Rh3BG041700

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000368
Physical Location & Seq
Reverse (-)
2709120 .. 2712402
3283 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG041700.1

Sequence Viewer

Length: 390 bp
ATGGAAGAAGCAGCTAAATTTGATGAAGTGACACTTGCCAATGTGAACAACTTTATAGTGCGTTCAACAAGCCAGTCACCAAATGAAGGCCACAAAGAATATATAGTGGTTACAGTTTTGGTGGCTACTCGAGGTGCACCAAAGTTGCCCAGCATTAATGGCCCTGGTGACTTGAAGAAAGCATTACAGAGTCTTGGATCCATTCCCTCGAACCAAATACTGGCGGTTGAGGTCTTGTGGACTCCTCAACAAGAAAATGATACTTTGACTGAGAAGGAACTACTTAAGGATTACCCGCAGTTGAGGGGCTTTTATGATGGAGGGTCACTTGAAGAAGGGCCATATGACGATTCCCACCCGTTCTTAGGCGTTACTGTAGTCAAGAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

129

Amino Acids

14.1

Weight (kDa)

4.72

Isoelectric Point (pI)

51.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1517 PF07466 1 - 102 1.3e-34 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54520
fragaria_vesca FvH4_4g09430 FvH4_5g29750 FvH4_6g03490 FvH4_6g03500 FvH4_6g03510 FvH4_6g03510 FvH4_6g03510 FvH4_6g03520 FvH4_6g03530 FvH4_6g03530 FvH4_6g03530
malus_domestica MD04G1220400.v1.1 MD12G1236800.v1.1
prunus_persica Prupe.6G339400_v2.0.a1 Prupe.6G339400_v2.0.a1
pyrus_communis pycom04g19510 pycom12g21790
rosa_chinensis RchiOBHm_Chr3g0451981 RchiOBHm_Chr3g0451991 RchiOBHm_Chr3g0452001 RchiOBHm_Chr3g0452011 RchiOBHm_Chr3g0452041 RchiOBHm_Chr3g0452111 RchiOBHm_Chr3g0452121
rosa_laevigata RLG00000009056 RLG00000025627 RLG00000025628 RLG00000025630 RLG00000025631 RLG00000025632 RLG00000035582
rosa_multiflora Rmu_co8213316.1_g000001 Rmu_co8226081.1_g000001 Rmu_co8290691.1_g000001 Rmu_sc0001358.1_g000002 Rmu_sc0001358.1_g000004 Rmu_sc0001358.1_g000008 Rmu_sc0001358.1_g000011 Rmu_sc0001448.1_g000001 Rmu_sc0001448.1_g000005 Rmu_sc0001448.1_g000009 Rmu_sc0001729.1_g000006 Rmu_sc0001729.1_g000012 Rmu_sc0001729.1_g000017
rosa_roxburghii Rroxscaffold_164G00436060 Rroxscaffold_164G00436070 Rroxscaffold_164G00436100 Rroxscaffold_164G00436110 Rroxscaffold_164G00436120 Rroxscaffold_164G00436130 Rroxscaffold_4G00296230 Rroxscaffold_6G00389530 Rroxscaffold_6G00429160 Rroxscaffold_6G00429170 Rroxscaffold_6G00429200 Rroxscaffold_6G00429220 Rroxscaffold_6G00429240
rosa_rugosa Rorug01G0052400 Rorug01G0052500 Rorug02G0637900 Rorug02G0637900 Rorug02G0638000 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638200 Rorug02G0638300 Rorug02G0638400 Rorug04G0037400
rosa_samantha Rh2DG349300 Rh3AG039600 Rh3AG039700 Rh3AG039800 Rh3AG039900 Rh3AG040200 Rh3AG040300 Rh3BG041100 Rh3BG041200 Rh3BG041300 Rh3BG041500 Rh3BG041700 Rh3BG041800 Rh3CG039500 Rh3CG039600 Rh3CG039700 Rh3CG039800 Rh3CG040000 Rh3CG040200 Rh3DG040200 Rh3DG040400 Rh3DG040500 Rh3DG041000 Rh3DG041100 Rh4BG107500 Rh6BG085400 Rh6DG400800
rosa_wichuraiana Rw0G023520 Rw3G002980 Rw3G002990 Rw3G003010 Rw3G003030 Rw3G003040 Rw3G003060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 220
AciI CCGC 2 cut(s) 224, 296
AclWI GGATC 2 cut(s) 192, 205
AcsI RAATTY 1 cut(s) 17
AfiI CCNNNNNNNGG 3 cut(s) 86, 220, 365
AflII CTTAAG 1 cut(s) 284
AgsI TTSAA 3 cut(s) 66, 175, 332
AjnI CCWGG 1 cut(s) 163
AluBI AGCT 2 cut(s) 14, 387
AluI AGCT 2 cut(s) 14, 387
Alw21I GWGCWC 1 cut(s) 139
Alw44I GTGCAC 1 cut(s) 135
AlwI GGATC 2 cut(s) 192, 205
Ama87I CYCGRG 1 cut(s) 129
AoxI GGCC 3 cut(s) 88, 160, 338
ApaLI GTGCAC 1 cut(s) 135
ApeKI GCWGC 1 cut(s) 11
ApoI RAATTY 1 cut(s) 17
AseI ATTAAT 1 cut(s) 156
AspS9I GGNCC 2 cut(s) 161, 338
AsuHPI GGTGA 2 cut(s) 69, 179
AvaI CYCGRG 1 cut(s) 129
BaeGI GKGCMC 1 cut(s) 139
BamHI GGATCC 1 cut(s) 197
Bbv12I GWGCWC 1 cut(s) 139
BbvI GCAGC 1 cut(s) 23
BccI CCATC 1 cut(s) 311
BciT130I CCWGG 1 cut(s) 165
BfaI CTAG 1 cut(s) 388
BfmI CTRYAG 1 cut(s) 375
BfrI CTTAAG 1 cut(s) 284
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
Bme1390I CCNGG 1 cut(s) 165
BmeT110I CYCGRG 1 cut(s) 129
BmgT120I GGNCC 2 cut(s) 161, 338
BmiI GGNNCC 1 cut(s) 199
BmrFI CCNGG 1 cut(s) 165
BsaJI CCNNGG 1 cut(s) 163
Bsc4I CCNNNNNNNGG 3 cut(s) 86, 220, 365
Bse1I ACTGG 2 cut(s) 73, 225
BseBI CCWGG 1 cut(s) 165
BseDI CCNNGG 1 cut(s) 163
BseLI CCNNNNNNNGG 3 cut(s) 86, 220, 365
BseMII CTCAG 1 cut(s) 261
BseNI ACTGG 2 cut(s) 73, 225
BseRI GAGGAG 1 cut(s) 234
BseSI GKGCMC 1 cut(s) 139
BseXI GCAGC 1 cut(s) 23
BseYI CCCAGC 1 cut(s) 149
BshFI GGCC 3 cut(s) 90, 162, 340
BsiHKAI GWGCWC 1 cut(s) 139
BsiHKCI CYCGRG 1 cut(s) 129
BslI CCNNNNNNNGG 3 cut(s) 86, 220, 365
BsnI GGCC 3 cut(s) 90, 162, 340
BsoBI CYCGRG 1 cut(s) 129
Bsp1286I GDGCHC 1 cut(s) 139
Bsp143I GATC 1 cut(s) 197
BspACI CCGC 2 cut(s) 224, 296
BspANI GGCC 3 cut(s) 90, 162, 340
BspCNI CTCAG 1 cut(s) 262
BspLI GGNNCC 1 cut(s) 199
BspPI GGATC 2 cut(s) 192, 205
BspTI CTTAAG 1 cut(s) 284
BsrI ACTGG 2 cut(s) 73, 225
BssECI CCNNGG 1 cut(s) 163
BssMI GATC 1 cut(s) 197
Bst2UI CCWGG 1 cut(s) 165
Bst4CI ACNGT 2 cut(s) 115, 376
BstAFI CTTAAG 1 cut(s) 284
BstDEI CTNAG 2 cut(s) 270, 364
BstKTI GATC 1 cut(s) 200
BstMBI GATC 1 cut(s) 197
BstMWI GCNNNNNNNGC 1 cut(s) 159
BstNI CCWGG 1 cut(s) 165
BstSCI CCNGG 1 cut(s) 163
BstSFI CTRYAG 1 cut(s) 375
BstSLI GKGCMC 1 cut(s) 139
BstV1I GCAGC 1 cut(s) 23
BstX2I RGATCY 1 cut(s) 197
BstYI RGATCY 1 cut(s) 197
BsuRI GGCC 3 cut(s) 90, 162, 340
Cfr13I GGNCC 2 cut(s) 161, 338
CviJI RGCY 8 cut(s) 14, 72, 90, 125, 162, 309, 340, 387
CviKI_1 RGCY 8 cut(s) 14, 72, 90, 125, 162, 309, 340, 387
DdeI CTNAG 2 cut(s) 270, 364
DpnI GATC 1 cut(s) 199
DpnII GATC 1 cut(s) 197
Eco88I CYCGRG 1 cut(s) 129
EcoRII CCWGG 1 cut(s) 163
FaiI YATR 6 cut(s) 56, 102, 104, 315, 343, 345
FalI AAGNNNNNCTT 2 cut(s) 18, 50
FauI CCCGC 1 cut(s) 303
FauNDI CATATG 1 cut(s) 343
Fnu4HI GCNGC 1 cut(s) 12
Fsp4HI GCNGC 1 cut(s) 12
FspBI CTAG 1 cut(s) 388
GluI GCNGC 1 cut(s) 12
GsaI CCCAGC 1 cut(s) 153
HaeIII GGCC 3 cut(s) 90, 162, 340
HinfI GANTC 3 cut(s) 190, 241, 350
HphI GGTGA 2 cut(s) 69, 179
Hpy166II GTNNAC 3 cut(s) 46, 137, 240
Hpy188III TCNNGA 1 cut(s) 382
Hpy8I GTNNAC 3 cut(s) 46, 137, 240
HpyAV CCTTC 3 cut(s) 80, 268, 329
HpyCH4III ACNGT 2 cut(s) 115, 376
HpyCH4V TGCA 1 cut(s) 137
HpyF10VI GCNNNNNNNGC 1 cut(s) 159
HpyF3I CTNAG 2 cut(s) 270, 364
Kzo9I GATC 1 cut(s) 197
LpnPI CCDG 5 cut(s) 86, 150, 163, 177, 206
Lsp1109I GCAGC 1 cut(s) 23
MaeI CTAG 1 cut(s) 388
MaeIII GTNAC 6 cut(s) 28, 75, 109, 167, 324, 370
MalI GATC 1 cut(s) 199
MboI GATC 1 cut(s) 197
MboII GAAGA 3 cut(s) 17, 187, 344
MflI RGATCY 1 cut(s) 197
MhlI GDGCHC 1 cut(s) 139
MluCI AATT 1 cut(s) 17
MlyI GAGTC 2 cut(s) 199, 235
MnlI CCTC 6 cut(s) 125, 217, 223, 255, 297, 314
MseI TTAA 2 cut(s) 156, 285
MspCI CTTAAG 1 cut(s) 284
MspR9I CCNGG 1 cut(s) 165
MvaI CCWGG 1 cut(s) 165
MwoI GCNNNNNNNGC 1 cut(s) 159
NdeI CATATG 1 cut(s) 343
NdeII GATC 1 cut(s) 197
NlaIV GGNNCC 1 cut(s) 199
NmuCI GTSAC 4 cut(s) 28, 75, 167, 324
PaeR7I CTCGAG 1 cut(s) 129
PfeI GAWTC 1 cut(s) 350
PflMI CCANNNNNTGG 1 cut(s) 220
PkrI GCNGC 1 cut(s) 13
PleI GAGTC 2 cut(s) 198, 235
PpsI GAGTC 2 cut(s) 198, 235
PshBI ATTAAT 1 cut(s) 156
Psp6I CCWGG 1 cut(s) 163
PspFI CCCAGC 1 cut(s) 149
PspGI CCWGG 1 cut(s) 163
PspN4I GGNNCC 1 cut(s) 199
PspPI GGNCC 2 cut(s) 161, 338
PspXI VCTCGAGB 1 cut(s) 129
PsuI RGATCY 1 cut(s) 197
SaqAI TTAA 2 cut(s) 156, 285
SatI GCNGC 1 cut(s) 12
Sau3AI GATC 1 cut(s) 197
Sau96I GGNCC 2 cut(s) 161, 338
SchI GAGTC 2 cut(s) 199, 235
ScrFI CCNGG 1 cut(s) 165
SduI GDGCHC 1 cut(s) 139
SetI ASST 4 cut(s) 16, 136, 234, 389
SfcI CTRYAG 1 cut(s) 375
Sfr274I CTCGAG 1 cut(s) 129
SlaI CTCGAG 1 cut(s) 129
SmlI CTYRAG 2 cut(s) 129, 284
SmoI CTYRAG 2 cut(s) 129, 284
Sse9I AATT 1 cut(s) 17
SsiI CCGC 2 cut(s) 224, 296
SspMI CTAG 1 cut(s) 388
StyD4I CCNGG 1 cut(s) 163
TaaI ACNGT 2 cut(s) 115, 376
TaqI TCGA 2 cut(s) 130, 209
TasI AATT 1 cut(s) 17
TfiI GAWTC 1 cut(s) 350
Tru1I TTAA 2 cut(s) 156, 285
Tru9I TTAA 2 cut(s) 156, 285
TseFI GTSAC 4 cut(s) 28, 75, 167, 324
TseI GCWGC 1 cut(s) 11
Tsp45I GTSAC 4 cut(s) 28, 75, 167, 324
TspDTI ATGAA 2 cut(s) 39, 99
Van91I CCANNNNNTGG 1 cut(s) 220
Vha464I CTTAAG 1 cut(s) 284
VneI GTGCAC 1 cut(s) 135
VspI ATTAAT 1 cut(s) 156
XapI RAATTY 1 cut(s) 17
XhoI CTCGAG 1 cut(s) 129
XspI CTAG 1 cut(s) 388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.