RLG00000035582

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000368
Physical Location & Seq
Reverse (-)
68981098 .. 68984060
2963 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035582

Sequence Viewer

Length: 408 bp
ATGCAGCGTGCAAACCAAATACCCTCGACAGTAACAAAAGCCAAAGGAGAAGAAACCAGTCACAATCTCAGCCGGGATCTAAATCCATCAATGCTCAGCCCAAGTGATGTAGAGGAAGAAAGCAAAGAAGAAAACACGGCAGAAGCCAACTTTGGTTTACCTGACATCGATGAGGAAGGCGGGACAGTGCTCCATCTAGGATGGAGGAAGCTCGTCGAGCTTGTAGATTACGGCCTTGGCTTTCCTGATGACCCAATCGATGGCCTTGTTGGGACGGTCGTATCTGAGCCGATCTTGCACGTCGTAGAATTGAATGGCGGTGGGGGCGGCAAGCCTGACGTGGTGGTCCCTAGGGCCTTAGGCTGTGCAGAGCTTGCTGTGGAGGTCTTTCCGGCTGGTGGCCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

14.2

Weight (kDa)

4.31

Isoelectric Point (pI)

38.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54520
fragaria_vesca FvH4_4g09430 FvH4_5g29750 FvH4_6g03490 FvH4_6g03500 FvH4_6g03510 FvH4_6g03510 FvH4_6g03510 FvH4_6g03520 FvH4_6g03530 FvH4_6g03530 FvH4_6g03530
malus_domestica MD04G1220400.v1.1 MD12G1236800.v1.1
prunus_persica Prupe.6G339400_v2.0.a1 Prupe.6G339400_v2.0.a1
pyrus_communis pycom04g19510 pycom12g21790
rosa_chinensis RchiOBHm_Chr3g0451981 RchiOBHm_Chr3g0451991 RchiOBHm_Chr3g0452001 RchiOBHm_Chr3g0452011 RchiOBHm_Chr3g0452041 RchiOBHm_Chr3g0452111 RchiOBHm_Chr3g0452121
rosa_laevigata RLG00000009056 RLG00000025627 RLG00000025628 RLG00000025630 RLG00000025631 RLG00000025632 RLG00000035582
rosa_multiflora Rmu_co8213316.1_g000001 Rmu_co8226081.1_g000001 Rmu_co8290691.1_g000001 Rmu_sc0001358.1_g000002 Rmu_sc0001358.1_g000004 Rmu_sc0001358.1_g000008 Rmu_sc0001358.1_g000011 Rmu_sc0001448.1_g000001 Rmu_sc0001448.1_g000005 Rmu_sc0001448.1_g000009 Rmu_sc0001729.1_g000006 Rmu_sc0001729.1_g000012 Rmu_sc0001729.1_g000017
rosa_roxburghii Rroxscaffold_164G00436060 Rroxscaffold_164G00436070 Rroxscaffold_164G00436100 Rroxscaffold_164G00436110 Rroxscaffold_164G00436120 Rroxscaffold_164G00436130 Rroxscaffold_4G00296230 Rroxscaffold_6G00389530 Rroxscaffold_6G00429160 Rroxscaffold_6G00429170 Rroxscaffold_6G00429200 Rroxscaffold_6G00429220 Rroxscaffold_6G00429240
rosa_rugosa Rorug01G0052400 Rorug01G0052500 Rorug02G0637900 Rorug02G0637900 Rorug02G0638000 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638200 Rorug02G0638300 Rorug02G0638400 Rorug04G0037400
rosa_samantha Rh2DG349300 Rh3AG039600 Rh3AG039700 Rh3AG039800 Rh3AG039900 Rh3AG040200 Rh3AG040300 Rh3BG041100 Rh3BG041200 Rh3BG041300 Rh3BG041500 Rh3BG041700 Rh3BG041800 Rh3CG039500 Rh3CG039600 Rh3CG039700 Rh3CG039800 Rh3CG040000 Rh3CG040200 Rh3DG040200 Rh3DG040400 Rh3DG040500 Rh3DG041000 Rh3DG041100 Rh4BG107500 Rh6BG085400 Rh6DG400800
rosa_wichuraiana Rw0G023520 Rw3G002980 Rw3G002990 Rw3G003010 Rw3G003030 Rw3G003040 Rw3G003060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 344
AccB7I CCANNNNNTGG 1 cut(s) 260
AciI CCGC 3 cut(s) 180, 318, 327
AclWI GGATC 1 cut(s) 84
AfiI CCNNNNNNNGG 2 cut(s) 260, 398
AgsI TTSAA 1 cut(s) 313
AjiI CACGTC 2 cut(s) 301, 340
AjuI GAANNNNNNNTTGG 2 cut(s) 135, 167
AluBI AGCT 3 cut(s) 211, 220, 373
AluI AGCT 3 cut(s) 211, 220, 373
Alw21I GWGCWC 1 cut(s) 192
AlwI GGATC 1 cut(s) 84
AoxI GGCC 4 cut(s) 232, 262, 354, 400
ApeKI GCWGC 1 cut(s) 4
AspA2I CCTAGG 1 cut(s) 350
AspS9I GGNCC 3 cut(s) 346, 354, 401
AsuC2I CCSGG 1 cut(s) 74
AvaII GGWCC 1 cut(s) 346
AvrII CCTAGG 1 cut(s) 350
AxyI CCTNAGG 1 cut(s) 358
BaeI ACNNNNGTAYC 2 cut(s) 264, 297
Bbv12I GWGCWC 1 cut(s) 192
BbvI GCAGC 1 cut(s) 16
BccI CCATC 4 cut(s) 94, 195, 201, 254
BceAI ACGGC 2 cut(s) 153, 247
BcnI CCSGG 1 cut(s) 74
BfaI CTAG 2 cut(s) 197, 351
BisI GCNGC 2 cut(s) 5, 328
BlnI CCTAGG 1 cut(s) 350
BlpI GCTNAGC 1 cut(s) 95
BlsI GCNGC 2 cut(s) 6, 329
Bme1390I CCNGG 1 cut(s) 74
Bme18I GGWCC 1 cut(s) 346
BmgBI CACGTC 2 cut(s) 301, 340
BmgT120I GGNCC 3 cut(s) 346, 354, 401
BmiI GGNNCC 1 cut(s) 348
BmrFI CCNGG 1 cut(s) 74
Bpu1102I GCTNAGC 1 cut(s) 95
BpuMI CCSGG 1 cut(s) 74
Bsa29I ATCGAT 2 cut(s) 168, 258
BsaBI GATNNNNATC 1 cut(s) 81
BsaJI CCNNGG 2 cut(s) 235, 350
Bsc4I CCNNNNNNNGG 2 cut(s) 260, 398
Bse1I ACTGG 1 cut(s) 57
Bse21I CCTNAGG 1 cut(s) 358
Bse8I GATNNNNATC 1 cut(s) 81
BseCI ATCGAT 2 cut(s) 168, 258
BseDI CCNNGG 2 cut(s) 235, 350
BseGI GGATG 1 cut(s) 206
BseJI GATNNNNATC 1 cut(s) 81
BseLI CCNNNNNNNGG 2 cut(s) 260, 398
BseMII CTCAG 3 cut(s) 82, 109, 276
BseNI ACTGG 1 cut(s) 57
BseXI GCAGC 1 cut(s) 16
BsgI GTGCAG 1 cut(s) 387
Bsh1285I CGRYCG 1 cut(s) 279
BshFI GGCC 4 cut(s) 234, 264, 356, 402
BshVI ATCGAT 2 cut(s) 168, 258
BsiEI CGRYCG 1 cut(s) 279
BsiHKAI GWGCWC 1 cut(s) 192
BsiSI CCGG 2 cut(s) 73, 392
BslFI GGGAC 3 cut(s) 196, 286, 332
BslI CCNNNNNNNGG 2 cut(s) 260, 398
BsmFI GGGAC 3 cut(s) 196, 286, 332
BsnI GGCC 4 cut(s) 234, 264, 356, 402
Bsp1286I GDGCHC 1 cut(s) 192
Bsp143I GATC 2 cut(s) 76, 291
Bsp1720I GCTNAGC 1 cut(s) 95
BspACI CCGC 3 cut(s) 180, 318, 327
BspANI GGCC 4 cut(s) 234, 264, 356, 402
BspCNI CTCAG 3 cut(s) 81, 108, 277
BspDI ATCGAT 2 cut(s) 168, 258
BspLI GGNNCC 1 cut(s) 348
BspPI GGATC 1 cut(s) 84
BsrI ACTGG 1 cut(s) 57
BssECI CCNNGG 2 cut(s) 235, 350
BssMI GATC 2 cut(s) 76, 291
BssT1I CCWWGG 2 cut(s) 235, 350
Bst4CI ACNGT 3 cut(s) 31, 187, 277
BstAPI GCANNNNNTGC 1 cut(s) 374
BstC8I GCNNGC 3 cut(s) 9, 332, 375
BstDEI CTNAG 5 cut(s) 68, 95, 285, 358, 405
BstF5I GGATG 1 cut(s) 206
BstKTI GATC 2 cut(s) 79, 294
BstMBI GATC 2 cut(s) 76, 291
BstMCI CGRYCG 1 cut(s) 279
BstMWI GCNNNNNNNGC 4 cut(s) 217, 295, 324, 374
BstSCI CCNGG 1 cut(s) 72
BstV1I GCAGC 1 cut(s) 16
BstX2I RGATCY 1 cut(s) 76
BstYI RGATCY 1 cut(s) 76
Bsu15I ATCGAT 2 cut(s) 168, 258
Bsu36I CCTNAGG 1 cut(s) 358
BsuRI GGCC 4 cut(s) 234, 264, 356, 402
BsuTUI ATCGAT 2 cut(s) 168, 258
BtrI CACGTC 2 cut(s) 301, 340
BtsCI GGATG 1 cut(s) 206
BtsIMutI CAGTG 1 cut(s) 192
Cac8I GCNNGC 3 cut(s) 9, 332, 375
Cfr13I GGNCC 3 cut(s) 346, 354, 401
ClaI ATCGAT 2 cut(s) 168, 258
DdeI CTNAG 5 cut(s) 68, 95, 285, 358, 405
DpnI GATC 2 cut(s) 78, 293
DpnII GATC 2 cut(s) 76, 291
DrdI GACNNNNNNGTC 1 cut(s) 344
DseDI GACNNNNNNGTC 1 cut(s) 344
Eco130I CCWWGG 2 cut(s) 235, 350
Eco47I GGWCC 1 cut(s) 346
Eco81I CCTNAGG 1 cut(s) 358
EcoO109I RGGNCCY 1 cut(s) 354
EcoT14I CCWWGG 2 cut(s) 235, 350
ErhI CCWWGG 2 cut(s) 235, 350
FaqI GGGAC 3 cut(s) 196, 286, 332
FauI CCCGC 1 cut(s) 173
Fnu4HI GCNGC 2 cut(s) 5, 328
FokI GGATG 1 cut(s) 213
Fsp4HI GCNGC 2 cut(s) 5, 328
FspBI CTAG 2 cut(s) 197, 351
GluI GCNGC 2 cut(s) 5, 328
HaeIII GGCC 4 cut(s) 234, 264, 356, 402
HapII CCGG 2 cut(s) 73, 392
HpaII CCGG 2 cut(s) 73, 392
Hpy166II GTNNAC 1 cut(s) 158
Hpy188I TCNGA 1 cut(s) 286
Hpy188III TCNNGA 1 cut(s) 245
Hpy8I GTNNAC 1 cut(s) 158
Hpy99I CGWCG 2 cut(s) 218, 305
HpyAV CCTTC 1 cut(s) 170
HpyCH4III ACNGT 3 cut(s) 31, 187, 277
HpyCH4IV ACGT 2 cut(s) 300, 339
HpyCH4V TGCA 4 cut(s) 4, 11, 298, 368
HpyF10VI GCNNNNNNNGC 4 cut(s) 217, 295, 324, 374
HpyF3I CTNAG 5 cut(s) 68, 95, 285, 358, 405
HpySE526I ACGT 2 cut(s) 300, 339
Kzo9I GATC 2 cut(s) 76, 291
LmnI GCTCC 1 cut(s) 195
LpnPI CCDG 6 cut(s) 70, 86, 174, 258, 348, 381
Lsp1109I GCAGC 1 cut(s) 16
MaeI CTAG 2 cut(s) 197, 351
MaeII ACGT 2 cut(s) 300, 339
MaeIII GTNAC 2 cut(s) 31, 59
MalI GATC 2 cut(s) 78, 293
MboI GATC 2 cut(s) 76, 291
MboII GAAGA 3 cut(s) 62, 128, 140
MflI RGATCY 1 cut(s) 76
MhlI GDGCHC 1 cut(s) 192
MluCI AATT 1 cut(s) 308
MnlI CCTC 5 cut(s) 34, 106, 166, 198, 376
MspI CCGG 2 cut(s) 73, 392
MspR9I CCNGG 1 cut(s) 74
MwoI GCNNNNNNNGC 4 cut(s) 217, 295, 324, 374
NciI CCSGG 1 cut(s) 74
NdeII GATC 2 cut(s) 76, 291
NlaIV GGNNCC 1 cut(s) 348
NmuCI GTSAC 1 cut(s) 59
PflMI CCANNNNNTGG 1 cut(s) 260
PkrI GCNGC 2 cut(s) 6, 329
PspN4I GGNNCC 1 cut(s) 348
PspPI GGNCC 3 cut(s) 346, 354, 401
PsuI RGATCY 1 cut(s) 76
SatI GCNGC 2 cut(s) 5, 328
Sau3AI GATC 2 cut(s) 76, 291
Sau96I GGNCC 3 cut(s) 346, 354, 401
ScrFI CCNGG 1 cut(s) 74
SduI GDGCHC 1 cut(s) 192
SetI ASST 7 cut(s) 163, 213, 222, 303, 342, 375, 387
SinI GGWCC 1 cut(s) 346
Sse9I AATT 1 cut(s) 308
SsiI CCGC 3 cut(s) 180, 318, 327
SspMI CTAG 2 cut(s) 197, 351
StyD4I CCNGG 1 cut(s) 72
StyI CCWWGG 2 cut(s) 235, 350
TaaI ACNGT 3 cut(s) 31, 187, 277
TaiI ACGT 2 cut(s) 303, 342
TaqI TCGA 4 cut(s) 26, 168, 216, 258
TasI AATT 1 cut(s) 308
TauI GCSGC 1 cut(s) 330
TscAI CASTG 1 cut(s) 192
TseFI GTSAC 1 cut(s) 59
TseI GCWGC 1 cut(s) 4
Tsp45I GTSAC 1 cut(s) 59
TspRI CASTG 1 cut(s) 192
Van91I CCANNNNNTGG 1 cut(s) 260
VpaK11BI GGWCC 1 cut(s) 346
XmaJI CCTAGG 1 cut(s) 350
XspI CTAG 2 cut(s) 197, 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.