Rroxscaffold_164G00436100

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000164
OG0000368
Physical Location & Seq
Forward (+)
86108 .. 89274
3167 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_164G00436100.1

Sequence Viewer

Length: 972 bp
ATGCCATTGAGAAATCCGGCCACCGTCGCCGCCGTGTTGTTCTTGTTCCTCTTGTTGATTCCGAGCTTCGCCTCCTCCGCCACCGGAGGCCACGTCGGCGGAAGCTTGTTCAAAAAATCCAAATCTTCGTCTTCGTCGCGGTCTTCTTCTTCTTCTTGGTCTTCGCACTCGTCGCGTCACTACTACGCGCCGCCGAATTATCACTCCACGCCGTCTCCTTCATCCTCGTCGGAATATGGCGGCGGTACGACGGTTATCGGTTTCGTGATTGTGTTGGGGGTTATCGTTTGTGTGTCAGCATTCTGCGAGTATTGTACGGCGGCGGAGAAGAGAAACGGTAACTGTGCCGGGGTTGGGAAACTAAGCGTGGTGAAGCTTCAGGTTGGTTTGATGGGCAAGGCGCAGTCACTCCAAAGGGATCTTAATCGAATTACTGAAACTGCAAATACTTCTACTCCAAAGGGTTTGAGCTATGTTTTGACAGGGGCAACGACAGCTTTGCTTCGGAATCTTGATCATTGCATCTCAAGCTATTCATCTGTTATACGAAAGTCCGAGATAGAGGATGCAGAGGAATGCTTCACACTATTTTCTTTGGAAGAGGCGGCTAAATTTGACGAAGTGACCCTTGCCAATGTGAACAACTTCAAAAATCGCTCAAAAAGCCAGTCACCTAAGGAAATCCACAAAGAATATATAGTGGTTACAATTCTGGTGGCTACAGATGGAGAACAGAAGTTGCCCACCATCAGTGGCACTCGTGACTTGAAGGAAGCATTACATAAACTTGGAGCCATTTCCTCAAGCAAAATAATGGCTGTAGAGGTCTTGTGGACTCCTCAACAAGAAAACGATACTTTGACTGAGAGGGAACTACTCAAAGGTTACCCAGATTTGAGGGGCTTTTATGAAGAAGCATATCAAGGGCCATATGAAGATCAGCAGCCGTTCTTAGGGGCAAATGGAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

323

Amino Acids

34.93

Weight (kDa)

7.04

Isoelectric Point (pI)

55.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1517 PF07466 121 - 300 1.7e-59 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54520
fragaria_vesca FvH4_4g09430 FvH4_5g29750 FvH4_6g03490 FvH4_6g03500 FvH4_6g03510 FvH4_6g03510 FvH4_6g03510 FvH4_6g03520 FvH4_6g03530 FvH4_6g03530 FvH4_6g03530
malus_domestica MD04G1220400.v1.1 MD12G1236800.v1.1
prunus_persica Prupe.6G339400_v2.0.a1 Prupe.6G339400_v2.0.a1
pyrus_communis pycom04g19510 pycom12g21790
rosa_chinensis RchiOBHm_Chr3g0451981 RchiOBHm_Chr3g0451991 RchiOBHm_Chr3g0452001 RchiOBHm_Chr3g0452011 RchiOBHm_Chr3g0452041 RchiOBHm_Chr3g0452111 RchiOBHm_Chr3g0452121
rosa_laevigata RLG00000009056 RLG00000025627 RLG00000025628 RLG00000025630 RLG00000025631 RLG00000025632 RLG00000035582
rosa_multiflora Rmu_co8213316.1_g000001 Rmu_co8226081.1_g000001 Rmu_co8290691.1_g000001 Rmu_sc0001358.1_g000002 Rmu_sc0001358.1_g000004 Rmu_sc0001358.1_g000008 Rmu_sc0001358.1_g000011 Rmu_sc0001448.1_g000001 Rmu_sc0001448.1_g000005 Rmu_sc0001448.1_g000009 Rmu_sc0001729.1_g000006 Rmu_sc0001729.1_g000012 Rmu_sc0001729.1_g000017
rosa_roxburghii Rroxscaffold_164G00436060 Rroxscaffold_164G00436070 Rroxscaffold_164G00436100 Rroxscaffold_164G00436110 Rroxscaffold_164G00436120 Rroxscaffold_164G00436130 Rroxscaffold_4G00296230 Rroxscaffold_6G00389530 Rroxscaffold_6G00429160 Rroxscaffold_6G00429170 Rroxscaffold_6G00429200 Rroxscaffold_6G00429220 Rroxscaffold_6G00429240
rosa_rugosa Rorug01G0052400 Rorug01G0052500 Rorug02G0637900 Rorug02G0637900 Rorug02G0638000 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638200 Rorug02G0638300 Rorug02G0638400 Rorug04G0037400
rosa_samantha Rh2DG349300 Rh3AG039600 Rh3AG039700 Rh3AG039800 Rh3AG039900 Rh3AG040200 Rh3AG040300 Rh3BG041100 Rh3BG041200 Rh3BG041300 Rh3BG041500 Rh3BG041700 Rh3BG041800 Rh3CG039500 Rh3CG039600 Rh3CG039700 Rh3CG039800 Rh3CG040000 Rh3CG040200 Rh3DG040200 Rh3DG040400 Rh3DG040500 Rh3DG041000 Rh3DG041100 Rh4BG107500 Rh6BG085400 Rh6DG400800
rosa_wichuraiana Rw0G023520 Rw3G002980 Rw3G002990 Rw3G003010 Rw3G003030 Rw3G003040 Rw3G003060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 139, 175, 188
AclWI GGATC 1 cut(s) 426
AcoI YGGCCR 1 cut(s) 18
AcsI RAATTY 1 cut(s) 611
AcuI CTGAAG 1 cut(s) 362
AfaI GTAC 2 cut(s) 247, 316
AfiI CCNNNNNNNGG 2 cut(s) 354, 953
AgsI TTSAA 3 cut(s) 112, 649, 769
AjiI CACGTC 1 cut(s) 94
AluBI AGCT 6 cut(s) 66, 105, 376, 471, 497, 531
AluI AGCT 6 cut(s) 66, 105, 376, 471, 497, 531
Alw26I GTCTC 1 cut(s) 219
AlwI GGATC 1 cut(s) 426
AoxI GGCC 3 cut(s) 18, 88, 926
ApeKI GCWGC 1 cut(s) 943
ApoI RAATTY 1 cut(s) 611
ArsI GACNNNNNNTTYG 2 cut(s) 653, 685
Asp700I GAANNNNTTC 1 cut(s) 644
AspLEI GCGC 2 cut(s) 190, 403
AspS9I GGNCC 1 cut(s) 926
AsuC2I CCSGG 1 cut(s) 349
AsuHPI GGTGA 2 cut(s) 382, 663
AxyI CCTNAGG 1 cut(s) 675
BaeI ACNNNNGTAYC 2 cut(s) 237, 270
BauI CACGAG 1 cut(s) 759
BbsI GAAGAC 3 cut(s) 123, 135, 153
BbvI GCAGC 1 cut(s) 955
BccI CCATC 3 cut(s) 385, 719, 755
BceAI ACGGC 4 cut(s) 17, 196, 333, 931
BcgI CGANNNNNNTGC 2 cut(s) 481, 515
BclI TGATCA 1 cut(s) 514
BcnI CCSGG 1 cut(s) 349
BcoDI GTCTC 1 cut(s) 219
BfmI CTRYAG 2 cut(s) 720, 819
BglI GCCNNNNNGGC 1 cut(s) 96
BisI GCNGC 6 cut(s) 30, 191, 241, 321, 606, 944
BlsI GCNGC 6 cut(s) 31, 192, 242, 322, 607, 945
Bme1390I CCNGG 1 cut(s) 349
BmgBI CACGTC 1 cut(s) 94
BmgT120I GGNCC 1 cut(s) 926
BmiI GGNNCC 1 cut(s) 793
BmrFI CCNGG 1 cut(s) 349
BmsI GCATC 2 cut(s) 531, 556
BpiI GAAGAC 3 cut(s) 123, 135, 153
BpuEI CTTGAG 2 cut(s) 511, 787
BpuMI CCSGG 1 cut(s) 349
BsaBI GATNNNNATC 1 cut(s) 423
BsaJI CCNNGG 1 cut(s) 348
BsaWI WCCGGW 1 cut(s) 83
BsaXI ACNNNNNCTCC 6 cut(s) 78, 108, 199, 229, 439, 469
Bsc4I CCNNNNNNNGG 2 cut(s) 354, 953
Bse1I ACTGG 1 cut(s) 667
Bse21I CCTNAGG 1 cut(s) 675
Bse3DI GCAATG 1 cut(s) 517
Bse8I GATNNNNATC 1 cut(s) 423
BseDI CCNNGG 1 cut(s) 348
BseGI GGATG 2 cut(s) 221, 571
BseJI GATNNNNATC 1 cut(s) 423
BseLI CCNNNNNNNGG 2 cut(s) 354, 953
BseMI GCAATG 1 cut(s) 517
BseMII CTCAG 1 cut(s) 855
BseNI ACTGG 1 cut(s) 667
BseRI GAGGAG 2 cut(s) 64, 828
BseXI GCAGC 1 cut(s) 955
Bsh1236I CGCG 3 cut(s) 139, 175, 188
BshFI GGCC 3 cut(s) 20, 90, 928
BsiSI CCGG 3 cut(s) 17, 84, 348
BslI CCNNNNNNNGG 2 cut(s) 354, 953
BsmAI GTCTC 1 cut(s) 219
BsmBI CGTCTC 1 cut(s) 219
BsmI GAATGC 2 cut(s) 299, 581
BsnI GGCC 3 cut(s) 20, 90, 928
Bsp143I GATC 3 cut(s) 418, 514, 937
BspANI GGCC 3 cut(s) 20, 90, 928
BspCNI CTCAG 1 cut(s) 856
BspFNI CGCG 3 cut(s) 139, 175, 188
BspLI GGNNCC 1 cut(s) 793
BspPI GGATC 1 cut(s) 426
BsrDI GCAATG 1 cut(s) 517
BsrI ACTGG 1 cut(s) 667
BssECI CCNNGG 1 cut(s) 348
BssMI GATC 3 cut(s) 418, 514, 937
BssSI CACGAG 1 cut(s) 759
Bst2BI CACGAG 1 cut(s) 759
Bst4CI ACNGT 4 cut(s) 25, 253, 338, 344
Bst6I CTCTTC 2 cut(s) 323, 594
BstDEI CTNAG 4 cut(s) 362, 675, 864, 952
BstEII GGTNACC 1 cut(s) 884
BstF5I GGATG 2 cut(s) 221, 571
BstFNI CGCG 3 cut(s) 139, 175, 188
BstHHI GCGC 2 cut(s) 190, 403
BstKTI GATC 3 cut(s) 421, 517, 940
BstMAI GTCTC 1 cut(s) 219
BstMBI GATC 3 cut(s) 418, 514, 937
BstMWI GCNNNNNNNGC 7 cut(s) 26, 77, 96, 172, 494, 528, 663
BstPI GGTNACC 1 cut(s) 884
BstSCI CCNGG 1 cut(s) 347
BstSFI CTRYAG 2 cut(s) 720, 819
BstUI CGCG 3 cut(s) 139, 175, 188
BstV1I GCAGC 1 cut(s) 955
BstV2I GAAGAC 3 cut(s) 123, 135, 153
BstX2I RGATCY 1 cut(s) 418
BstYI RGATCY 1 cut(s) 418
Bsu36I CCTNAGG 1 cut(s) 675
BsuRI GGCC 3 cut(s) 20, 90, 928
BtrI CACGTC 1 cut(s) 94
BtsCI GGATG 2 cut(s) 221, 571
BtsIMutI CAGTG 1 cut(s) 757
CfoI GCGC 2 cut(s) 190, 403
Cfr13I GGNCC 1 cut(s) 926
CseI GACGC 1 cut(s) 164
Csp6I GTAC 2 cut(s) 246, 315
CspCI CAANNNNNGTGG 2 cut(s) 696, 731
CviQI GTAC 2 cut(s) 246, 315
DdeI CTNAG 4 cut(s) 362, 675, 864, 952
DpnI GATC 3 cut(s) 420, 516, 939
DpnII GATC 3 cut(s) 418, 514, 937
EaeI YGGCCR 1 cut(s) 18
Eam1104I CTCTTC 2 cut(s) 323, 594
EarI CTCTTC 2 cut(s) 323, 594
EciI GGCGGA 3 cut(s) 67, 114, 338
Eco57I CTGAAG 1 cut(s) 362
Eco81I CCTNAGG 1 cut(s) 675
Eco91I GGTNACC 1 cut(s) 884
EcoO65I GGTNACC 1 cut(s) 884
Esp3I CGTCTC 1 cut(s) 219
FalI AAGNNNNNCTT 2 cut(s) 612, 644
FauNDI CATATG 1 cut(s) 931
FbaI TGATCA 1 cut(s) 514
Fnu4HI GCNGC 6 cut(s) 30, 191, 241, 321, 606, 944
FokI GGATG 2 cut(s) 208, 578
Fsp4HI GCNGC 6 cut(s) 30, 191, 241, 321, 606, 944
GlaI GCGC 2 cut(s) 189, 402
GluI GCNGC 6 cut(s) 30, 191, 241, 321, 606, 944
HaeIII GGCC 3 cut(s) 20, 90, 928
HapII CCGG 3 cut(s) 17, 84, 348
HgaI GACGC 1 cut(s) 164
HhaI GCGC 2 cut(s) 190, 403
Hin6I GCGC 2 cut(s) 188, 401
HinP1I GCGC 2 cut(s) 188, 401
HindIII AAGCTT 2 cut(s) 103, 374
HinfI GANTC 3 cut(s) 58, 508, 835
HpaII CCGG 3 cut(s) 17, 84, 348
HphI GGTGA 2 cut(s) 382, 663
Hpy166II GTNNAC 2 cut(s) 640, 834
Hpy188I TCNGA 4 cut(s) 63, 232, 507, 556
Hpy188III TCNNGA 3 cut(s) 265, 512, 761
Hpy8I GTNNAC 2 cut(s) 640, 834
Hpy99I CGWCG 6 cut(s) 29, 98, 139, 175, 232, 253
HpyAV CCTTC 2 cut(s) 228, 763
HpyCH4III ACNGT 4 cut(s) 25, 253, 338, 344
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 3 cut(s) 443, 522, 569
HpyF10VI GCNNNNNNNGC 7 cut(s) 26, 77, 96, 172, 494, 528, 663
HpyF3I CTNAG 4 cut(s) 362, 675, 864, 952
HpySE526I ACGT 1 cut(s) 93
HspAI GCGC 2 cut(s) 188, 401
Ksp22I TGATCA 1 cut(s) 514
Kzo9I GATC 3 cut(s) 418, 514, 937
LmnI GCTCC 1 cut(s) 791
LpnPI CCDG 8 cut(s) 30, 97, 361, 365, 468, 680, 698, 903
Lsp1109I GCAGC 1 cut(s) 955
LweI GCATC 2 cut(s) 531, 556
MaeII ACGT 1 cut(s) 93
MaeIII GTNAC 8 cut(s) 176, 338, 405, 622, 669, 703, 761, 884
MalI GATC 3 cut(s) 420, 516, 939
MboI GATC 3 cut(s) 418, 514, 937
MflI RGATCY 1 cut(s) 418
MluCI AATT 4 cut(s) 196, 429, 611, 708
MlyI GAGTC 1 cut(s) 829
MmeI TCCRAC 1 cut(s) 210
MroXI GAANNNNTTC 1 cut(s) 644
MseI TTAA 1 cut(s) 423
MspI CCGG 3 cut(s) 17, 84, 348
MspR9I CCNGG 1 cut(s) 349
Mva1269I GAATGC 2 cut(s) 299, 581
MvnI CGCG 3 cut(s) 139, 175, 188
MwoI GCNNNNNNNGC 7 cut(s) 26, 77, 96, 172, 494, 528, 663
NciI CCSGG 1 cut(s) 349
NdeI CATATG 1 cut(s) 931
NdeII GATC 3 cut(s) 418, 514, 937
NlaIV GGNNCC 1 cut(s) 793
NmuCI GTSAC 5 cut(s) 176, 405, 622, 669, 761
PctI GAATGC 2 cut(s) 299, 581
PdmI GAANNNNTTC 1 cut(s) 644
PfeI GAWTC 2 cut(s) 58, 508
PkrI GCNGC 6 cut(s) 31, 192, 242, 322, 607, 945
PleI GAGTC 1 cut(s) 829
PpsI GAGTC 1 cut(s) 829
PspEI GGTNACC 1 cut(s) 884
PspN4I GGNNCC 1 cut(s) 793
PspPI GGNCC 1 cut(s) 926
PsuI RGATCY 1 cut(s) 418
RsaI GTAC 2 cut(s) 247, 316
RsaNI GTAC 2 cut(s) 246, 315
SaqAI TTAA 1 cut(s) 423
SatI GCNGC 6 cut(s) 30, 191, 241, 321, 606, 944
Sau3AI GATC 3 cut(s) 418, 514, 937
Sau96I GGNCC 1 cut(s) 926
SchI GAGTC 1 cut(s) 829
ScrFI CCNGG 1 cut(s) 349
SfaNI GCATC 2 cut(s) 531, 556
SfcI CTRYAG 2 cut(s) 720, 819
SmlI CTYRAG 2 cut(s) 526, 802
SmoI CTYRAG 2 cut(s) 526, 802
Sse9I AATT 4 cut(s) 196, 429, 611, 708
StyD4I CCNGG 1 cut(s) 347
TaaI ACNGT 4 cut(s) 25, 253, 338, 344
TaiI ACGT 1 cut(s) 96
TaqI TCGA 1 cut(s) 427
TasI AATT 4 cut(s) 196, 429, 611, 708
TauI GCSGC 5 cut(s) 32, 193, 243, 323, 608
TfiI GAWTC 2 cut(s) 58, 508
Tru1I TTAA 1 cut(s) 423
Tru9I TTAA 1 cut(s) 423
TscAI CASTG 1 cut(s) 757
TseFI GTSAC 5 cut(s) 176, 405, 622, 669, 761
TseI GCWGC 1 cut(s) 943
Tsp45I GTSAC 5 cut(s) 176, 405, 622, 669, 761
TspDTI ATGAA 4 cut(s) 210, 525, 924, 948
TspRI CASTG 1 cut(s) 757
XapI RAATTY 1 cut(s) 611
XmnI GAANNNNTTC 1 cut(s) 644
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.