Rorug02G0638000

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000368
Physical Location & Seq
Reverse (-)
75100409 .. 75101471
1063 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0638000.1

Sequence Viewer

Length: 756 bp
ATGGGAACGCAGCAAAGCCCAATTGTTTCTTCCCTCCCACCCCTCCCAATCCTCTTCTCCTTCTTCTTCACCGTCTACCTCATCGCCTACTTCCTCGTCTTCCGCTCCTGGAGCCCCAAGATCCGACCCGAAGCCTCCAGCTGCCTCATCTCCCTCGCCCACGGCACCCCCGCCGTCTTCTTCTCCTCCTTCGCCATTCTCTCCGATCCCTCCACCGGCTTCGCCTCCCCCAACACGCGCCTCCAGAACTCCGTCCTCGATTTCAGCGTCGCCTATTTCCTCATGGATCTTCTCCACTACCTCCTCTTCTTCCCCGGCGACGTCCTCTTCATCGGCCACCACCTCGCCACGCTCTTCGTCTTCCTCACCTGCCGCTACGTCGCCTCCCGCGGCGCCTTCGCCGTCCTCACGCTCCTCATCCTCGCCGAGGTCACCAGCCTCTGCCAGAACGTCTGGACGCTCGCCAACGCGCGCCGGAGGGACGTGGAGTTCGCCGCCAAGGTGTATGATTTTCTGTCCCCTCCGTTTTATGTCCTCTATTCGATTGTGAGGGGCTTTGTTGGCCCTTATTTCGTGTATAGAATGTGTGCTTTCTATGCTAGCGGCGCCGCCGAGGGCTTGATTCCCCGGTGGGTTTGGGTTTCGTGGATTGTGGTGGTAATGTCTGCTATTTCTGTTAGCATTATGTGGATTTTGAATCTTTGGGTGGAGTTGTATAGAGATAGGAGTGGCAAGTTGGAAAAGAAAGTTACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

251

Amino Acids

28.4

Weight (kDa)

9.08

Isoelectric Point (pI)

42.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TRAM_LAG1_CLN8 PF03798 46 - 235 1e-18 TLC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54520
fragaria_vesca FvH4_4g09430 FvH4_5g29750 FvH4_6g03490 FvH4_6g03500 FvH4_6g03510 FvH4_6g03510 FvH4_6g03510 FvH4_6g03520 FvH4_6g03530 FvH4_6g03530 FvH4_6g03530
malus_domestica MD04G1220400.v1.1 MD12G1236800.v1.1
prunus_persica Prupe.6G339400_v2.0.a1 Prupe.6G339400_v2.0.a1
pyrus_communis pycom04g19510 pycom12g21790
rosa_chinensis RchiOBHm_Chr3g0451981 RchiOBHm_Chr3g0451991 RchiOBHm_Chr3g0452001 RchiOBHm_Chr3g0452011 RchiOBHm_Chr3g0452041 RchiOBHm_Chr3g0452111 RchiOBHm_Chr3g0452121
rosa_laevigata RLG00000009056 RLG00000025627 RLG00000025628 RLG00000025630 RLG00000025631 RLG00000025632 RLG00000035582
rosa_multiflora Rmu_co8213316.1_g000001 Rmu_co8226081.1_g000001 Rmu_co8290691.1_g000001 Rmu_sc0001358.1_g000002 Rmu_sc0001358.1_g000004 Rmu_sc0001358.1_g000008 Rmu_sc0001358.1_g000011 Rmu_sc0001448.1_g000001 Rmu_sc0001448.1_g000005 Rmu_sc0001448.1_g000009 Rmu_sc0001729.1_g000006 Rmu_sc0001729.1_g000012 Rmu_sc0001729.1_g000017
rosa_roxburghii Rroxscaffold_164G00436060 Rroxscaffold_164G00436070 Rroxscaffold_164G00436100 Rroxscaffold_164G00436110 Rroxscaffold_164G00436120 Rroxscaffold_164G00436130 Rroxscaffold_4G00296230 Rroxscaffold_6G00389530 Rroxscaffold_6G00429160 Rroxscaffold_6G00429170 Rroxscaffold_6G00429200 Rroxscaffold_6G00429220 Rroxscaffold_6G00429240
rosa_rugosa Rorug01G0052400 Rorug01G0052500 Rorug02G0637900 Rorug02G0637900 Rorug02G0638000 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638200 Rorug02G0638300 Rorug02G0638400 Rorug04G0037400
rosa_samantha Rh2DG349300 Rh3AG039600 Rh3AG039700 Rh3AG039800 Rh3AG039900 Rh3AG040200 Rh3AG040300 Rh3BG041100 Rh3BG041200 Rh3BG041300 Rh3BG041500 Rh3BG041700 Rh3BG041800 Rh3CG039500 Rh3CG039600 Rh3CG039700 Rh3CG039800 Rh3CG040000 Rh3CG040200 Rh3DG040200 Rh3DG040400 Rh3DG040500 Rh3DG041000 Rh3DG041100 Rh4BG107500 Rh6BG085400 Rh6DG400800
rosa_wichuraiana Rw0G023520 Rw3G002980 Rw3G002990 Rw3G003010 Rw3G003030 Rw3G003040 Rw3G003060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 377
AatII GACGTC 1 cut(s) 324
Acc36I ACCTGC 1 cut(s) 377
AccB1I GGYRCC 3 cut(s) 164, 392, 605
AccBSI CCGCTC 1 cut(s) 105
AccI GTMKAC 1 cut(s) 75
AccII CGCG 4 cut(s) 238, 390, 470, 472
AciI CCGC 8 cut(s) 103, 171, 373, 388, 390, 495, 603, 609
AclWI GGATC 3 cut(s) 115, 200, 294
AcoI YGGCCR 1 cut(s) 334
AcyI GRCGYC 3 cut(s) 321, 393, 606
AfiI CCNNNNNNNGG 2 cut(s) 215, 427
AgsI TTSAA 1 cut(s) 697
AjiI CACGTC 1 cut(s) 484
AjnI CCWGG 1 cut(s) 107
AjuI GAANNNNNNNTTGG 2 cut(s) 13, 45
AloI GAACNNNNNNTCC 2 cut(s) 473, 505
AluBI AGCT 1 cut(s) 141
AluI AGCT 1 cut(s) 141
AlwI GGATC 3 cut(s) 115, 200, 294
AlwNI CAGNNNCTG 1 cut(s) 441
AoxI GGCC 2 cut(s) 334, 562
ApeKI GCWGC 2 cut(s) 10, 141
ArsI GACNNNNNNTTYG 2 cut(s) 473, 505
AspLEI GCGC 5 cut(s) 240, 395, 472, 474, 608
AspS9I GGNCC 1 cut(s) 563
AsuC2I CCSGG 2 cut(s) 315, 628
AsuHPI GGTGA 3 cut(s) 61, 358, 424
AsuNHI GCTAGC 1 cut(s) 599
BanI GGYRCC 3 cut(s) 164, 392, 605
BanII GRGCYC 1 cut(s) 116
BbsI GAAGAC 3 cut(s) 91, 169, 352
BbvI GCAGC 2 cut(s) 22, 128
BceAI ACGGC 3 cut(s) 158, 178, 386
BciT130I CCWGG 1 cut(s) 109
BcnI CCSGG 2 cut(s) 315, 628
BfaI CTAG 1 cut(s) 600
BfoI RGCGCY 2 cut(s) 396, 609
BfuAI ACCTGC 1 cut(s) 377
BisI GCNGC 7 cut(s) 11, 142, 373, 391, 495, 604, 609
BlsI GCNGC 7 cut(s) 12, 143, 374, 392, 496, 605, 610
Bme1390I CCNGG 3 cut(s) 109, 315, 628
BmgBI CACGTC 1 cut(s) 484
BmgT120I GGNCC 1 cut(s) 563
BmiI GGNNCC 4 cut(s) 113, 166, 394, 607
BmrFI CCNGG 3 cut(s) 109, 315, 628
BmtI GCTAGC 1 cut(s) 603
BpiI GAAGAC 3 cut(s) 91, 169, 352
BpmI CTGGAG 3 cut(s) 121, 130, 227
BpuMI CCSGG 2 cut(s) 315, 628
BsaHI GRCGYC 3 cut(s) 321, 393, 606
BsaJI CCNNGG 7 cut(s) 160, 313, 388, 426, 498, 612, 626
BsaXI ACNNNNNCTCC 2 cut(s) 368, 398
Bsc4I CCNNNNNNNGG 2 cut(s) 215, 427
Bse118I RCCGGY 1 cut(s) 215
BseBI CCWGG 1 cut(s) 109
BseDI CCNNGG 7 cut(s) 160, 313, 388, 426, 498, 612, 626
BseGI GGATG 1 cut(s) 417
BseLI CCNNNNNNNGG 2 cut(s) 215, 427
BsePI GCGCGC 1 cut(s) 470
BseRI GAGGAG 3 cut(s) 175, 293, 404
BseXI GCAGC 2 cut(s) 22, 128
Bsh1236I CGCG 4 cut(s) 238, 390, 470, 472
BshFI GGCC 2 cut(s) 336, 564
BshNI GGYRCC 3 cut(s) 164, 392, 605
BsiSI CCGG 4 cut(s) 216, 315, 475, 628
BslFI GGGAC 2 cut(s) 494, 502
BslI CCNNNNNNNGG 2 cut(s) 215, 427
BsmFI GGGAC 2 cut(s) 494, 502
BsnI GGCC 2 cut(s) 336, 564
Bsp1286I GDGCHC 1 cut(s) 116
Bsp143I GATC 3 cut(s) 120, 205, 286
BspACI CCGC 8 cut(s) 103, 171, 373, 388, 390, 495, 603, 609
BspANI GGCC 2 cut(s) 336, 564
BspFNI CGCG 4 cut(s) 238, 390, 470, 472
BspLI GGNNCC 4 cut(s) 113, 166, 394, 607
BspMI ACCTGC 1 cut(s) 377
BspOI GCTAGC 1 cut(s) 603
BspPI GGATC 3 cut(s) 115, 200, 294
BspQI GCTCTTC 1 cut(s) 359
BspT107I GGYRCC 3 cut(s) 164, 392, 605
BsrBI CCGCTC 1 cut(s) 105
BsrFI RCCGGY 1 cut(s) 215
BssAI RCCGGY 1 cut(s) 215
BssECI CCNNGG 7 cut(s) 160, 313, 388, 426, 498, 612, 626
BssHII GCGCGC 1 cut(s) 470
BssMI GATC 3 cut(s) 120, 205, 286
BssNI GRCGYC 3 cut(s) 321, 393, 606
BssT1I CCWWGG 1 cut(s) 498
Bst2UI CCWGG 1 cut(s) 109
Bst4CI ACNGT 1 cut(s) 73
Bst6I CTCTTC 4 cut(s) 59, 311, 332, 359
BstACI GRCGYC 3 cut(s) 321, 393, 606
BstC8I GCNNGC 3 cut(s) 462, 472, 601
BstDSI CCRYGG 2 cut(s) 160, 388
BstEII GGTNACC 1 cut(s) 430
BstENI CCTNNNNNAGG 1 cut(s) 425
BstF5I GGATG 1 cut(s) 417
BstFNI CGCG 4 cut(s) 238, 390, 470, 472
BstH2I RGCGCY 2 cut(s) 396, 609
BstHHI GCGC 5 cut(s) 240, 395, 472, 474, 608
BstKTI GATC 3 cut(s) 123, 208, 289
BstMBI GATC 3 cut(s) 120, 205, 286
BstMWI GCNNNNNNNGC 4 cut(s) 111, 561, 596, 605
BstNI CCWGG 1 cut(s) 109
BstPI GGTNACC 1 cut(s) 430
BstSCI CCNGG 3 cut(s) 107, 313, 626
BstUI CGCG 4 cut(s) 238, 390, 470, 472
BstV1I GCAGC 2 cut(s) 22, 128
BstV2I GAAGAC 3 cut(s) 91, 169, 352
BstX2I RGATCY 2 cut(s) 120, 286
BstYI RGATCY 2 cut(s) 120, 286
BsuRI GGCC 2 cut(s) 336, 564
BtgI CCRYGG 2 cut(s) 160, 388
BtgZI GCGATG 1 cut(s) 67
BtrI CACGTC 1 cut(s) 484
BtsCI GGATG 1 cut(s) 417
BveI ACCTGC 1 cut(s) 377
Cac8I GCNNGC 3 cut(s) 462, 472, 601
CaiI CAGNNNCTG 1 cut(s) 441
CfoI GCGC 5 cut(s) 240, 395, 472, 474, 608
Cfr10I RCCGGY 1 cut(s) 215
Cfr13I GGNCC 1 cut(s) 563
Cfr42I CCGCGG 1 cut(s) 391
CseI GACGC 2 cut(s) 256, 466
CviAII CATG 1 cut(s) 283
DinI GGCGCC 2 cut(s) 394, 607
DpnI GATC 3 cut(s) 122, 207, 288
DpnII GATC 3 cut(s) 120, 205, 286
EaeI YGGCCR 1 cut(s) 334
Eam1104I CTCTTC 4 cut(s) 59, 311, 332, 359
EarI CTCTTC 4 cut(s) 59, 311, 332, 359
Eco130I CCWWGG 1 cut(s) 498
Eco24I GRGCYC 1 cut(s) 116
Eco91I GGTNACC 1 cut(s) 430
EcoNI CCTNNNNNAGG 1 cut(s) 425
EcoO65I GGTNACC 1 cut(s) 430
EcoRII CCWGG 1 cut(s) 107
EcoT14I CCWWGG 1 cut(s) 498
EcoT38I GRGCYC 1 cut(s) 116
EgeI GGCGCC 2 cut(s) 394, 607
EheI GGCGCC 2 cut(s) 394, 607
ErhI CCWWGG 1 cut(s) 498
FaeI CATG 1 cut(s) 286
FaiI YATR 8 cut(s) 284, 507, 531, 579, 597, 686, 717, 754
FaqI GGGAC 2 cut(s) 494, 502
FatI CATG 1 cut(s) 282
FauI CCCGC 2 cut(s) 178, 395
FblI GTMKAC 1 cut(s) 75
Fnu4HI GCNGC 7 cut(s) 11, 142, 373, 391, 495, 604, 609
FokI GGATG 1 cut(s) 404
FriOI GRGCYC 1 cut(s) 116
Fsp4HI GCNGC 7 cut(s) 11, 142, 373, 391, 495, 604, 609
FspBI CTAG 1 cut(s) 600
GlaI GCGC 5 cut(s) 239, 394, 471, 473, 607
GluI GCNGC 7 cut(s) 11, 142, 373, 391, 495, 604, 609
GsuI CTGGAG 3 cut(s) 121, 130, 227
HaeII RGCGCY 2 cut(s) 396, 609
HaeIII GGCC 2 cut(s) 336, 564
HapII CCGG 4 cut(s) 216, 315, 475, 628
HgaI GACGC 2 cut(s) 256, 466
HhaI GCGC 5 cut(s) 240, 395, 472, 474, 608
Hin1I GRCGYC 3 cut(s) 321, 393, 606
Hin1II CATG 1 cut(s) 286
Hin6I GCGC 5 cut(s) 238, 393, 470, 472, 606
HinP1I GCGC 5 cut(s) 238, 393, 470, 472, 606
HinfI GANTC 2 cut(s) 622, 697
HpaII CCGG 4 cut(s) 216, 315, 475, 628
HphI GGTGA 3 cut(s) 61, 358, 424
Hpy166II GTNNAC 1 cut(s) 76
Hpy188I TCNGA 2 cut(s) 125, 205
Hpy188III TCNNGA 2 cut(s) 244, 454
Hpy8I GTNNAC 1 cut(s) 76
Hpy99I CGWCG 3 cut(s) 272, 323, 383
HpyAV CCTTC 3 cut(s) 70, 199, 406
HpyCH4III ACNGT 1 cut(s) 73
HpyCH4IV ACGT 4 cut(s) 321, 378, 450, 483
HpyF10VI GCNNNNNNNGC 4 cut(s) 111, 561, 596, 605
HpySE526I ACGT 4 cut(s) 321, 378, 450, 483
Hsp92I GRCGYC 3 cut(s) 321, 393, 606
Hsp92II CATG 1 cut(s) 286
HspAI GCGC 5 cut(s) 238, 393, 470, 472, 606
KasI GGCGCC 2 cut(s) 392, 605
KspI CCGCGG 1 cut(s) 391
Kzo9I GATC 3 cut(s) 120, 205, 286
LguI GCTCTTC 1 cut(s) 359
LmnI GCTCC 3 cut(s) 110, 111, 417
Lsp1109I GCAGC 2 cut(s) 22, 128
MaeI CTAG 1 cut(s) 600
MaeII ACGT 4 cut(s) 321, 378, 450, 483
MaeIII GTNAC 2 cut(s) 430, 748
MalI GATC 3 cut(s) 122, 207, 288
MbiI CCGCTC 1 cut(s) 105
MboI GATC 3 cut(s) 120, 205, 286
MfeI CAATTG 1 cut(s) 21
MflI RGATCY 2 cut(s) 120, 286
MhlI GDGCHC 1 cut(s) 116
MluCI AATT 1 cut(s) 21
Mly113I GGCGCC 2 cut(s) 393, 606
MmeI TCCRAC 2 cut(s) 148, 717
MspA1I CMGCKG 2 cut(s) 141, 390
MspI CCGG 4 cut(s) 216, 315, 475, 628
MspR9I CCNGG 3 cut(s) 109, 315, 628
MunI CAATTG 1 cut(s) 21
MvaI CCWGG 1 cut(s) 109
MvnI CGCG 4 cut(s) 238, 390, 470, 472
MwoI GCNNNNNNNGC 4 cut(s) 111, 561, 596, 605
NarI GGCGCC 2 cut(s) 393, 606
NciI CCSGG 2 cut(s) 315, 628
NdeII GATC 3 cut(s) 120, 205, 286
NheI GCTAGC 1 cut(s) 599
NlaIII CATG 1 cut(s) 286
NlaIV GGNNCC 4 cut(s) 113, 166, 394, 607
NmeAIII GCCGAG 2 cut(s) 451, 637
NmuCI GTSAC 1 cut(s) 430
PaqCI CACCTGC 1 cut(s) 377
PauI GCGCGC 1 cut(s) 470
PciSI GCTCTTC 1 cut(s) 359
PcsI WCGNNNNNNNCGW 1 cut(s) 264
PfeI GAWTC 2 cut(s) 622, 697
PfoI TCCNGGA 1 cut(s) 107
PkrI GCNGC 7 cut(s) 12, 143, 374, 392, 496, 605, 610
PluTI GGCGCC 2 cut(s) 396, 609
Psp6I CCWGG 1 cut(s) 107
PspEI GGTNACC 1 cut(s) 430
PspGI CCWGG 1 cut(s) 107
PspN4I GGNNCC 4 cut(s) 113, 166, 394, 607
PspPI GGNCC 1 cut(s) 563
PstNI CAGNNNCTG 1 cut(s) 441
PsuI RGATCY 2 cut(s) 120, 286
PteI GCGCGC 1 cut(s) 470
PvuII CAGCTG 1 cut(s) 141
SacII CCGCGG 1 cut(s) 391
SapI GCTCTTC 1 cut(s) 359
SatI GCNGC 7 cut(s) 11, 142, 373, 391, 495, 604, 609
Sau3AI GATC 3 cut(s) 120, 205, 286
Sau96I GGNCC 1 cut(s) 563
ScrFI CCNGG 3 cut(s) 109, 315, 628
SduI GDGCHC 1 cut(s) 116
SfoI GGCGCC 2 cut(s) 394, 607
Sfr303I CCGCGG 1 cut(s) 391
SgrBI CCGCGG 1 cut(s) 391
Sse9I AATT 1 cut(s) 21
SsiI CCGC 8 cut(s) 103, 171, 373, 388, 390, 495, 603, 609
SspDI GGCGCC 2 cut(s) 392, 605
SspMI CTAG 1 cut(s) 600
StyD4I CCNGG 3 cut(s) 107, 313, 626
StyI CCWWGG 1 cut(s) 498
TaaI ACNGT 1 cut(s) 73
TaiI ACGT 4 cut(s) 324, 381, 453, 486
TaqI TCGA 2 cut(s) 258, 542
TasI AATT 1 cut(s) 21
TauI GCSGC 5 cut(s) 375, 393, 497, 606, 611
TfiI GAWTC 2 cut(s) 622, 697
TseFI GTSAC 1 cut(s) 430
TseI GCWGC 2 cut(s) 10, 141
Tsp45I GTSAC 1 cut(s) 430
TspDTI ATGAA 1 cut(s) 319
TspGWI ACGGA 2 cut(s) 241, 513
XagI CCTNNNNNAGG 1 cut(s) 425
XmiI GTMKAC 1 cut(s) 75
XspI CTAG 1 cut(s) 600
ZraI GACGTC 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.