, 639, 644, 861, 972
BsoBI CYCGRG 2 cut(s) 469, 508
Bsp119I TTCGAA 1 cut(s) 59
Bsp120I GGGCCC 1 cut(s) 637
Bsp1286I GDGCHC 1 cut(s) 641
Bsp143I GATC 1 cut(s) 733
Bsp19I CCATGG 1 cut(s) 162
BspANI GGCC 7 cut(s) 429, 494, 559, 639, 644, 861, 972
BspCNI CTCAG 4 cut(s) 387, 733, 757, 920
BspFNI CGCG 2 cut(s) 505, 590
BspLI GGNNCC 4 cut(s) 209, 543, 639, 664
BspMI ACCTGC 1 cut(s) 79
BspPI GGATC 1 cut(s) 741
BspT104I TTCGAA 1 cut(s) 59
BspT107I GGYRCC 1 cut(s) 541
BsrBI CCGCTC 1 cut(s) 255
BsrDI GCAATG 2 cut(s) 414, 878
BsrI ACTGG 1 cut(s) 862
BssECI CCNNGG 3 cut(s) 162, 468, 545
BssMI GATC 1 cut(s) 733
BssNI GRCGYC 1 cut(s) 551
BssSI CACGAG 1 cut(s) 329
BssT1I CCWWGG 1 cut(s) 162
Bst2BI CACGAG 1 cut(s) 329
Bst2UI CCWGG 1 cut(s) 431
Bst4CI ACNGT 2 cut(s) 778, 839
Bst6I CTCTTC 2 cut(s) 240, 245
BstACI GRCGYC 1 cut(s) 551
BstAPI GCANNNNNTGC 1 cut(s) 173
BstBI TTCGAA 1 cut(s) 59
BstC8I GCNNGC 1 cut(s) 405
BstDEI CTNAG 7 cut(s) 101, 395, 741, 765, 884, 907, 946
BstDSI CCRYGG 1 cut(s) 162
BstF5I GGATG 2 cut(s) 889, 963
BstFNI CGCG 2 cut(s) 505, 590
BstH2I RGCGCY 1 cut(s) 395
BstHHI GCGC 4 cut(s) 394, 507, 580, 592
BstKTI GATC 1 cut(s) 736
BstMBI GATC 1 cut(s) 733
BstMCI CGRYCG 2 cut(s) 478, 645
BstMWI GCNNNNNNNGC 6 cut(s) 173, 389, 400, 413, 464, 621
BstNI CCWGG 1 cut(s) 431
BstNSI RCATGY 1 cut(s) 78
BstSCI CCNGG 3 cut(s) 429, 639, 665
BstSLI GKGCMC 1 cut(s) 641
BstUI CGCG 2 cut(s) 505, 590
BstV2I GAAGAC 1 cut(s) 21
BstZI CGGCCG 1 cut(s) 642
BsuRI GGCC 7 cut(s) 429, 494, 559, 639, 644, 861, 972
BtgI CCRYGG 1 cut(s) 162
BtsCI GGATG 2 cut(s) 889, 963
BtsI GCAGTG 1 cut(s) 342
BtsIMutI CAGTG 1 cut(s) 342
BveI ACCTGC 1 cut(s) 79
Cac8I GCNNGC 1 cut(s) 405
CfoI GCGC 4 cut(s) 394, 507, 580, 592
Cfr13I GGNCC 3 cut(s) 427, 637, 638
Csp6I GTAC 3 cut(s) 571, 583, 1012
CviAII CATG 2 cut(s) 75, 163
CviQI GTAC 3 cut(s) 571, 583, 1012
DdeI CTNAG 7 cut(s) 101, 395, 741, 765, 884, 907, 946
DpnI GATC 1 cut(s) 735
DpnII GATC 1 cut(s) 733
DrdI GACNNNNNNGTC 1 cut(s) 994
DseDI GACNNNNNNGTC 1 cut(s) 994
EaeI YGGCCR 3 cut(s) 642, 859, 970
EagI CGGCCG 1 cut(s) 642
Eam1104I CTCTTC 2 cut(s) 240, 245
EarI CTCTTC 2 cut(s) 240, 245
EclXI CGGCCG 1 cut(s) 642
Eco130I CCWWGG 1 cut(s) 162
Eco147I AGGCCT 1 cut(s) 494
Eco24I GRGCYC 1 cut(s) 641
Eco47III AGCGCT 1 cut(s) 393
Eco52I CGGCCG 1 cut(s) 642
Eco57I CTGAAG 1 cut(s) 918
Eco88I CYCGRG 2 cut(s) 469, 508
EcoRII CCWGG 1 cut(s) 429
EcoT14I CCWWGG 1 cut(s) 162
EcoT38I GRGCYC 1 cut(s) 641
ErhI CCWWGG 1 cut(s) 162
FaeI CATG 2 cut(s) 78, 166
FaiI YATR 5 cut(s) 76, 164, 263, 633, 635
FatI CATG 2 cut(s) 74, 162
FauI CCCGC 2 cut(s) 412, 617
Fnu4HI GCNGC 3 cut(s) 414, 465, 702
FokI GGATG 2 cut(s) 876, 970
FriOI GRGCYC 1 cut(s) 641
Fsp4HI GCNGC 3 cut(s) 414, 465, 702
FspBI CTAG 2 cut(s) 83, 875
GlaI GCGC 4 cut(s) 393, 506, 579, 591
GluI GCNGC 3 cut(s) 414, 465, 702
HaeII RGCGCY 1 cut(s) 395
HaeIII GGCC 7 cut(s) 429, 494, 559, 639, 644, 861, 972
HapII CCGG 4 cut(s) 560, 641, 666, 862
HhaI GCGC 4 cut(s) 394, 507, 580, 592
Hin1I GRCGYC 1 cut(s) 551
Hin1II CATG 2 cut(s) 78, 166
Hin6I GCGC 4 cut(s) 392, 505, 578, 590
HinP1I GCGC 4 cut(s) 392, 505, 578, 590
HinfI GANTC 6 cut(s) 38, 43, 48, 314, 657, 995
HpaII CCGG 4 cut(s) 560, 641, 666, 862
HphI GGTGA 1 cut(s) 221
Hpy166II GTNNAC 1 cut(s) 80
Hpy188I TCNGA 8 cut(s) 313, 387, 445, 656, 662, 684, 733, 742
Hpy188III TCNNGA 2 cut(s) 376, 893
Hpy8I GTNNAC 1 cut(s) 80
Hpy99I CGWCG 6 cut(s) 505, 523, 526, 529, 556, 650
HpyAV CCTTC 7 cut(s) 298, 316, 373, 505, 603, 790, 911
HpyCH4III ACNGT 2 cut(s) 778, 839
HpyCH4IV ACGT 1 cut(s) 551
HpyCH4V TGCA 3 cut(s) 74, 790, 903
HpyF10VI GCNNNNNNNGC 6 cut(s) 173, 389, 400, 413, 464, 621
HpyF3I CTNAG 7 cut(s) 101, 395, 741, 765, 884, 907, 946
HpySE526I ACGT 1 cut(s) 551
Hsp92I GRCGYC 1 cut(s) 551
Hsp92II CATG 2 cut(s) 78, 166
HspAI GCGC 4 cut(s) 392, 505, 578, 590
Kzo9I GATC 1 cut(s) 733
LmnI GCTCC 4 cut(s) 189, 260, 308, 662
LweI GCATC 3 cut(s) 898, 912, 948
MaeI CTAG 2 cut(s) 83, 875
MaeII ACGT 1 cut(s) 551
MaeIII GTNAC 1 cut(s) 533
MalI GATC 1 cut(s) 735
MbiI CCGCTC 1 cut(s) 255
MboI GATC 1 cut(s) 733
MboII GAAGA 7 cut(s) 26, 32, 227, 232, 507, 671, 924
MhlI GDGCHC 1 cut(s) 641
MlsI TGGCCA 1 cut(s) 972
MluCI AATT 3 cut(s) 55, 951, 977
MluNI TGGCCA 1 cut(s) 972
MlyI GAGTC 2 cut(s) 666, 1004
MmeI TCCRAC 5 cut(s) 211, 468, 634, 640, 821
Mox20I TGGCCA 1 cut(s) 972
MscI TGGCCA 1 cut(s) 972
MslI CAYNNNNRTG 1 cut(s) 73
Msp20I TGGCCA 1 cut(s) 972
MspI CCGG 4 cut(s) 560, 641, 666, 862
MspR9I CCNGG 3 cut(s) 431, 641, 667
MvaI CCWGG 1 cut(s) 431
MvnI CGCG 2 cut(s) 505, 590
MwoI GCNNNNNNNGC 6 cut(s) 173, 389, 400, 413, 464, 621
NciI CCSGG 2 cut(s) 641, 667
NcoI CCATGG 1 cut(s) 162
NdeII GATC 1 cut(s) 733
NlaIII CATG 2 cut(s) 78, 166
NlaIV GGNNCC 4 cut(s) 209, 543, 639, 664
NmeAIII GCCGAG 1 cut(s) 570
NspI RCATGY 1 cut(s) 78
NspV TTCGAA 1 cut(s) 59
PaqCI CACCTGC 1 cut(s) 79
PceI AGGCCT 1 cut(s) 494
PcsI WCGNNNNNNNCGW 2 cut(s) 515, 524
PfeI GAWTC 4 cut(s) 38, 43, 48, 314
PkrI GCNGC 3 cut(s) 415, 466, 703
PleI GAGTC 2 cut(s) 665, 1003
PpsI GAGTC 2 cut(s) 665, 1003
Psp6I CCWGG 1 cut(s) 429
PspGI CCWGG 1 cut(s) 429
PspN4I GGNNCC 4 cut(s) 209, 543, 639, 664
PspOMI GGGCCC 1 cut(s) 637
PspPI GGNCC 3 cut(s) 427, 637, 638
RsaI GTAC 3 cut(s) 572, 584, 1013
RsaNI GTAC 3 cut(s) 571, 583, 1012
RseI CAYNNNNRTG 1 cut(s) 73
SatI GCNGC 3 cut(s) 414, 465, 702
Sau3AI GATC 1 cut(s) 733
Sau96I GGNCC 3 cut(s) 427, 637, 638
SchI GAGTC 2 cut(s) 666, 1004
ScrFI CCNGG 3 cut(s) 431, 641, 667
SduI GDGCHC 1 cut(s) 641
SetI ASST 9 cut(s) 30, 73, 127, 297, 330, 360, 375, 554, 913
SfaNI GCATC 3 cut(s) 898, 912, 948
SfuI TTCGAA 1 cut(s) 59
SmiMI CAYNNNNRTG 1 cut(s) 73
Sse9I AATT 3 cut(s) 55, 951, 977
SseBI AGGCCT 1 cut(s) 494
SspMI CTAG 2 cut(s) 83, 875
StuI AGGCCT 1 cut(s) 494
StyD4I CCNGG 3 cut(s) 429, 639, 665
StyI CCWWGG 1 cut(s) 162
TaaI ACNGT 2 cut(s) 778, 839
TaiI ACGT 1 cut(s) 554
TaqI TCGA 7 cut(s) 41, 46, 51, 59, 527, 554, 671
TaqII GACCGA 1 cut(s) 726
TasI AATT 3 cut(s) 55, 951, 977
TauI GCSGC 3 cut(s) 416, 467, 704
TfiI GAWTC 4 cut(s) 38, 43, 48, 314
TscAI CASTG 1 cut(s) 342
TspRI CASTG 1 cut(s) 342
XapI RAATTY 1 cut(s) 55
XceI RCATGY 1 cut(s) 78
XcmI CCANNNNNNNNNTGG 1 cut(s) 160
XspI CTAG 2 cut(s) 83, 875
ZraI GACGTC 1 cut(s) 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.