Rmu_co8226081.1_g000001

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8226081.1
OG0000368
Physical Location & Seq
Forward (+)
1 .. 647
647 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8226081.1_g000001.1.cds

Sequence Viewer

Length: 647 bp
ttctcaagggactgaacacacctgcagtagagaacccaccatttgatgctatcttcaatgaaacattctcgaacgctctcaagggactcaaaatacctgcaaaagagaatcctaacccacttgaggctatcttcaatgaaacattagcgagtgctctcaaggtactcaagacacctgccatggctgccgtgttgttgagtttgttattgacgtttaactcgaactcgtcgtgggccgcctcgggtggtcgggtcgggggaagctcgttctcctcacgctcttcgtcgtcatcctcgtcagggtcgtcgtcttattcttcttcatcatcgtcgtatagatcttcaagttcttcaccttcgtattcgtacacgtcttcaagttcttcaccttcgtattcgtacacgtcttcaagttcttcaccttcgtattcgtcatattcaacgccttcatcatcgagttcttcgtctactacctcaatgtccgaggccgtaatttcgctgtgcataatccttctgattttggttctgttggctgtctgtgtgtcctctgtgggcgagggcgcgggcgcgggagctggcctggccgcatattctagtgttgctgcgaccttaaacgttgttaagcttcaggtattatggttggactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

214

Amino Acids

21.71

Weight (kDa)

7.91

Isoelectric Point (pI)

63.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54520
fragaria_vesca FvH4_4g09430 FvH4_5g29750 FvH4_6g03490 FvH4_6g03500 FvH4_6g03510 FvH4_6g03510 FvH4_6g03510 FvH4_6g03520 FvH4_6g03530 FvH4_6g03530 FvH4_6g03530
malus_domestica MD04G1220400.v1.1 MD12G1236800.v1.1
prunus_persica Prupe.6G339400_v2.0.a1 Prupe.6G339400_v2.0.a1
pyrus_communis pycom04g19510 pycom12g21790
rosa_chinensis RchiOBHm_Chr3g0451981 RchiOBHm_Chr3g0451991 RchiOBHm_Chr3g0452001 RchiOBHm_Chr3g0452011 RchiOBHm_Chr3g0452041 RchiOBHm_Chr3g0452111 RchiOBHm_Chr3g0452121
rosa_laevigata RLG00000009056 RLG00000025627 RLG00000025628 RLG00000025630 RLG00000025631 RLG00000025632 RLG00000035582
rosa_multiflora Rmu_co8213316.1_g000001 Rmu_co8226081.1_g000001 Rmu_co8290691.1_g000001 Rmu_sc0001358.1_g000002 Rmu_sc0001358.1_g000004 Rmu_sc0001358.1_g000008 Rmu_sc0001358.1_g000011 Rmu_sc0001448.1_g000001 Rmu_sc0001448.1_g000005 Rmu_sc0001448.1_g000009 Rmu_sc0001729.1_g000006 Rmu_sc0001729.1_g000012 Rmu_sc0001729.1_g000017
rosa_roxburghii Rroxscaffold_164G00436060 Rroxscaffold_164G00436070 Rroxscaffold_164G00436100 Rroxscaffold_164G00436110 Rroxscaffold_164G00436120 Rroxscaffold_164G00436130 Rroxscaffold_4G00296230 Rroxscaffold_6G00389530 Rroxscaffold_6G00429160 Rroxscaffold_6G00429170 Rroxscaffold_6G00429200 Rroxscaffold_6G00429220 Rroxscaffold_6G00429240
rosa_rugosa Rorug01G0052400 Rorug01G0052500 Rorug02G0637900 Rorug02G0637900 Rorug02G0638000 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638200 Rorug02G0638300 Rorug02G0638400 Rorug04G0037400
rosa_samantha Rh2DG349300 Rh3AG039600 Rh3AG039700 Rh3AG039800 Rh3AG039900 Rh3AG040200 Rh3AG040300 Rh3BG041100 Rh3BG041200 Rh3BG041300 Rh3BG041500 Rh3BG041700 Rh3BG041800 Rh3CG039500 Rh3CG039600 Rh3CG039700 Rh3CG039800 Rh3CG040000 Rh3CG040200 Rh3DG040200 Rh3DG040400 Rh3DG040500 Rh3DG041000 Rh3DG041100 Rh4BG107500 Rh6BG085400 Rh6DG400800
rosa_wichuraiana Rw0G023520 Rw3G002980 Rw3G002990 Rw3G003010 Rw3G003030 Rw3G003040 Rw3G003060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 30, 183
Acc36I ACCTGC 3 cut(s) 30, 105, 183
AccI GTMKAC 1 cut(s) 466
AccII CGCG 2 cut(s) 562, 568
AciI CCGC 4 cut(s) 236, 562, 568, 584
AclI AACGTT 1 cut(s) 614
AcoI YGGCCR 1 cut(s) 581
AcuI CTGAAG 1 cut(s) 610
AfaI GTAC 3 cut(s) 164, 367, 400
AfiI CCNNNNNNNGG 2 cut(s) 123, 299
AflIII ACRYGT 2 cut(s) 368, 401
AgsI TTSAA 6 cut(s) 57, 135, 344, 377, 410, 440
AjiI CACGTC 2 cut(s) 371, 404
AjnI CCWGG 1 cut(s) 578
AluBI AGCT 3 cut(s) 263, 574, 624
AluI AGCT 3 cut(s) 263, 574, 624
Alw21I GWGCWC 1 cut(s) 156
Ama87I CYCGRG 1 cut(s) 240
AoxI GGCC 4 cut(s) 233, 485, 576, 581
ApeKI GCWGC 2 cut(s) 184, 601
AspLEI GCGC 2 cut(s) 562, 568
AspS9I GGNCC 1 cut(s) 233
AsuHPI GGTGA 3 cut(s) 344, 377, 410
AvaI CYCGRG 1 cut(s) 240
BbsI GAAGAC 2 cut(s) 365, 398
Bbv12I GWGCWC 1 cut(s) 156
BbvI GCAGC 2 cut(s) 171, 588
BceAI ACGGC 2 cut(s) 172, 472
BciT130I CCWGG 1 cut(s) 580
BfaI CTAG 1 cut(s) 593
BfmI CTRYAG 1 cut(s) 23
BfuAI ACCTGC 3 cut(s) 30, 105, 183
BglII AGATCT 1 cut(s) 337
BisI GCNGC 4 cut(s) 185, 236, 584, 602
BlsI GCNGC 4 cut(s) 186, 237, 585, 603
Bme1390I CCNGG 1 cut(s) 580
BmeT110I CYCGRG 1 cut(s) 240
BmgBI CACGTC 2 cut(s) 371, 404
BmgT120I GGNCC 1 cut(s) 233
BmrFI CCNGG 1 cut(s) 580
BmsI GCATC 1 cut(s) 36
BpiI GAAGAC 2 cut(s) 365, 398
BpuEI CTTGAG 4 cut(s) 64, 142, 142, 151
BsaJI CCNNGG 3 cut(s) 179, 239, 482
Bsc4I CCNNNNNNNGG 2 cut(s) 123, 299
BseBI CCWGG 1 cut(s) 580
BseDI CCNNGG 3 cut(s) 179, 239, 482
BseGI GGATG 1 cut(s) 289
BseLI CCNNNNNNNGG 2 cut(s) 123, 299
BseRI GAGGAG 1 cut(s) 261
BseXI GCAGC 2 cut(s) 171, 588
Bsh1236I CGCG 2 cut(s) 562, 568
BshFI GGCC 4 cut(s) 235, 487, 578, 583
BsiHKAI GWGCWC 1 cut(s) 156
BsiHKCI CYCGRG 1 cut(s) 240
BslFI GGGAC 2 cut(s) 23, 98
BslI CCNNNNNNNGG 2 cut(s) 123, 299
BsmFI GGGAC 2 cut(s) 23, 98
BsnI GGCC 4 cut(s) 235, 487, 578, 583
BsoBI CYCGRG 1 cut(s) 240
Bsp1286I GDGCHC 1 cut(s) 156
Bsp143I GATC 1 cut(s) 337
Bsp19I CCATGG 1 cut(s) 179
BspACI CCGC 4 cut(s) 236, 562, 568, 584
BspANI GGCC 4 cut(s) 235, 487, 578, 583
BspFNI CGCG 2 cut(s) 562, 568
BspMAI CTGCAG 1 cut(s) 27
BspMI ACCTGC 3 cut(s) 30, 105, 183
BspQI GCTCTTC 1 cut(s) 285
BssECI CCNNGG 3 cut(s) 179, 239, 482
BssMI GATC 1 cut(s) 337
BssT1I CCWWGG 1 cut(s) 179
Bst2UI CCWGG 1 cut(s) 580
Bst6I CTCTTC 1 cut(s) 285
BstC8I GCNNGC 2 cut(s) 564, 576
BstDSI CCRYGG 1 cut(s) 179
BstF5I GGATG 1 cut(s) 289
BstFNI CGCG 2 cut(s) 562, 568
BstHHI GCGC 2 cut(s) 562, 568
BstKTI GATC 1 cut(s) 340
BstMBI GATC 1 cut(s) 337
BstMWI GCNNNNNNNGC 2 cut(s) 184, 580
BstNI CCWGG 1 cut(s) 580
BstSCI CCNGG 1 cut(s) 578
BstSFI CTRYAG 1 cut(s) 23
BstUI CGCG 2 cut(s) 562, 568
BstV1I GCAGC 2 cut(s) 171, 588
BstV2I GAAGAC 2 cut(s) 365, 398
BstX2I RGATCY 1 cut(s) 337
BstYI RGATCY 1 cut(s) 337
BsuRI GGCC 4 cut(s) 235, 487, 578, 583
BtgI CCRYGG 1 cut(s) 179
BtrI CACGTC 2 cut(s) 371, 404
BtsCI GGATG 1 cut(s) 289
BveI ACCTGC 3 cut(s) 30, 105, 183
Cac8I GCNNGC 2 cut(s) 564, 576
CfoI GCGC 2 cut(s) 562, 568
Cfr13I GGNCC 1 cut(s) 233
Csp6I GTAC 3 cut(s) 163, 366, 399
CviAII CATG 1 cut(s) 180
CviQI GTAC 3 cut(s) 163, 366, 399
DpnI GATC 1 cut(s) 339
DpnII GATC 1 cut(s) 337
EaeI YGGCCR 1 cut(s) 581
Eam1104I CTCTTC 1 cut(s) 285
EarI CTCTTC 1 cut(s) 285
Eco130I CCWWGG 1 cut(s) 179
Eco57I CTGAAG 1 cut(s) 610
Eco88I CYCGRG 1 cut(s) 240
EcoRII CCWGG 1 cut(s) 578
EcoT14I CCWWGG 1 cut(s) 179
ErhI CCWWGG 1 cut(s) 179
FaeI CATG 1 cut(s) 183
FaiI YATR 6 cut(s) 181, 335, 435, 505, 588, 636
FaqI GGGAC 2 cut(s) 23, 98
FatI CATG 1 cut(s) 179
FauI CCCGC 2 cut(s) 555, 561
FblI GTMKAC 1 cut(s) 466
Fnu4HI GCNGC 4 cut(s) 185, 236, 584, 602
FokI GGATG 1 cut(s) 276
Fsp4HI GCNGC 4 cut(s) 185, 236, 584, 602
FspBI CTAG 1 cut(s) 593
GlaI GCGC 2 cut(s) 561, 567
GluI GCNGC 4 cut(s) 185, 236, 584, 602
HaeIII GGCC 4 cut(s) 235, 487, 578, 583
HhaI GCGC 2 cut(s) 562, 568
Hin1II CATG 1 cut(s) 183
Hin6I GCGC 2 cut(s) 560, 566
HinP1I GCGC 2 cut(s) 560, 566
HindIII AAGCTT 1 cut(s) 622
HinfI GANTC 2 cut(s) 86, 108
HphI GGTGA 3 cut(s) 344, 377, 410
Hpy166II GTNNAC 3 cut(s) 368, 401, 467
Hpy188I TCNGA 2 cut(s) 483, 515
Hpy188III TCNNGA 2 cut(s) 69, 168
Hpy8I GTNNAC 3 cut(s) 368, 401, 467
Hpy99I CGWCG 4 cut(s) 231, 288, 309, 333
HpyAV CCTTC 5 cut(s) 365, 398, 431, 455, 520
HpyCH4IV ACGT 4 cut(s) 211, 370, 403, 614
HpyCH4V TGCA 3 cut(s) 25, 100, 503
HpyF10VI GCNNNNNNNGC 2 cut(s) 184, 580
HpySE526I ACGT 4 cut(s) 211, 370, 403, 614
Hsp92II CATG 1 cut(s) 183
HspAI GCGC 2 cut(s) 560, 566
Kzo9I GATC 1 cut(s) 337
LguI GCTCTTC 1 cut(s) 285
LmnI GCTCC 1 cut(s) 571
LpnPI CCDG 8 cut(s) 35, 110, 188, 284, 560, 565, 592, 613
Lsp1109I GCAGC 2 cut(s) 171, 588
LweI GCATC 1 cut(s) 36
MaeI CTAG 1 cut(s) 593
MaeII ACGT 4 cut(s) 211, 370, 403, 614
MalI GATC 1 cut(s) 339
MboI GATC 1 cut(s) 337
MflI RGATCY 1 cut(s) 337
MhlI GDGCHC 1 cut(s) 156
MluCI AATT 1 cut(s) 491
MlyI GAGTC 1 cut(s) 80
MmeI TCCRAC 1 cut(s) 620
MnlI CCTC 8 cut(s) 117, 249, 282, 303, 477, 483, 549, 555
MseI TTAA 3 cut(s) 215, 610, 620
MspR9I CCNGG 1 cut(s) 580
MvaI CCWGG 1 cut(s) 580
MvnI CGCG 2 cut(s) 562, 568
MwoI GCNNNNNNNGC 2 cut(s) 184, 580
NcoI CCATGG 1 cut(s) 179
NdeII GATC 1 cut(s) 337
NlaIII CATG 1 cut(s) 183
PaqCI CACCTGC 2 cut(s) 30, 183
PciSI GCTCTTC 1 cut(s) 285
PcsI WCGNNNNNNNCGW 5 cut(s) 217, 226, 292, 301, 460
PfeI GAWTC 1 cut(s) 108
PkrI GCNGC 4 cut(s) 186, 237, 585, 603
PleI GAGTC 1 cut(s) 80
PpsI GAGTC 1 cut(s) 80
Psp1406I AACGTT 1 cut(s) 614
Psp6I CCWGG 1 cut(s) 578
PspGI CCWGG 1 cut(s) 578
PspPI GGNCC 1 cut(s) 233
PstI CTGCAG 1 cut(s) 27
PsuI RGATCY 1 cut(s) 337
RsaI GTAC 3 cut(s) 164, 367, 400
RsaNI GTAC 3 cut(s) 163, 366, 399
SapI GCTCTTC 1 cut(s) 285
SaqAI TTAA 3 cut(s) 215, 610, 620
SatI GCNGC 4 cut(s) 185, 236, 584, 602
Sau3AI GATC 1 cut(s) 337
Sau96I GGNCC 1 cut(s) 233
SchI GAGTC 1 cut(s) 80
ScrFI CCNGG 1 cut(s) 580
SduI GDGCHC 1 cut(s) 156
SfaNI GCATC 1 cut(s) 36
SfcI CTRYAG 1 cut(s) 23
SmlI CTYRAG 5 cut(s) 4, 79, 121, 157, 166
SmoI CTYRAG 5 cut(s) 4, 79, 121, 157, 166
Sse9I AATT 1 cut(s) 491
SsiI CCGC 4 cut(s) 236, 562, 568, 584
SspMI CTAG 1 cut(s) 593
StyD4I CCNGG 1 cut(s) 578
StyI CCWWGG 1 cut(s) 179
TaiI ACGT 4 cut(s) 214, 373, 406, 617
TaqI TCGA 3 cut(s) 70, 220, 454
TasI AATT 1 cut(s) 491
TauI GCSGC 2 cut(s) 238, 586
TfiI GAWTC 1 cut(s) 108
Tru1I TTAA 3 cut(s) 215, 610, 620
Tru9I TTAA 3 cut(s) 215, 610, 620
TseI GCWGC 2 cut(s) 184, 601
TspDTI ATGAA 4 cut(s) 74, 152, 311, 437
XmiI GTMKAC 1 cut(s) 466
XspI CTAG 1 cut(s) 593
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.